Carg20208 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20208
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 378066 .. 380839 (-)
RNA-Seq ExpressionCarg20208
SyntenyCarg20208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTACTCGAGGCATCCATTTTGGCGATTTCAGTACGTTTCTTCTCTCATGATGGTCGATAAAATACACTGAGCGACGCAAGCAATTTCGAACGCGATGCATCCTTCAATGGCCGAGAGCTTGCTTTGGTAGTTTCATTTTCCTCCAGCGATTTGTTTTGCAGATCTGGTGAAACGAAGGTGAGTTTGGCTTAGACTAAATGTCCAAAATAAATATTGCGATGCTATTTACGGATGGATTTTATCATTCATGTTAACTGCGATTAGAGTGCTTATGATTCAGATGACATTAGCATAAGTTGAAGCATTTCTCCTATTGATCCTAAGAATTAAGTTGGCCTCATAAATTTTTGCACGAAGAGAAATATGATTCATATGTTACAAGGTTGGGCACCAAAATTGATTCGTGGACGATATTGGTAGAGCCGTAGTCTCACATTTCTAGTTCAGATCTTATAAGTACATTGTCATTATTGTTCTATAAGTTAGATTTTCTTGTGTGATAGATTGTTGATGTTGAGTAGAACTTGACCAATAGTTTTCATCATATTGTAAATTTGAATCGAAAGAAATTAATCTATCACTAAATTTCAATGAGAACATTTGATGCGCCATTTTTTCTTCCTGTCAGGATAAGCCCCTTTTTTCTCATTGTTTTTGGAACTTTCTCAACATTGCAGTCTATAGAACAAAAAATTTTACCTATTGGACCATCCCAACGAAATGATTATGAAAATAACAGTTGGGTTGAAATTAAGGGTGGGGGTGCAAAAGTAACAGCTTCCTGGATGCATTTGCTTCTAGCAACACTTTCAATTGGCTTTTCATTGGAACTTCTGTTTTCGTGCTCCTTACTTCACTGGCAGGCTACTTACAAACGCAGCTATGGAAGGTTTCTATCTGATTTTCCTTCTTACTGGTCATAATTCTTAAGCTTTGCCTCAGTATGTCAATTTCTGTGTCTCTCTTATATTTTTCTTGCTCCATTGAAGCCACTTGTTCTTTGAGGGCCTTTATGGTCTCCTCCTTTGCTAGCAATTCCGTTTGTAGTGCTTCTGTTCTCTCATTCGCTCCCCAGTACAATCCATCTCCTATCAAAGCAAGTATTGAGTGCCTTTTAGTGATCGAAAATCCAATGTGCTCGACTAATCTTAAATTCTCAATTTTAACAGCTAAGACAGAGACTATAAAATTTAGAAACAAAAGGAAATTTAGAATAGGCATACCATTATGTGTTCTCTGAATTAGGTCATCGAGCTCAATCTTGATAGCGTGATAAAGTTGCTTCCATTTCTCAATGGCTTCATCTCTGCGTGCTCTTTCCTGTTGTATCTGCTCAAAGATGGTATTTGGAGTTCTTTCAATCTCCCATTCTGTTGCAGTCTTCTCTCCAAAATTTCCCTCTTCAATCTCTGTCATCCTCTCTTTTACCTTCTTCCTCAACATCTTCACCTCCTCTCTGAGTTTCTTCTTCTCTGTTTTCCAATCTGCTTCCTTAAATGCAAACATCACCATGTCCTTTTCATGGGCTTTGACCTCTCTATCCATCTCAGACATTACTCCTCTCACTTCCTCCCTGAGCAGCCTTATCTTTTCTTTCAATCCTCCAACATCATCATCACAAATATTGCTCCCACCCTTGCTTGAGCACACACCCATCTTAGTGAAGCCTTTGCTTCTTCAGCCTTTCTGGGTTGCCGAGTGAGTTTTCAAGCTGGTCTTATAGATAGAAATTGAGGGACAAAGATGTGTTTGATGTGAACTCTGTCCAAAAGCTCTTCCATAAGAGAGCTGCATTTGAGGTATCTATATTGGCTTCGCTTATCCCCTGCTCTTACTTAGCTAGCTCTCTCAGAGTTAATGATTAGTGGAAATGTCTATGAGACTCGTGAACGGCTGTCACTGTATGATTTTATACATGAAAAAACAGGGAGATTTGACCTGTGACCCCATTGGAATTAAGAATCTGATATGTGATAACTCACATGAGAAAGTTTTACAAAAAACTTAATCACGCTCGTATTATTTGGTAACTTTAGGTAGATTTCTGGCACTTTTTAAGAGGGCCTACAAGCTTTGAAACTTGGAAAAAGTATTAATAGTGGTGTTGTACTTGGACATTTTTTCTTTTCTTTTTATTTTTAATTCTTTCTACGCTTATTGCATGACAGGTAAGTTTCTCTTGTCCACACATATCATAGCCGATGGACACTTCGTTTGAACTTTTTCTTATGTTTATTTTAGCAAAATTCAATTTATTAAGTTATTATATGGTATGCTCTCTTCGAACGTTAAAGATTCGAGTCTCCACTTTAACGTATCATTGAATTTGAAAGAAATAACTAGAATTTCTTTTAGTTTAGACGATTCTTCCGGAAAAAAAAAACTCTCATTCTTTTGCCCACACTTATAGCAACTGGAAAATTCTGCGTTACCAACCTCTGCACCAAATGGGAATGAGTTGGTAAAAGAATAGATTGGTTTAATGGTTAATACTAAACACAGTAACTTAGAGTAGAATGGGCATACATTTCTGAGGCTAAATAACGACAAATTTGAATTGGGATGGTTACCGACAAACCATAAAAGATTAGGTTTAATTTTGTCATAGGATTCCTTGGCTGAAAACGACTGCACTGATGGTGAGATGGAACCAAACTTCCACTCAAGAATGCATTTTGAGCTTCTTTCCGGCGACCTGCTGTGATGGCTACGTGTTTGCCTTAAACTGGTAAGAGTAAATTTCTTAGTTTCAAAATTGCTTCATTTTC

mRNA sequence

ATGCCCTTACTCGAGGCATCCATTTTGGCGATTTCAAAATTGAGGGACAAAGATGTGTTTGATGTGAACTCTGTCCAAAAGCTCTTCCATAAGAGAGCTGCATTTGAGGATTCCTTGGCTGAAAACGACTGCACTGATGGTGAGATGGAACCAAACTTCCACTCAAGAATGCATTTTGAGCTTCTTTCCGGCGACCTGCTGTGATGGCTACGTGTTTGCCTTAAACTGGTAAGAGTAAATTTCTTAGTTTCAAAATTGCTTCATTTTC

Coding sequence (CDS)

ATGCCCTTACTCGAGGCATCCATTTTGGCGATTTCAAAATTGAGGGACAAAGATGTGTTTGATGTGAACTCTGTCCAAAAGCTCTTCCATAAGAGAGCTGCATTTGAGGATTCCTTGGCTGAAAACGACTGCACTGATGGTGAGATGGAACCAAACTTCCACTCAAGAATGCATTTTGAGCTTCTTTCCGGCGACCTGCTGTGA

Protein sequence

MPLLEASILAISKLRDKDVFDVNSVQKLFHKRAAFEDSLAENDCTDGEMEPNFHSRMHFELLSGDLL
Homology
[Close]
BLAST of Carg20208 vs. NCBI nr
Match: KAG7021434.1 (hypothetical protein SDJN02_15159, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 5.5e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MPLLEASILAISKLRDKDVFDVNSVQKLFHKRAAFEDSLAENDCTDGEMEPNFHSRMHFE 60
          MPLLEASILAISKLRDKDVFDVNSVQKLFHKRAAFEDSLAENDCTDGEMEPNFHSRMHFE
Sbjct: 1  MPLLEASILAISKLRDKDVFDVNSVQKLFHKRAAFEDSLAENDCTDGEMEPNFHSRMHFE 60

Query: 61 LLSGDLL 68
          LLSGDLL
Sbjct: 61 LLSGDLL 67

The following BLAST results are available for this feature:
BLAST of Carg20208 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021434.15.5e-29100.00hypothetical protein SDJN02_15159, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20208 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20208 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20208 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20208-RACarg20208-RAmRNA