Carg20619 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20619
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Serine/arginine-rich splicing factor SR45a-like
Location	Carg_Chr13: 483086 .. 484533 (+)
RNA-Seq Expression	Carg20619
Synteny	Carg20619

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACTCTCTGATGCTTTTACTATTGAGCTTGAGAGCCAGACGTTTTATTATTTTGCCGCGAATCGCCGTTCTGTAGGCTGCTGTGATTGAGTGAGAACTGAGAAGAACGCTCGGTTACCTTGTGCTTCGATTTAGGTTTTGCATTCGTTGATTTGTACGGTAGGTTCTTTCTTTTTCTTTCATTTGATGAATTTTCATGTCTTTTCGTTGTCTGAGATGAAATGTTGGGGCTCTGTTCTAAATTTTCTTTTGAGGTGCCTATGATGATGTTTACGGGAAGAATTAGGTTCGGGTTGTAATTCTCGTTGTTTTATGCGATTTGCATGGATGTTTTAGGTGGAATTAGAATCATTTCGGAGTACATAGTGTTTGAAGTTTGCAGTTCTTCTCTTTGTCTGAGGATGATATGCTTAGGGTTCTGATCCACATGATTCTTCTTTCTATGACAATTTTAGGAAAAATTAGGTTTGGATTATTAAGTCATTCATTTTAATCCTATGATTATTATAGTCATGGGAAGCAAATGAAGTGTTCGCTATAATTTTCGTGGATTTTTTCTAGTTTAATCAGAATCGGATCGAAGAAGGTGTTATTAATTATATCTCTTTCCATTGGAAGTCATGGATGTTATATTTTTCTTTCTTTGATTGCGTTTCGATGAATTTTCAATTAGCGATTCCTGTCTATACGCTGTTCTATTCGAGATGACATTCATGCTCAAAAGTACTATCATCGTTTCTGTCTTTGTTGACTCTTGTGCTTCTTCAGTAAATCCCTATCGAATTTAGTTTTTTCATGTTTGATCTGGTTGCAGATGTCGTACTCCCGAAGGTCTAGATATTCCCGCTCCCCTTCATATAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGTATTTCTTGCTCATAACCGTCTGCTTGCTTGGTTTTCCATCCTCTAAATCGTATGTGGTGCATTTATTTTTTATTTTTTGGCTACTTGATTTCTTTTTCAGGAGTCCTTCAAGTGACGTTGAAAATCCTGGGAACAATTTATACGTCACCGGTTTGTCATCTCGAGTAACTAAAAGAGAGCTAGAGAAGCATTTTTCTGCCGAGGGAACAGTACGATCTTGGCTTTTTTTTTTTTTTTTTTTTTTTTTCCCTTCTTGGCTTGTATACTTAGTGGCCGAGTATATCTTTTGTCCTTTTGTGTTGATGATCGAAACTATGGACTATTTTATCAGTTCTTGTGATTTTCCTTTAACTCTCCAGGTGCTAGATGTTCATCTTGTGGCTGATCCGTGGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAACGACGAGGCTGAACGATGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTACAATTACTGTAGAAAAGGTAAACATTGAACCAAGTATTATTTCTTAG

mRNA sequence

AAAACTCTCTGATGCTTTTACTATTGAGCTTGAGAGCCAGACGTTTTATTATTTTGCCGCGAATCGCCGTTCTGTAGGCTGCTGTGATTGAGTGAGAACTGAGAAGAACGCTCGGTTACCTTGTGCTTCGATTTAGGTTTTGCATTCGTTGATTTGTACGATGTCGTACTCCCGAAGGTCTAGATATTCCCGCTCCCCTTCATATAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGTCCTTCAAGTGACGTTGAAAATCCTGGGAACAATTTATACGTCACCGGTTTGTCATCTCGAGTAACTAAAAGAGAGCTAGAGAAGCATTTTTCTGCCGAGGGAACAGTGCTAGATGTTCATCTTGTGGCTGATCCGTGGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAACGACGAGGCTGAACGATGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTACAATTACTGTAGAAAAGGTAAACATTGAACCAAGTATTATTTCTTAG

Coding sequence (CDS)

ATGTCGTACTCCCGAAGGTCTAGATATTCCCGCTCCCCTTCATATAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGTCCTTCAAGTGACGTTGAAAATCCTGGGAACAATTTATACGTCACCGGTTTGTCATCTCGAGTAACTAAAAGAGAGCTAGAGAAGCATTTTTCTGCCGAGGGAACAGTGCTAGATGTTCATCTTGTGGCTGATCCGTGGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAACGACGAGGCTGAACGATGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTACAATTACTGTAGAAAAGGTAAACATTGAACCAAGTATTATTTCTTAG

Protein sequence

MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNIEPSIIS

Homology

[Close]

BLAST of Carg20619 vs. NCBI nr
Match: KAG7019154.1 (Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNI 120
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNI
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNI 120

Query: 121 EPSIIS 127
           EPSIIS
Sbjct: 121 EPSIIS 126

[Close]

BLAST of Carg20619 vs. NCBI nr
Match: KAG6583387.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.9 bits (564), Expect = 3.2e-54
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK
Sbjct: 53  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 112

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR ITVEK
Sbjct: 113 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 169

[Close]

BLAST of Carg20619 vs. NCBI nr
Match: XP_022964744.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR ITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Carg20619 vs. NCBI nr
Match: XP_022964743.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR ITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Carg20619 vs. NCBI nr
Match: XP_023522126.1 (serine/arginine-rich splicing factor SR45a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR ITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Carg20619 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-34
Identity = 84/120 (70.00%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT+R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

[Close]

BLAST of Carg20619 vs. ExPASy Swiss-Prot
Match: Q80YR5 (Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-13
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 41  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI 100
           G NL+V+GLSS     +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509

Query: 101 KYLNRSVLEGRTITVEKVNIEPS 124
            +L+R+ L GR I+VEK   EPS
Sbjct: 510 SHLHRTELHGRMISVEKAKNEPS 532

[Close]

BLAST of Carg20619 vs. ExPASy Swiss-Prot
Match: Q14151 (Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 41  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI 100
           G NL+V+GLSS     +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA +CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465

Query: 101 KYLNRSVLEGRTITVEKVNIEPS 124
            +L+R+ L GR I+VEK   EP+
Sbjct: 466 SHLHRTELHGRMISVEKAKNEPA 488

[Close]

BLAST of Carg20619 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-11
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 20  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWT 79
           + S +  +   +S     EN GN+L+V+G++SR+ + EL++ FS  GTV  V ++ +P T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 80  RESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           + SRGFGF++ S+ +EA   I  LN     GR + V+K
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176

[Close]

BLAST of Carg20619 vs. ExPASy Swiss-Prot
Match: D3YXK2 (Scaffold attachment factor B1 OS=Mus musculus OX=10090 GN=Safb PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-10
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 41  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI 100
           G N +V+GLSS     +L+  FS  G V+   +V +  +  +R +GF+TMS+ +EA +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486

Query: 101 KYLNRSVLEGRTITVEKVNIEPS 124
            +L+++ L G+ I+VEK   EP+
Sbjct: 487 SHLHKTELHGKMISVEKAKSEPT 509

[Close]

BLAST of Carg20619 vs. ExPASy TrEMBL
Match: A0A6J1HP51 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464732 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.9e-54
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR ITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Carg20619 vs. ExPASy TrEMBL
Match: A0A6J1HLT5 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464732 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.9e-54
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR ITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Carg20619 vs. ExPASy TrEMBL
Match: A0A6J1I361 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469489 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCIKYLNRSVLEGR ITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Carg20619 vs. ExPASy TrEMBL
Match: A0A6J1I474 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469489 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCIKYLNRSVLEGR ITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Carg20619 vs. ExPASy TrEMBL
Match: A0A6J1I0W1 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111469489 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCIKYLNRSVLEGR ITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Carg20619 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.5 bits (371), Expect = 7.1e-36
Identity = 84/120 (70.00%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT+R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

[Close]

BLAST of Carg20619 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.5 bits (371), Expect = 7.1e-36
Identity = 84/120 (70.00%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT+R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 61  LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of Carg20619 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-30
Identity = 75/116 (64.66%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKH 61
           S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS+RVT ++LE H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 62  FSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           F+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 146

[Close]

BLAST of Carg20619 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-29
Identity = 75/117 (64.10%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSSRVTKRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS+RVT ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

[Close]

BLAST of Carg20619 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-29
Identity = 75/117 (64.10%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSSRVTKRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS+RVT ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK 118
           HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

The following BLAST results are available for this feature:

BLAST of Carg20619 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019154.1	1.1e-59	100.00	Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6583387.1	3.2e-54	99.15	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]
XP_022964744.1	1.2e-53	98.29	serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata]	[more]
XP_022964743.1	1.2e-53	98.29	serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata]	[more]
XP_023522126.1	1.2e-53	98.29	serine/arginine-rich splicing factor SR45a-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg20619 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	1.0e-34	70.00	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q80YR5	2.8e-13	44.58	Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2	[more]
Q14151	1.4e-12	43.37	Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1	[more]
Q10422	2.0e-11	37.76	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
D3YXK2	1.0e-10	38.55	Scaffold attachment factor B1 OS=Mus musculus OX=10090 GN=Safb PE=1 SV=2	[more]

BLAST of Carg20619 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HP51	5.9e-54	98.29	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1HLT5	5.9e-54	98.29	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1I361	1.7e-53	97.44	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1I474	1.7e-53	97.44	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1I0W1	1.7e-53	97.44	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita maxima O...	[more]

BLAST of Carg20619 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	7.1e-36	70.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	7.1e-36	70.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	2.6e-30	64.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	6.5e-29	64.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	6.5e-29	64.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..116 e-value: 4.9E-21 score: 85.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 44..114 e-value: 3.5E-16 score: 58.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 42..120 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..122 e-value: 3.6E-27 score: 97.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 8..118
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 8..118
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 30..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20619-RA	Carg20619-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding