Carg20956 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20956
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein CURVATURE THYLAKOID 1A, chloroplastic-like
Location	Carg_Chr14: 14561228 .. 14564503 (+)
RNA-Seq Expression	Carg20956
Synteny	Carg20956

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGATTTCAGATAGGGAGGCGACCAATCACAACGAATGACCTCGCCACGTGTCGATACCAGAGGCCGTCTTCCCAAAATGTGATCACGGATAAGCAAGCCATTTCTGAACATAGAAAATGGCGACAACAAAAAATCTATGCAAAAACCAGTCAGCAGGTCATCGACGGCCATTTGATTGAGGATTGCTCTCTCTTTCCGGCGCCGATTCTTTGTTTGATCGAACTCTCTGTAAAGAAATGGCAGCCACGGCCTCCCCCACAGCGGCCACCGCCGTTCTGAGACCTTCTCTGACTGCTTTTCAACCCACTCGCCGCTCCGCCTTGCCGCTCCTCCCCCCTCGACTCGGCTCCCCGTCTTTCACCACTTCTCTCAAATTCTCCTTAGGTAACTTGCTCGTAAAATCCCATTAATTTTCTTTGGGGCATTTCGTCGAACATCTTGTAGGACTTGAAAACGACAGTCTGTTTAATTTCTGATGTTTCATTTCTCGATTTGCTTTGTTACTTCCGGTATCCTCTTAGTTGATTCTTAACCGGTTGAGCATTTTCATATTGTCATGAAGAAAATTTCCTAGCGAACTGATATTCAACCGAGTATTTACTGCTCGTTGGGTTTCCAAAATACATTACATTTCATTTTGTGACCCAGCGGTGAACAGAAGCATACACTATACCGCCCGTCATGGTGTTAGATGGAAAATAGTTAATTGTTGTTCTTGTGATTTGAGCCAGAAGTTCATTTAGTTTTATACTTCATTCAGTTCTGGCAACTCAACTCCTACAAGATTGGACGCGTTGAGTTTGCTGGTAATCCGGTTAGGAACCATGACTCTCCACAATTGTATGATACTATCCACTCTGAGCATAAACTCTCGTGGCTTTGTTTTGGTTTCCCCAAAAGCCCTCATACCAATGGAGATGTATTCCTTACTTATAAACTCGTGATCAAAATCCCATAATTAACCAATGTGGGACTCCTCTCCCAACAATCCTCCTCCCGAACAAAGTACACCATAGAGCCTCTCTTGAGGTCTATGGAGCCCTCAAACAGCCTCCCATTAATCGAGACTCAACTCCTTCTCTAGAGCCCTCAAACAAAGTACACTCTTTGTTCTACACTTGAGTTACTTTTGACTACACTTTTGAGGCTCGCAACTTCTTTGTTTCACATTTGAGGATTCTATTGACGTGATTAAGTTAAAGGTATGGCTCTAATACCATGTTAGGAGTCACAGACCTCCACAATAGTATGATGTTGTCCACTTTGAGCATAAGCTCTCATAGTTTTGCTTTTGGTTTCCCCAAAAGGCCTCATACTACTGGAGATGTATTCCTTACTTATAAACCTATGATCAACCCCTTAAATTAGTCGGTGTGAAACACGATCCTCACTAAATAATGCATTGTACATCTAGGTATTTGACCATGGAGGGAGAAGGGGATTAATGTGCTGTGATTAGCATCGAGAAGTCAGATATGCAAAGTTTTCAAACCAATTTTACGCATCAGACATCTATAAATATGCTTACTTTCAAGAGAAACCTTTCTATGTTTGAATTTAGAATAAGATCTTTGATGTGCAAATGCATAGCTTTATGCATCAATATCTTAGATTTGTGTGACTTAGTTTAAGAGCACTGTTCACTTTTTGTGTAATGAAAATTCTTTTACATTGTTCATTGCTATTTCTGAAAAATGTGAATTAGATGAACTTTATTGGATTTTCCCAACCTACCATTTGGTGACAGAGTCTCGTAGATCGTCTTTGCTTCAAACCCGAGCCTCATCTTCAGAAGAATCATCTGCTGCTGATGCATCTGAGCTCTTTACAGACTTGAAAGAAAAGGTAGAACCACATGAAACATAGCAACATCCGTTATTGTCATAATTCTGAGAATGTTCTGTTATATTTCATCATTCATTTTATGGTGTTTCTGTTAGTTATACTGACTCTGTGGATGACTCTAAGATATAATTTCATCCTAATGTTTACTAGTGGGATGCCCTTGAGAACAAATCGACGGTACTCCTCTACGGAGGCGGGGCGATCGTTGCTGTTTGGCTTTCTTCAATTCTTGTTGGTGCAATCAACTCAGTTCCATTGGTAATATGATTCCTTCCATCAAACTTTTGCTTCAATATTCACTGACAGGCATCACCGTTGCTACTTGATGCTCTCTCTTGTTATATCATCTACAAAATATTGCTTTCCAATTTGTTTCTTCCCCTTGTAAAGCCATTTGACACTTACTCTCTGTCCATGTTCTCGTCAGCTTCCGAAGATCCTGGAGTTGGTAGGACTCGGATATACGGGGTGGTTCGTGTACCGATATCTACTCTTCAAGGTAAGTTTAGAAGAGAACTATGATTTGTTTCAAAAAGGTTTGCAATTTGTCATGACTTGAATAAATGCTCGATGTTTTCTCAAGTTTTACTGTGAGATCCTACGTCTTTTGGAGAGGGGAACGAAACATTTCTTATAAGGGTCTGAAAACCTCTCCCTAACAAATGCATTTTAAAACAGACAATATCTACTAGCAGTGGTCTTGAGCGGTTACATTTACCCTCCATGAAATTTCAGCATAGATTCTAAGTTTTGTTTGAGATTAAAAACTTGTAACTCTAGTTACATGTTTCTAACGAGATGGTCGGGCTAGAATAATCTGTTCCGAAGCATAATTGTATCTCGAGTCCTAAAATACCATAGAAATTCGAGTTCTTGATAGGCACTGCAACTAGATATCAGCTGAAAAAGTGTTTTTGTATGGTATTTTCCTACCTTCCTCAGTCAAGCAGAAAGGAACTAGCTGATGATATTGAAGTATTGAAGAAGAAGATCGCTGGAACAGAATAAGTAGCACGTGGTCGGGCGCCATGATCGACATGGTTTGTTCCTCTTGTTATCATTTTGTACTTGATTCTCTTTCGTTTAGAAGAGGCAATCTAAATCTAAATCTGAATCATGTAATGTGGAATAGTTTTTGCTTTGATCCCTGTAACTCATGTTCCCTTTCATTGTATGTGTAATAAGATCTGTTAAGTTCATTGCATGGAAAGTGGAAACCCCCCTTTCTCAAATTTACTTCCTTCCTGCTTCACAACAAAAATGGTGAAATTCATTGGTTGGTTCATGTTAGTTTATTTAGTTTGATTTGCGCTTATTTTTTGTTAAATGGATTTTACCGTCCCAACAATTTTATAGTTTCCTGAGGTAAATCATGCAACATCCTAAGTTCACCGCTCGTAAATATTGTCTGTTTTAGTTCATTACAAA

mRNA sequence

TAAGGATTTCAGATAGGGAGGCGACCAATCACAACGAATGACCTCGCCACGTGTCGATACCAGAGGCCGTCTTCCCAAAATGTGATCACGGATAAGCAAGCCATTTCTGAACATAGAAAATGGCGACAACAAAAAATCTATGCAAAAACCAGTCAGCAGGTCATCGACGGCCATTTGATTGAGGATTGCTCTCTCTTTCCGGCGCCGATTCTTTGTTTGATCGAACTCTCTGTAAAGAAATGGCAGCCACGGCCTCCCCCACAGCGGCCACCGCCGTTCTGAGACCTTCTCTGACTGCTTTTCAACCCACTCGCCGCTCCGCCTTGCCGCTCCTCCCCCCTCGACTCGGCTCCCCGTCTTTCACCACTTCTCTCAAATTCTCCTTAGAGTCTCGTAGATCGTCTTTGCTTCAAACCCGAGCCTCATCTTCAGAAGAATCATCTGCTGCTGATGCATCTGAGCTCTTTACAGACTTGAAAGAAAAGTGGGATGCCCTTGAGAACAAATCGACGGTACTCCTCTACGGAGGCGGGGCGATCGTTGCTGTTTGGCTTTCTTCAATTCTTGTTGGTGCAATCAACTCAGTTCCATTGCTTCCGAAGATCCTGGAGTTGGTAGGACTCGGATATACGGGGTGGTTCGTGTACCGATATCTACTCTTCAAGTCAAGCAGAAAGGAACTAGCTGATGATATTGAAGTATTGAAGAAGAAGATCGCTGGAACAGAATAAGTAGCACGTGGTCGGGCGCCATGATCGACATGGTTTGTTCCTCTTGTTATCATTTTGTACTTGATTCTCTTTCGTTTAGAAGAGGCAATCTAAATCTAAATCTGAATCATGTAATGTGGAATAGTTTTTGCTTTGATCCCTGTAACTCATGTTCCCTTTCATTGTATGTGTAATAAGATCTGTTAAGTTCATTGCATGGAAAGTGGAAACCCCCCTTTCTCAAATTTACTTCCTTCCTGCTTCACAACAAAAATGGTGAAATTCATTGGTTGGTTCATGTTAGTTTATTTAGTTTGATTTGCGCTTATTTTTTGTTAAATGGATTTTACCGTCCCAACAATTTTATAGTTTCCTGAGGTAAATCATGCAACATCCTAAGTTCACCGCTCGTAAATATTGTCTGTTTTAGTTCATTACAAA

Coding sequence (CDS)

ATGGCAGCCACGGCCTCCCCCACAGCGGCCACCGCCGTTCTGAGACCTTCTCTGACTGCTTTTCAACCCACTCGCCGCTCCGCCTTGCCGCTCCTCCCCCCTCGACTCGGCTCCCCGTCTTTCACCACTTCTCTCAAATTCTCCTTAGAGTCTCGTAGATCGTCTTTGCTTCAAACCCGAGCCTCATCTTCAGAAGAATCATCTGCTGCTGATGCATCTGAGCTCTTTACAGACTTGAAAGAAAAGTGGGATGCCCTTGAGAACAAATCGACGGTACTCCTCTACGGAGGCGGGGCGATCGTTGCTGTTTGGCTTTCTTCAATTCTTGTTGGTGCAATCAACTCAGTTCCATTGCTTCCGAAGATCCTGGAGTTGGTAGGACTCGGATATACGGGGTGGTTCGTGTACCGATATCTACTCTTCAAGTCAAGCAGAAAGGAACTAGCTGATGATATTGAAGTATTGAAGAAGAAGATCGCTGGAACAGAATAA

Protein sequence

MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE

Homology

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BLAST of Carg20956 vs. NCBI nr
Match: XP_022924752.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita moschata] >KAG6582652.1 Protein CURVATURE THYLAKOID 1A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019049.1 Protein CURVATURE THYLAKOID 1A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.7 bits (761), Expect = 5.9e-77
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 163

[Close]

BLAST of Carg20956 vs. NCBI nr
Match: XP_023529055.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 2.9e-76
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSF TSLKFSLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFPTSLKFSLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 163

[Close]

BLAST of Carg20956 vs. NCBI nr
Match: XP_022980149.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 294.7 bits (753), Expect = 5.0e-76
Identity = 161/163 (98.77%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPR+GSPSF TSLKFSLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRIGSPSFPTSLKFSLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 163

[Close]

BLAST of Carg20956 vs. NCBI nr
Match: XP_038876984.1 (protein CURVATURE THYLAKOID 1A, chloroplastic [Benincasa hispida])

HSP 1 Score: 284.3 bits (726), Expect = 6.8e-73
Identity = 156/163 (95.71%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSL A QPTRRS LPLLPPR GSPSF+TSLKFS ESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLAASQPTRRSVLPLLPPRFGSPSFSTSLKFSSESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGTE 163

[Close]

BLAST of Carg20956 vs. NCBI nr
Match: XP_023539167.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSL A QPTRRSA+PLLPPRLGSPSF TSLK SLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLAAPQPTRRSAMPLLPPRLGSPSFPTSLKISLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGA+NSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAVNSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAG E
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGAE 163

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BLAST of Carg20956 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.9e-48
Identity = 113/166 (68.07%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPR-LGSPSFTTSLKFSLES--RRSSLL 60
           MA + + +++ AV+ P + A   TR SA+P LPPR  G  SFT  LK    +  ++  LL
Sbjct: 1   MAISVAASSSMAVMVPRVPAVS-TRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELL 60

Query: 61  QTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVP 120
           +TRA SSEE+S+ D +EL TDLKEKWD LENKSTVL+YGGGAIVAVWLSSI+VGAINSVP
Sbjct: 61  KTRA-SSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVP 120

Query: 121 LLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           LLPK++ELVGLGYTGWFVYRYLLFKSSRKELA+DIE LKKKIAG+E
Sbjct: 121 LLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

[Close]

BLAST of Carg20956 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 46  KFSLESRRSSLL--QTRASSSEESSAAD----ASELFTDLKEKWDALENKSTVLLYGGGA 105
           +F +E R   ++  + + S+SE   A D    A E   D+K   D      ++LLYG GA
Sbjct: 71  EFGVEDRDGVVVAAEEKNSNSEAPQAEDEETQALEFLNDIKLDSD---KTYSILLYGSGA 130

Query: 106 IVAVWLSSILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKI 164
           IVA++L+S +V ++ ++PL PK++E+VGLGYT WF  RYLLFK +R+EL   +  +KK++
Sbjct: 131 IVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQV 190

[Close]

BLAST of Carg20956 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 42/160 (26.25%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 3   ATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTRAS 62
           A+AS ++ + +  P+L     TR +          + ++   +  ++ +R ++ +    +
Sbjct: 23  ASASASSPSCISLPTLPIQSHTRAAK---------ATAYCRKIVRNVVTRATTEVGEAPA 82

Query: 63  SSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPKI 122
           ++ E+   +  E+    +E W+ +++K  +       +VA+W S+ ++ AI+ +PL+P +
Sbjct: 83  TTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGV 142

Query: 123 LELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGT 163
           LELVG+GYTGWF Y+ L+FK  R+ L + ++   K I G+
Sbjct: 143 LELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173

[Close]

BLAST of Carg20956 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.5e-10
Identity = 39/113 (34.51%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 48  SLESRRSSLLQTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSS 107
           SL    SS+     +S E S ++   ++ + ++  WD  E++  ++  G   IVA+W S 
Sbjct: 42  SLTRNPSSISLMVKASGESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASL 101

Query: 108 ILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIA 161
            L+ AI+ +P++    ELVG+ ++ WF YRYLLFK  R+EL+   +++KK +A
Sbjct: 102 NLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELS---KIVKKSVA 151

[Close]

BLAST of Carg20956 vs. ExPASy Swiss-Prot
Match: Q119Z5 (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-08
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 94  LYGGGAIVAVWLS--SILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADD 153
           L+G  A+V +  +  ++++ A++ +P+L  I EL+G+ Y  WFVYRYLL +S+R+EL D 
Sbjct: 809 LFGWLALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDK 868

Query: 154 IEVLKKKIAG 162
           IE +K++I G
Sbjct: 869 IENIKREIFG 878

[Close]

BLAST of Carg20956 vs. ExPASy TrEMBL
Match: A0A6J1E9V5 (protein CURVATURE THYLAKOID 1A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111432156 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.9e-77
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 163

[Close]

BLAST of Carg20956 vs. ExPASy TrEMBL
Match: A0A6J1IYH5 (protein CURVATURE THYLAKOID 1A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479625 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 161/163 (98.77%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPR+GSPSF TSLKFSLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRIGSPSFPTSLKFSLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 163

[Close]

BLAST of Carg20956 vs. ExPASy TrEMBL
Match: A0A6J1EZQ9 (protein CURVATURE THYLAKOID 1A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441016 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.7e-72
Identity = 154/163 (94.48%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAA AVLRPSL A QPTRRSA+PLLPPRLGSPSF TSLK SLESRRSSLLQTR
Sbjct: 1   MAATASPTAAIAVLRPSLAAPQPTRRSAMPLLPPRLGSPSFPTSLKISLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGA+NSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAVNSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAG E
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGAE 163

[Close]

BLAST of Carg20956 vs. ExPASy TrEMBL
Match: A0A6J1II67 (protein CURVATURE THYLAKOID 1A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111473314 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.2e-72
Identity = 153/163 (93.87%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSL A QPTRRSA+PLLPPR GSP+F TSLK SLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLAAPQPTRRSAMPLLPPRFGSPAFPTSLKISLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGA+NSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAVNSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAG E
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGAE 163

[Close]

BLAST of Carg20956 vs. ExPASy TrEMBL
Match: A0A5D3D097 (Protein CURVATURE THYLAKOID 1A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005230 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.4e-71
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSP-SFTTSLKFSLESRRSSLLQT 60
           MAATASPTAATAVLRPSL A QPTRRS LPLLPPR+GSP SF+TSLK SL+SRRSSLLQT
Sbjct: 1   MAATASPTAATAVLRPSLAASQPTRRSVLPLLPPRVGSPSSFSTSLKLSLDSRRSSLLQT 60

Query: 61  RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL 120
           RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL
Sbjct: 61  RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL 120

Query: 121 PKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           PKILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAGTE
Sbjct: 121 PKILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGTE 164

[Close]

BLAST of Carg20956 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 191.4 bits (485), Expect = 5.6e-49
Identity = 113/166 (68.07%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPR-LGSPSFTTSLKFSLES--RRSSLL 60
           MA + + +++ AV+ P + A   TR SA+P LPPR  G  SFT  LK    +  ++  LL
Sbjct: 1   MAISVAASSSMAVMVPRVPAVS-TRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELL 60

Query: 61  QTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVP 120
           +TRA SSEE+S+ D +EL TDLKEKWD LENKSTVL+YGGGAIVAVWLSSI+VGAINSVP
Sbjct: 61  KTRA-SSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVP 120

Query: 121 LLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           LLPK++ELVGLGYTGWFVYRYLLFKSSRKELA+DIE LKKKIAG+E
Sbjct: 121 LLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

[Close]

BLAST of Carg20956 vs. TAIR 10
Match: AT4G01150.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-24
Identity = 73/122 (59.84%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPR-LGSPSFTTSLKFSLES--RRSSLL 60
           MA + + +++ AV+ P + A   TR SA+P LPPR  G  SFT  LK    +  ++  LL
Sbjct: 1   MAISVAASSSMAVMVPRVPAVS-TRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELL 60

Query: 61  QTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVP 120
           +TRA SSEE+S+ D +EL TDLKEKWD LENKSTVL+YGGGAIVAVWLSSI+VGAINSVP
Sbjct: 61  KTRA-SSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVP 120

[Close]

BLAST of Carg20956 vs. TAIR 10
Match: AT4G38100.1 (unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 7.4e-17
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 46  KFSLESRRSSLL--QTRASSSEESSAAD----ASELFTDLKEKWDALENKSTVLLYGGGA 105
           +F +E R   ++  + + S+SE   A D    A E   D+K   D      ++LLYG GA
Sbjct: 71  EFGVEDRDGVVVAAEEKNSNSEAPQAEDEETQALEFLNDIKLDSD---KTYSILLYGSGA 130

Query: 106 IVAVWLSSILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKI 164
           IVA++L+S +V ++ ++PL PK++E+VGLGYT WF  RYLLFK +R+EL   +  +KK++
Sbjct: 131 IVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQV 190

[Close]

BLAST of Carg20956 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11
Identity = 42/160 (26.25%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 3   ATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTRAS 62
           A+AS ++ + +  P+L     TR +          + ++   +  ++ +R ++ +    +
Sbjct: 23  ASASASSPSCISLPTLPIQSHTRAAK---------ATAYCRKIVRNVVTRATTEVGEAPA 82

Query: 63  SSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPKI 122
           ++ E+   +  E+    +E W+ +++K  +       +VA+W S+ ++ AI+ +PL+P +
Sbjct: 83  TTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGV 142

Query: 123 LELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGT 163
           LELVG+GYTGWF Y+ L+FK  R+ L + ++   K I G+
Sbjct: 143 LELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173

[Close]

BLAST of Carg20956 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11
Identity = 42/160 (26.25%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 3   ATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTRAS 62
           A+AS ++ + +  P+L     TR +          + ++   +  ++ +R ++ +    +
Sbjct: 23  ASASASSPSCISLPTLPIQSHTRAAK---------ATAYCRKIVRNVVTRATTEVGEAPA 82

Query: 63  SSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPKI 122
           ++ E+   +  E+    +E W+ +++K  +       +VA+W S+ ++ AI+ +PL+P +
Sbjct: 83  TTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGV 142

Query: 123 LELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGT 163
           LELVG+GYTGWF Y+ L+FK  R+ L + ++   K I G+
Sbjct: 143 LELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173

The following BLAST results are available for this feature:

BLAST of Carg20956 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924752.1	5.9e-77	100.00	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita moschata] >KAG6582...	[more]
XP_023529055.1	2.9e-76	99.39	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022980149.1	5.0e-76	98.77	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita maxima]	[more]
XP_038876984.1	6.8e-73	95.71	protein CURVATURE THYLAKOID 1A, chloroplastic [Benincasa hispida]	[more]
XP_023539167.1	2.0e-72	95.09	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg20956 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04616	7.9e-48	68.07	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LDD3	1.0e-15	40.32	Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LCA1	1.7e-10	26.25	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M812	8.5e-10	34.51	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q119Z5	7.9e-08	42.86	Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=...	[more]

BLAST of Carg20956 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9V5	2.9e-77	100.00	protein CURVATURE THYLAKOID 1A, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1IYH5	2.4e-76	98.77	protein CURVATURE THYLAKOID 1A, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1EZQ9	4.7e-72	94.48	protein CURVATURE THYLAKOID 1A, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1II67	6.2e-72	93.87	protein CURVATURE THYLAKOID 1A, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5D3D097	1.4e-71	94.51	Protein CURVATURE THYLAKOID 1A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Carg20956 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01150.1	5.6e-49	68.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G01150.2	1.6e-24	59.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G38100.1	7.4e-17	40.32	unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 pl...	[more]
AT2G46820.1	1.2e-11	26.25	photosystem I P subunit	[more]
AT2G46820.2	1.2e-11	26.25	photosystem I P subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 78..161 e-value: 6.5E-30 score: 102.8
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 2..163
None	No IPR available	PANTHER	PTHR33222:SF31	MEMBRANE PHOSPHOPROTEIN 14 KDA, CHLOROPLAST, PUTATIVE-RELATED	coord: 2..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20956-RA	Carg20956-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0097753	membrane bending
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009515	granal stacked thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid