Carg20272 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20272
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 4539019 .. 4541680 (-)
RNA-Seq ExpressionCarg20272
SyntenyCarg20272
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGGATTACGCCATTGGGGAAGCGGTCCAGCAACCAGAAGTGTCTGAAGTAAAGGTCCTGCTTCTGTAACAGCTTGCAGAAGCTTGCCTTTCTGAGGTAACGCTTTTCCCTTTACAAGATTATCAATCACTGCAGAAAATGGATCGAGCTTTTCTGTTTTGGGAGTGTCCACGCCTGTGGCCAGAGGCTGCGGGGCATTATACTCCGTGACATATGGCTGATTTACAAAGCTCATTTTGCATGAATCAGCCATGTTTGCAGTAGAGAAATCTGGCGATGAAACTCCATCAAAGAAAGAATCTGCTGGTGAAGAACCATAAGATTGGTGATTATAAGTTTCATAGAGACTGTTTGATTCTGTGATGCTTGAATTTGCTTTGGTGGGTATGTTGAGAGGGCTTTCAGCTTGGAAAAGAAGCAGAGCTGGTAATTCAGTTGCAGTAGTAGTTGGCACAAATTTGCTCATCAGTTTCTGCAGCTGATCTCTTGCTTCGTCTCTTTCTTCATATGCTGCCTGCAGGAGAAGAAGTAAGCTCTTCACTTTCTCTTTGTTCTTTATACTTTCTTCATTTGCTTCCATTTTTAAGGACTCTAGTTCGAAAGTCGTCTGCATGAGTTTCTGCTTTAACTCCTCCACGTTCTGCAAATTCAAACTAGATTTGTCAGTATCAGCAGAACAAAAGATTTCTTCTAAATAGAGATAGAGAATCCCCATTACAGGCTCATTGACAAGATAAGAGAGAGAAAGAGTGGGTAGATAGTGATACACTACTGGGGAATCAGGTTGGAATTCAAAGTCCGTTGTCAAATAATGCTGCAAATTAGGCACCATAAATCAATCCTTAGGAATAACATAAGGAATTATTCTCATCAATACCGACATATTCTTTTCCATTTGCAACCAAACATGCTTAGATCAAAAAGGTCAGCACACACATGTGAACAGCACAAACACTGTTACTCCCCACCCCTGCTGCTACTTGGAACAAGACAAATAGAGCATTTGTAGTTCTTTTCCCCCGCAAGAGAATAGAGAGGGAAAAAAAAAAAAAAACCTGTGTTGTAGGAAATCATTATGGCATCTAAGTTGGATGACCTTAGACGATCATTTTGCATTGAAAACAGAAAACAGAGTGAGGGAGAGAGAGAGGAAGATCAAACAAACAATGATTGTAAAGTAAAGGCCTTCAAAAATTTAGAAGACCCAGAAGAAGAAATGAACTGAACCAACTGTTAGCACATGAACAGAGAGAGAAAGAGAGAGAGAGACCCACCTCCTGAAATCTCCACAAACTGCTCAAGTCCTCCATGGTTTCTCCTGGTTGCTCAAGAGGAAGTGAGAAGGGAGGAAGATATAGGGGGTGTTTAAGAAAGAAAGTTGGACCTTGAGACATTTATAAATTGATGAGAATGATAGGACAGGACAAGCTAGAGAGAAAGAGAGAGAGAGAGAGAGAAATGGTTTTTTTTTTTTTTTTTTTTATTCCACAAAGTTGCAGAGAAAGGTAGTCGGCGTCAAGAAAGAAAAATAATAGAGAAAAAAAAAAGAAAGAAAAGAAAGGAAGAGAGGGTCATGTATAGAAAGAAATGAAAATTCCAAATTCTACGCCCAAGAACAGGGGCGTATTGAATTCCATTATAAACCCCTTCATCTCTTTGCCTACTTCTCTCTCTCTCTTTGCTCAAAAAATGGAAACACTTCTCTCTCTCTCTTTGCTCAAAAAATGGAAACACTTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCACATGCAGGTCAAGCAGTAAAGACCGGTTAGATTTTCCTTGTATAAATTCCCATCCGAAACCCACCTTTCTAGATTATCTCCTTTGAAATTTTATTTCCCTCCCACAGATCTCTCGTCTCTCTCTATCTACTGTGATATTTTTTACGTGTAGAAAGGGGTTGGTACTTGTTAAAGAATGGGCCCACTAAAAGCCCTCATTGTCTTCCATTTCTATGGTCCTAGTTCTTGATACCACTTTAAACTGATTTTATGTCTTACAGATTTCTATTTCTTTTTTGTCTCTACAAGAATTTTGAGTAAGAAATTGTGATGCAGATATGTTCATTGGAAAGGGCTTCTGTAGAAACTCGTTGGTAGAGGTTATATCAACGCCAAAATTTACCATATTCGTCAAAAGTTTTTACCAAAATTTACCAAATAACCCAGAAACAGTAACAAAAGCCGCCACTATAACGCCTCCTTCAATTCAACTGCACCACCTCCAGCGACTATGTTTTTACGACGAAAGTTACGTAGGTAACAGCAGTGAACGTGAAAGCCAGCGGCAATGAGCGGCAAGCCCTTAAAGTTGGCAGAGGCAGAGTGTGAGAGAATTGGAATCTTTGGGCAAATGGGATTGAAAACGGCGGCTGAAAAGTAAAGGGGTAGGGATTTTTCAAAGCAACACCGTTGACGTTGTCGAGAGAGTTACCTTCTCCTCATGCGCCACCTAAACGGCGGAGAAAAAGGTGACGATCCTCCTCGCCTGACAATAGTATCGCTATGTCGGGAGAAGGGGATCTCACCCGATACACTGTTTGATGACGACGAGAGAAAATGCATTGAGATAGACTAGTTTAAACAAATCTATTAAGTCTTCAAATTTTTTATCGATCATTTTTGTCAAAG

mRNA sequence

ATGGTGGAGGATTACGCCATTGGGGAAGCGGTCCAGCAACCAGAAGTGTCTGAAGTAAAGAGACTGTTTGATTCTGTGATGCTTGAATTTGCTTTGGTGGGTATGTTGAGAGGGCTTTCAGCTTGGAAAAGAAGCAGAGCTGCTGATCTCTTGCTTCGTCTCTTTCTTCATATGCTGCCTGCAGGAGAAGAAATATGTTCATTGGAAAGGGCTTCTGTAGAAACTCGTTGGTAGAGGTTATATCAACGCCAAAATTTACCATATTCGTCAAAAGTTTTTACCAAAATTTACCAAATAACCCAGAAACAGTAACAAAAGCCGCCACTATAACGCCTCCTTCAATTCAACTGCACCACCTCCAGCGACTATGTTTTTACGACGAAAGTTACGTAGGTAACAGCAGTGAACGTGAAAGCCAGCGGCAATGAGCGGCAAGCCCTTAAAGTTGGCAGAGGCAGAGTGTGAGAGAATTGGAATCTTTGGGCAAATGGGATTGAAAACGGCGGCTGAAAAGTAAAGGGGTAGGGATTTTTCAAAGCAACACCGTTGACGTTGTCGAGAGAGTTACCTTCTCCTCATGCGCCACCTAAACGGCGGAGAAAAAGGTGACGATCCTCCTCGCCTGACAATAGTATCGCTATGTCGGGAGAAGGGGATCTCACCCGATACACTGTTTGATGACGACGAGAGAAAATGCATTGAGATAGACTAGTTTAAACAAATCTATTAAGTCTTCAAATTTTTTATCGATCATTTTTGTCAAAG

Coding sequence (CDS)

ATGGTGGAGGATTACGCCATTGGGGAAGCGGTCCAGCAACCAGAAGTGTCTGAAGTAAAGAGACTGTTTGATTCTGTGATGCTTGAATTTGCTTTGGTGGGTATGTTGAGAGGGCTTTCAGCTTGGAAAAGAAGCAGAGCTGCTGATCTCTTGCTTCGTCTCTTTCTTCATATGCTGCCTGCAGGAGAAGAAATATGTTCATTGGAAAGGGCTTCTGTAGAAACTCGTTGGTAG

Protein sequence

MVEDYAIGEAVQQPEVSEVKRLFDSVMLEFALVGMLRGLSAWKRSRAADLLLRLFLHMLPAGEEICSLERASVETRW
Homology
[Close]
BLAST of Carg20272 vs. NCBI nr
Match: KAG7035427.1 (hypothetical protein SDJN02_02223, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MVEDYAIGEAVQQPEVSEVKRLFDSVMLEFALVGMLRGLSAWKRSRAADLLLRLFLHMLP 60
          MVEDYAIGEAVQQPEVSEVKRLFDSVMLEFALVGMLRGLSAWKRSRAADLLLRLFLHMLP
Sbjct: 1  MVEDYAIGEAVQQPEVSEVKRLFDSVMLEFALVGMLRGLSAWKRSRAADLLLRLFLHMLP 60

Query: 61 AGEEICSLERASVETRW 78
          AGEEICSLERASVETRW
Sbjct: 61 AGEEICSLERASVETRW 77

The following BLAST results are available for this feature:
BLAST of Carg20272 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035427.11.1e-33100.00hypothetical protein SDJN02_02223, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20272 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20272 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20272 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20272-RACarg20272-RAmRNA