Carg21118 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21118
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 8060281 .. 8063352 (+)
RNA-Seq ExpressionCarg21118
SyntenyCarg21118
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGGAATTTCCCATAAGCCTTTTGCTCGTAGCTTGTTTTCGGAGACGTGGACACGGTCCAGGAAAGCCAGGTATGTAACTTCTGATGTGAAGAGGGTGGATGGAATATAGCTCAATCCTGTCAATAAGCTTTCAACTTTCTGCATTAGAAGAGAAATAAGTTAGCAAGCAGTGTTTTATGGGGCTATTTTTGTTTTTAGATGGCAAAACTCCTCACCTTGTTTATAAAGTCAAGTTCATCTGGGTTGAAGTACTTTGCTATTTCCAAGCAGTAGAAAACTTTTCGATCTGAATTGAATTTGCTGGCTTGCAGTGGTTCTTGGGGATTAAAAGAAGATCTCCAGTTATTGAGGAGACCAGTTCTATTAATAAATACAAATCCTTCAATATAATCAAATTGATCATTGGATGATATTAGATGTTCTTGGTCTCTTGTAAATTTGGAGAAGTCTGAGTAAAGTACTCTTATCCATTTTACCTGTCAAAAGTGATGGATTGTGTTTCATAATTTGAGTACCTCGCTTTAATGAAATGGATGGAATATGGCCTTACCATTTTTGGTGCCTTTTCCAAGGAAATCCTTGCCCTTGTTATGATGCCAAACTGTCCAAGCCCGCCAAGAACAGCATGGAAAAGGTCTGCATTTTGATTCTCTGAACAAGCAACCACCTCCCCTTTTCCTGCAATGCGTTTAGTTGAAGCAAATACTCTTAAAACATTTTATTAAGATCAACGAGTTGAAAAAACTAGAACATTACCAGGAAAGAAATAGTTGTTTCTTTGTGACATGACTAGCGATGTTACATGAAAGTTACCTGTGACAACTTCGAGCTGATAAACGTTGCTGATTTGGGGTCCATGCCGGAAGGCCTGCCCACTAATGCCAGCATTTGACAAGGTGCCTCCAACAGTAAGATGCAGGTAATCTGTCCAGGATTTTGGTGCCAGCCCTTGTTTAAGAGTTTCATGCAGGATATTTATCCACAGCTCTCCAGCTGAAACGTCCACATAAGGTAATTCCCCTGCATTTATTTTGATTTCTAGCCCCTGAAATGATTCCATATTGATAACTACACCATTATATGCTTGAGCTTGACCTTGGATGGAATGTCCATGGCCTCTAGCTGCAACCGTCAAGTCGGACGCATATCCCATACTGAAAATATGGTTTATCGTGTTCGAAATATCGGACACAGATTTTGGATGTAAAACAGCTAATGGGTATAAATTGTATCTGTTTCCAAAATCTGTTGCTGCTTTATGATTATTGTCAAAGCTGAGGTATCCATCCAATTCCAGTGTTTGCAGTTCATAAGAGGATATATCAGAGGAACCAAAATGAGGAGGAATTGTTGGGGCTGCAAAAAGGTGGTTGGTGCTGTCAGGTATGCAACTGATGTATAGAATTATGTATAACTTGAGGAAAATAATGCTTTGTTTGATGAAGCCAGAAGGTGGCGACCCCATCTTTCCTTAAGGAGAGAAAGAAAGAGTGATAGAAAGAATAAGAGAGAGAGAGCGAGAGAGAGCGAGAGAGAGAGAGAGAGCAAAAGGAGAGGTGCAGAAAAGCCTAAGGAATGAAGTGGAATGAAAGAGAATTTAAAGAAGTTCTTGGGCGGCATAGTCAAACATATAGTTGGTGGCATTGGGCGAGCTAGCTACCAGTAGTTCTTTTGGTTCACCTTTTTGAGGTTAAAAAAAAAAAAAACAGAGGAGATAAAAAAAACTGCCCAAAAGCAAAAGCAAAAACATAAATATTTCCTTTTCCTTTTCCTTTTCTCGATTGACACTTTCTGAAGAACAGTTCTCAACCAAATTTTAGTGAAAGAAAACAAAAATCACCTTGACCATTAATTGAGGAAGGTGCAGAGTGGTGTTGTTTACTGCATGAAGCAAAGATTTTATGTTTCTCCTTATTCCAATCTTGTCAAAATTCACTGTTTGTCTTCTTTACACACTGAATGCGGCTGCAAAACCACTGTAATTGGCTGAATTTTCACTTTTTGTCTGCTGTTCATATATGGTACAGTTTGAATTCAATTTCTCTATTGCAGAGTGAATGGCGGGCTGGCCCCTACTCTGTTTCATGCTTCTTCAAGCTGAGTGTCTGAGGAGTCAGATATCTTGGACCCACTTCATTTTTTCTTCATAAGAGTATAGATTGTGCTTTGACAGCTCTTACCAACGAGCTATATAGTTCTTTCTATATAATTTTCATGAATTTCTTACATGTTCATATTTAGCTTTGTATATGTTCGTTTGTCGATTTTTATCGTTATGGTATAGATATGAGATCAAGCCATCAAAAGCTTAAAAGGGTAAGCACAATCTAGATTGCTTACTACAAATTTTGGTCGAAACCATCGTAAGGGGCTCTCGATGCCGATCTTTGTAAGGTCAAAGACTCAATACATATGCACGTGAACTAGCTCATTAGTAGTTCTTAGAAAAAGTAAATAGAATAAGCATGATAGTTATGTTGAAGGTAGACAAATAAACATATTTCAAAGGGGAAATAAAAATCGAACGTAGAGACCGTCGATTCTTGTACGTCTGTTCTTAAATCTCTTCATTCACTGTGTTCTTGATTATAAATTTCAAAAGGTTATTCAAACAGTGATGGTCAATATTTTGTTATTCTCTCAATTGCATTGAACTGCATCTAGATTTTGATGTATGTTTCTCTTTGATTCAGGGACTAAAAGTTGTTTTTTTTCCTTTCTAGGTGCTGAAGAAGAAGTGTCTGAAAAGGAAAGATGAAAGATATATGTAGATGGAATGAGGGCAGAGCAGCAGCAGCAGCAGCAAAGAAAGCTCAATTTACTGCATGTGATAATTCCTTAGCTTTTTTGCGGACTTAAAAGGTATGTGGCTTCATCATCAAACTTCTAATGGAGGGTAAGAGTGAGAGTGAGAGAGAGAGAAGATTGGGAAGGGGTGGGGCCATAGACATGTGATCTGCATAAGGAGGGTAGTGGCCCAAGAAAAGGAAGGGATTGAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTTAGATAAAGAATGTTGAGGGTATGTTAATATCAA

mRNA sequence

ATGGATGAGGAATTTCCCATAAGCCTTTTGCTCGTAGCTTGTTTTCGGAGACGTGGACACGGTCCAGGAAAGCCAGGATATTTATCCACAGCTCTCCAGCTGAAACGTCCACATAAGAGGAACCAAAATGAGGAGGAATTGTTGGGGCTGCAAAAAGGTGGTTGGTGCTGTCAGGTGCTGAAGAAGAAGTGTCTGAAAAGGAAAGATGAAAGATATATGTAGATGGAATGAGGGCAGAGCAGCAGCAGCAGCAGCAAAGAAAGCTCAATTTACTGCATGTGATAATTCCTTAGCTTTTTTGCGGACTTAAAAGGTATGTGGCTTCATCATCAAACTTCTAATGGAGGGTAAGAGTGAGAGTGAGAGAGAGAGAAGATTGGGAAGGGGTGGGGCCATAGACATGTGATCTGCATAAGGAGGGTAGTGGCCCAAGAAAAGGAAGGGATTGAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTTAGATAAAGAATGTTGAGGGTATGTTAATATCAA

Coding sequence (CDS)

ATGGATGAGGAATTTCCCATAAGCCTTTTGCTCGTAGCTTGTTTTCGGAGACGTGGACACGGTCCAGGAAAGCCAGGATATTTATCCACAGCTCTCCAGCTGAAACGTCCACATAAGAGGAACCAAAATGAGGAGGAATTGTTGGGGCTGCAAAAAGGTGGTTGGTGCTGTCAGGTGCTGAAGAAGAAGTGTCTGAAAAGGAAAGATGAAAGATATATGTAG

Protein sequence

MDEEFPISLLLVACFRRRGHGPGKPGYLSTALQLKRPHKRNQNEEELLGLQKGGWCCQVLKKKCLKRKDERYM
Homology
[Close]
BLAST of Carg21118 vs. NCBI nr
Match: KAG7027650.1 (hypothetical protein SDJN02_11665, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 6.6e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MDEEFPISLLLVACFRRRGHGPGKPGYLSTALQLKRPHKRNQNEEELLGLQKGGWCCQVL 60
          MDEEFPISLLLVACFRRRGHGPGKPGYLSTALQLKRPHKRNQNEEELLGLQKGGWCCQVL
Sbjct: 1  MDEEFPISLLLVACFRRRGHGPGKPGYLSTALQLKRPHKRNQNEEELLGLQKGGWCCQVL 60

Query: 61 KKKCLKRKDERYM 74
          KKKCLKRKDERYM
Sbjct: 61 KKKCLKRKDERYM 73

The following BLAST results are available for this feature:
BLAST of Carg21118 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027650.16.6e-36100.00hypothetical protein SDJN02_11665, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg21118 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21118 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21118 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21118-RACarg21118-RAmRNA