Carg20060 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20060
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Location	Carg_Chr09: 3827303 .. 3830898 (-)
RNA-Seq Expression	Carg20060
Synteny	Carg20060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTAAAGACCTTGACACATTGCTACCTTTTCGGAATTCGGCTAGAAATTCTTCTCTCTGATCCTATCTCCCACGATTGCGCCGGCGACGTCGAACCAGTTAGCGGATTCTTCTGGATTCGAACGAAGTTTAGAGAGACTGCGAACTACGGTAGGTGGTGATGTCCCGTTTTACTAAAATTTATCTATGGAATTCGATTATCATTCCATTCTCGTATTGCTTGATTTTTTAGTATGAATGGAAGCTAATCTCGAGGAAACTTTTGCTTATTGCGGAGTTCTAACCTAGATGCGTTGAGTGATCCTTGTTCAAAAATTCCAGAAAATTAGCGATTCGCTAGTCATGCGCTGTGCTTTTTGTTCCAATCCTCTCGTTGACTGTTCTTCTTCCAGTGATCTTATACTATTATCAGTTTCTTGCATTCATCTGGATGTTCATTTCGTTGGTTTGTAGATAATTTTTTTAGAAAAGTATAGCAGATATAGTTGTCAGTTGCTGCGCATTAACTATATTCTGTTCTAGTATTCAAGAATTTACGATTGAATCTGTATGATTATTTCCGAATAATTGCGGTAGTTGCGAGCTTAACTTCATGGAAATTTCTTGTTCTCGTGTTTTGCTTAAAATTTTGTCCCGGACAGTCGACCCCCGAGATTTATTCTTAGTAGCTATTAGTTTTGATTTTTCTCTCGTTGATGGCACACTCGTTACATGTTGAAATTGTGGAAACTATTTTCATTTTCTTGTGTTTTTCCGCACATTATGGATGTTATAATTGGTTCTATATTGTGCTGGTCACTAGAGAACCTATATGTGTTCGGAGAAAGATGGGCAATTACGATTGTGACAATGAACTTGGCGATCTCTTTCAGGTATTGGCTGAGATGCACGGTCCGGAGAAAGTACCCGACGATCCTGCCAATGAGGACAGCAGTGCCTCTGTTGAATTGTTGACTTCCATTAGTCGAAATGGTGACCTCCAGGAAGAAAATGATCTTGCAAACACGAATTTGGAAAACTCTAATGCTCTAGCAAATGGGCTTTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGATCGTATCACTACAGGTAGAATTACTCTTACTTTGTTTTTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCTAAAGGTGTGGCAACCTCTCCCTAGTAGACGCGTTGTAAAAACCTTGAGAGGGAAGCCCAGAAGGAAAAGCCCATAGAGGACAATATCGGCTAGCATTATAGCTTTTTCCTATAAAATAGAATCGTTTCCTTGTACGACTTTGACTAATTATATTATAGCAATATAGCTTCGAAGATTCTGTCACTTGCTAGGTTTTACATTATAAATGACATTCTCTCATAATTTACCTTTTTTCTTGTCCTGGATGCAAAAGTTTAACTTCTGAATTTCATGGCCTTTTCAATGTTGTGAAAAGTTATTACTTCAACCTTTACAGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCAACCAGGTGATTGACTTCTCTCTTCAATGGCCTCAATTTTATTATCTTTTATGGCTTTTAATTTAATGGAAAATTATTGGATAATATCATTGGCTGTCAAGGTTGTTTAATGATGTTCCCATTTCTTGTTTCTAAAAAAAACACATACGTATGATAATGACTATTTGTTTCTTTATTCTCTCCATTTTATCATAATCATTTTCTGTTTTTAATTCATTCGACATACAAGTGTCGAGATTGTGAATCGATGAAGTTTTTGAGTTGCCCTTTGTTCTTCCTGGCATTCCCTGTATTATTCTGTGTATTGATTTACATATAAAATGAACTCAAATTGGGCTAATATTTATTGGAAAACCTCAGTTGTTCCTTCTTATGGAAGATTTTGAACCTTCACATTTACATGTGGAACAAGAAACTTTTTAATGATGATTTTAAACCTCAGTTCTTCCTTCACAGTGTTTATTAATCAAAATATCATATGGTTTTTTTTAAATACATATGTAATTGGACGTGTTCTTAATGTAACAATTTTGTAAGAAGGCATGTTTCTCTGTTGAAGTTTAGGCTAAAGATCTGTTGAGTGTGCAAATATTAGTTTCATGATCTGTTATAACCATACTTCTTAGGCCGTAAATCATGATTTTGTTTTGCTTTCTGAATGTTTGAGCTTACTTCTGGCAATGCCATGGGAAAAAATCATTTTGCATATAGTTTTCATGATTATATGTAATGCTCTTTACCTTCTCCTTTCTTTGACGGAAATTACTGGGTACTTCTTCCTTTAAGATTAGAGGTTCAAATCTTCATGCCTCAACGTTTATTATACGAAAAAAAGAACGAAGTAAAATTTTTTAACTACTCCAAAGGAAGCTTATCTACTAGATACTCAGGTCCAAGTGTACTATTTAAGACATTGGTAATTTGTTTGAAGCTTTGAGAGAATTTCTCATCTTTTTGCGTTTATATGTTATGTTTTCTACCTTTAGTGGAAATTACCGGGTACTTCCTCCTTTTAAGATTAGAGGTTCAAATATTCATGACCCAACATTCATTATACTCAATTTATTGTACGAAAAAAAGAATGAAGTAAAATTTTTTAACTACTCCTAAGGAAGCTTATCTACTAGATACTAAGATCCAAGTGTACTATTTAAGATATATATACTCTACTAGAATCAGTTCCTTGTGTTTTGATGGCTTGTACCTCTTCGCTCCTGAACCTGATTTCACTCTAAACTCGGTTTCGAATCTTTGATCGGTATCCTTTCCTGGCCATTCCCTTCCCTACTCATCTCATCATATAGTCTGCATCAATCAGTGGTATAAATTATAGCATTCATACGCTGAGAAATTACTTGCTCGGTTTTCACTCGTACTGATTACCACAGAATGAAAGACTCCTCCAGATTTCTGTCTCATAATTTGGACCCTCGTCAAATGTCAATAGATTAATTGCTTATTTGGTATCTTATTGAACAAAAATGGTGATATTAATTGCCTAGGCATTCATTTGCAGCTCATTTAGCTGATTGTTTATGCACTATACATTGAAATATTAACTATTTTTTTGTCACGAGAGATCAGTCGAGGTGCACGCAAGCTAGCTTCGAGCCTTGTCTCATTTTCCTCAAATATTCCTTGTTGTGTACAGATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGAAGATTGTACGTACTCTACAGGCCCTTTTCTCTCTTCACTGAAAATACTGCGATAGAAAGGCTCTGTGTTTATGAACAATCAATTTTGAATGAACAACATTGGTAATTTATCCATTTGTAAGTTAAGAGTTATGGCTCTGTCACTCTCTCAGGAAAATTTTTAGTCACATATATGTAAATACTCTTTCTTTGACACTATCAATTTTATTTTGCTC

mRNA sequence

GAGTAAAGACCTTGACACATTGCTACCTTTTCGGAATTCGGCTAGAAATTCTTCTCTCTGATCCTATCTCCCACGATTGCGCCGGCGACGTCGAACCAGTTAGCGGATTCTTCTGGATTCGAACGAAGTTTAGAGAGACTGCGAACTACGGTATTGGCTGAGATGCACGGTCCGGAGAAAGTACCCGACGATCCTGCCAATGAGGACAGCAGTGCCTCTGTTGAATTGTTGACTTCCATTAGTCGAAATGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCAACCAGATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGAAGATTGTACGTACTCTACAGGCCCTTTTCTCTCTTCACTGAAAATACTGCGATAGAAAGGCTCTGTGTTTATGAACAATCAATTTTGAATGAACAACATTGGTAATTTATCCATTTGTAAGTTAAGAGTTATGGCTCTGTCACTCTCTCAGGAAAATTTTTAGTCACATATATGTAAATACTCTTTCTTTGACACTATCAATTTTATTTTGCTC

Coding sequence (CDS)

ATGCACGGTCCGGAGAAAGTACCCGACGATCCTGCCAATGAGGACAGCAGTGCCTCTGTTGAATTGTTGACTTCCATTAGTCGAAATGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCAACCAGATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGA

Protein sequence

MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

Homology

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: KAG7024708.1 (hypothetical protein SDJN02_13526 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.9 bits (468), Expect = 3.4e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSL 60
          MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSL
Sbjct: 1  MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSL 60

Query: 61 NSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG 99
          NSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG
Sbjct: 61 NSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG 98

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: KAG6591843.1 (hypothetical protein SDJN03_14189, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 3.4e-35
Identity = 98/156 (62.82%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MHGPEKVPDDPANEDSSASVELLTSISRN                               
Sbjct: 62  MHGPEKVPDDPANEDSSASVELLTSISRNGDLQEENDLANTNLENSNALANGLSSMLINI 121

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS
Sbjct: 122 IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 181

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: XP_022936774.1 (uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata] >XP_022936775.1 uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 8.6e-31
Identity = 92/156 (58.97%), Postives = 93/156 (59.62%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDSS SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: XP_023535159.1 (uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535160.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535161.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535162.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-30
Identity = 91/156 (58.33%), Postives = 93/156 (59.62%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDS+ SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSNVSVELETSISRNGGLQEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLE APFPFIMQHASRISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITIELDQLLEDAPFPFIMQHASRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: XP_022976873.1 (uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976874.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976875.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976876.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976877.1 uncharacterized protein LOC111477110 [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 4.3e-30
Identity = 91/156 (58.33%), Postives = 92/156 (58.97%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDSS SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLE APFPFIMQHASRISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEDAPFPFIMQHASRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. ExPASy TrEMBL
Match: A0A6J1FEP4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.2e-31
Identity = 92/156 (58.97%), Postives = 93/156 (59.62%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDSS SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. ExPASy TrEMBL
Match: A0A6J1IKP2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111477110 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.1e-30
Identity = 91/156 (58.33%), Postives = 92/156 (58.97%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDSS SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLE APFPFIMQHASRISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEDAPFPFIMQHASRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. ExPASy TrEMBL
Match: A0A6J1F9C2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.7e-30
Identity = 92/163 (56.44%), Postives = 93/163 (57.06%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDSS SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ----------------------------------ELDQLLEAAPFPFIMQHASRISSVRK 99
                                             ELDQLLEAAPFPFIMQHASRISSVRK
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTVITSTFTELDQLLEAAPFPFIMQHASRISSVRK 120

[Close]

BLAST of Carg20060 vs. ExPASy TrEMBL
Match: A0A6J1CN29 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Momordica charantia OX=3673 GN=LOC111013092 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-22
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 9   DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRS 68
           D  A++   +  +L +S+ R  +ELDQLLE APFPFIMQHASRIS+VRKRVLSLNSILRS
Sbjct: 65  DSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRS 124

Query: 69  IQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG 99
           IQRR+DNIDRAI+MGN  DT SSQSS Q QHG
Sbjct: 125 IQRRVDNIDRAIAMGNLQDTCSSQSSLQPQHG 156

[Close]

BLAST of Carg20060 vs. ExPASy TrEMBL
Match: A0A6J1FIR1 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111445840 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 75/156 (48.08%), Postives = 79/156 (50.64%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH  EKV DD AN+DS  S EL  SIS N                               
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLE APFPFIMQHA RISSVRKRVLSLNS
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. TAIR 10
Match: AT1G79070.1 (SNARE-associated protein-related )

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 9   DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRS 68
           D  A +  ++  EL  S+ R   ELDQLLE AP PFI+QHASRISSV++RV SLN +L+S
Sbjct: 53  DSKALDTLNSQDELSGSLDRLVQELDQLLENAPLPFIVQHASRISSVKQRVSSLNLVLKS 112

Query: 69  IQRRLDNIDRAISMGNQPDTLSSQSS 93
           +QRR+DNID  +S     +  SS+++
Sbjct: 113 VQRRIDNIDHMLSANTTQEKASSETT 138

The following BLAST results are available for this feature:

BLAST of Carg20060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024708.1	3.4e-43	100.00	hypothetical protein SDJN02_13526 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6591843.1	3.4e-35	62.82	hypothetical protein SDJN03_14189, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936774.1	8.6e-31	58.97	uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata] >XP_0229367...	[more]
XP_023535159.1	1.5e-30	58.33	uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535160....	[more]
XP_022976873.1	4.3e-30	58.33	uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976874.1 uncharac...	[more]

BLAST of Carg20060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEP4	4.2e-31	58.97	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1IKP2	2.1e-30	58.33	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxim...	[more]
A0A6J1F9C2	2.7e-30	56.44	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1CN29	2.7e-22	70.65	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Momordica chara...	[more]
A0A6J1FIR1	3.3e-20	48.08	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]

BLAST of Carg20060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79070.1	1.6e-14	51.16	SNARE-associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028119	Snapin/Pallidin/Snn1	PFAM	PF14712	Snapin_Pallidin	coord: 28..74 e-value: 3.7E-9 score: 36.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98
IPR017246	Snapin	PANTHER	PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	coord: 29..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20060-RA	Carg20060-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex