Carg19841 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19841
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PSI subunit V
Location	Carg_Chr05: 4900007 .. 4901989 (-)
RNA-Seq Expression	Carg19841
Synteny	Carg19841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGATGGATAAGGGATAAGGTTACGTGGCAAGTTCCATCCAATGAGAAGAGAGGGTTGATCAAAGACAGGCTCCCACAAGTTTCCATGGCCAGCAACGACAATAAGCTTAAGCTAAATCCCAAAACCAAATCTAAAAATCTCACCTCATTCATCTTCTTCTCTGCCACTGATTCTTCCACAAGCCAAAGGCAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGGTAATCTAACCAACCATCATCTCCCAATTCTATTTCATCAGCCTAGCTTTGAGCTTTTTAAGAAATATTTCATGCCAACTAATGTATACTATTTCAAGGGATACTAACTTAAAATCTCCACAAATCAAACAAATATAAATGTATTAGTTGTATAAAGATGTGAGATTAGTTGTATAAAGATGTGAGATCCCACGGTTGTGGAGTGGAGAGGAGAACGAAACGTTCTTTTACAAGGGTGTGGAAACCTCTCCTTAGCTTCCGCGTTTTAAAAACCTTGAGGACACTATTTGCTAGACACTTGATGATGAGTCAGCGAATAATCTGACCCCGGAAAGAGAGTGGATTGGGAGGTCCCACATCGATTGGAGAAGGGAACAAGTGTCAGCGAGAACGCTAGGCCCTGAAGAGGGTGGATTGTGAGATCCCACATCGGGTGAGGAGGAGAATGAAACATTCTTTATAAGGGTGTGAAAACCTCTCCCTAGCAGATGCGTTGTAAAAACTTTGAGTGGAAGCCCGAAATAGATAGCCCAAAGAGGACAACATAGCTGTGGGTTTGAACTCATACAAAAAATATCATAGCCCGCCGGGAGAGTAGGCTGAGCCCTGAAAGGAGGTGGACACGAGGCAGCGTGCCAGCAAGAACGCTGGGCCCCAAAAGGGGGTGAATTGGGGGGGTCCCACATCGAGGAGAAGAGCGAGGACATTGGGCCTTCAAAGTGGGTGGATTGTGAGATCTCACATCGATTGGGAAAGAGAACGAAATATTTTAGGGTGTGGAAACTTCTCCCTACCAGACACTTTTTAAAAACTTTGAGAGAAAACTCGAAAGAGAAAGTCCAAAGAAGATAATATCTGTTAGTATTGGACTTGGACCGAGGTGTTTTGGGAGTGCATTTATTGTTAAACACTTCTCCGTATAATAATAAGCTATTGATATTGTTGCAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAGATTTTGTATCATCTTCTGTTCCTGCAATGTAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATGCCAAACCGCTTTGCTAGATCCTTTGTGATTGCATATTGATTTCCTTTCTAGAACTGTTATGTATGCACCCTCCTTCCATTTAAGAAAAGCTATTCTCAT

mRNA sequence

AGAGAGAGATGGATAAGGGATAAGGTTACGTGGCAAGTTCCATCCAATGAGAAGAGAGGGTTGATCAAAGACAGGCTCCCACAAGTTTCCATGGCCAGCAACGACAATAAGCTTAAGCTAAATCCCAAAACCAAATCTAAAAATCTCACCTCATTCATCTTCTTCTCTGCCACTGATTCTTCCACAAGCCAAAGGCAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAGATTTTGTATCATCTTCTGTTCCTGCAATGTAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATGCCAAACCGCTTTGCTAGATCCTTTGTGATTGCATATTGATTTCCTTTCTAGAACTGTTATGTATGCACCCTCCTTCCATTTAAGAAAAGCTATTCTCAT

Coding sequence (CDS)

ATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAG

Protein sequence

MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK

Homology

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BLAST of Carg19841 vs. NCBI nr
Match: XP_022929758.1 (photosystem I reaction center subunit XI, chloroplastic-like [Cucurbita moschata] >XP_023545880.1 photosystem I reaction center subunit XI, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG6598937.1 Photosystem I reaction center subunit XI, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029891.1 Photosystem I reaction center subunit XI, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 422.5 bits (1085), Expect = 2.1e-114
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg19841 vs. NCBI nr
Match: XP_022997609.1 (photosystem I reaction center subunit XI, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 420.6 bits (1080), Expect = 8.1e-114
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGFLLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg19841 vs. NCBI nr
Match: XP_023536879.1 (photosystem I reaction center subunit XI, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023538619.1 photosystem I reaction center subunit XI, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 207/217 (95.39%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSS+F SS TRAL+APKGLSVSPLRR+PARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg19841 vs. NCBI nr
Match: XP_022937709.1 (photosystem I reaction center subunit XI, chloroplastic [Cucurbita moschata])

HSP 1 Score: 409.1 bits (1050), Expect = 2.4e-110
Identity = 207/217 (95.39%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSPIASQLSS+F SS TRAL+APKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg19841 vs. NCBI nr
Match: XP_022965497.1 (photosystem I reaction center subunit XI, chloroplastic [Cucurbita maxima])

HSP 1 Score: 408.7 bits (1049), Expect = 3.2e-110
Identity = 206/217 (94.93%), Postives = 212/217 (97.70%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSS+F SS TRAL+APKGLS SPLRR+PARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSAFTSSNTRALIAPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg19841 vs. ExPASy Swiss-Prot
Match: Q39654 (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus OX=3659 GN=PSAL PE=2 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 5.1e-111
Identity = 202/217 (93.09%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSP ASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of Carg19841 vs. ExPASy Swiss-Prot
Match: Q9SUI4 (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAL PE=1 SV=2)

HSP 1 Score: 341.3 bits (874), Expect = 8.2e-93
Identity = 174/219 (79.45%), Postives = 192/219 (87.67%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFAS-STTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQ 60
           MA + SP+ASQL SSF+S S ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+ ILS+CLT+YGI+SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of Carg19841 vs. ExPASy Swiss-Prot
Match: Q41385 (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAL PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 8.2e-93
Identity = 174/219 (79.45%), Postives = 190/219 (86.76%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPA--RTHSFTIRAIQADKPTYQ 60
           MA  TSP+ASQL S F   TT+ALV PKG+S   LR  P+  R  SFT+RAI+ +KPTYQ
Sbjct: 1   MAATTSPMASQLKSGF---TTKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAA GL+ ILS+CLTMYGIASF EGEPS AP+LTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQ+ADGWAKFTGGFFFGG+SGV WA FL+YVLDLPY+ K
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

[Close]

BLAST of Carg19841 vs. ExPASy Swiss-Prot
Match: P23993 (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAL PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.7e-80
Identity = 154/218 (70.64%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 1   MATA-TSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQV 60
           MATA   P+ASQ+  S       A   P+G+S + L R P     F ++A+++DKPTYQV
Sbjct: 1   MATAYAPPMASQVMKS-----GLACSKPRGMSGASLTRRP----RFVVKAVKSDKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
            GPLRNT   G AG+L A GL++ILS+CLTMYG+ASFNEGEPSTAP LTLTGRKK  D+L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTA+GW++FTGGFFFGG+SG +WAYFLLYVLDLPYF K
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

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BLAST of Carg19841 vs. ExPASy Swiss-Prot
Match: O78469 (Photosystem I reaction center subunit XI OS=Guillardia theta OX=55529 GN=psaL PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.8e-32
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 0


Query: 58  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPF 117
           Q ++P N DPF+G+L TP+T+S      LSNLPAYR  ++PLLRG+E+G+ HG+ LVGPF
Sbjct: 3   QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62

Query: 118 VKAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPD 177
            K GPLRN+  A  AG  +A GLI I++ CL +YG+ SFN  +                +
Sbjct: 63  YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------E 122

Query: 178 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
           QLQ+A GW +FT G+  G I G  +AY L+
Sbjct: 123 QLQSAKGWRQFTSGWLVGSIGGASFAYILI 138

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BLAST of Carg19841 vs. ExPASy TrEMBL
Match: A0A6J1ET47 (PSI subunit V OS=Cucurbita moschata OX=3662 GN=LOC111436247 PE=3 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.0e-114
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Carg19841 vs. ExPASy TrEMBL
Match: A0A6J1KBZ8 (PSI subunit V OS=Cucurbita maxima OX=3661 GN=LOC111492490 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.9e-114
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGFLLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Carg19841 vs. ExPASy TrEMBL
Match: A0A6J1FBZ4 (PSI subunit V OS=Cucurbita moschata OX=3662 GN=LOC111444030 PE=3 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.2e-110
Identity = 207/217 (95.39%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSPIASQLSS+F SS TRAL+APKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Carg19841 vs. ExPASy TrEMBL
Match: A0A6J1HKH3 (PSI subunit V OS=Cucurbita maxima OX=3661 GN=LOC111465381 PE=3 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.5e-110
Identity = 206/217 (94.93%), Postives = 212/217 (97.70%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSS+F SS TRAL+APKGLS SPLRR+PARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSAFTSSNTRALIAPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Carg19841 vs. ExPASy TrEMBL
Match: A0A6J1D7U0 (PSI subunit V OS=Momordica charantia OX=3673 GN=LOC111018169 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.0e-110
Identity = 206/217 (94.93%), Postives = 212/217 (97.70%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRR+PARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKAPDQLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Carg19841 vs. TAIR 10
Match: AT4G12800.1 (photosystem I subunit l )

HSP 1 Score: 341.3 bits (874), Expect = 5.8e-94
Identity = 174/219 (79.45%), Postives = 192/219 (87.67%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFAS-STTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQ 60
           MA + SP+ASQL SSF+S S ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+ ILS+CLT+YGI+SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

The following BLAST results are available for this feature:

BLAST of Carg19841 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929758.1	2.1e-114	100.00	photosystem I reaction center subunit XI, chloroplastic-like [Cucurbita moschata...	[more]
XP_022997609.1	8.1e-114	99.54	photosystem I reaction center subunit XI, chloroplastic-like [Cucurbita maxima]	[more]
XP_023536879.1	1.1e-110	95.39	photosystem I reaction center subunit XI, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022937709.1	2.4e-110	95.39	photosystem I reaction center subunit XI, chloroplastic [Cucurbita moschata]	[more]
XP_022965497.1	3.2e-110	94.93	photosystem I reaction center subunit XI, chloroplastic [Cucurbita maxima]	[more]

BLAST of Carg19841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39654	5.1e-111	93.09	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q9SUI4	8.2e-93	79.45	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41385	8.2e-93	79.45	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea OX=...	[more]
P23993	2.7e-80	70.64	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare OX=45...	[more]
O78469	2.8e-32	46.67	Photosystem I reaction center subunit XI OS=Guillardia theta OX=55529 GN=psaL PE...	[more]

BLAST of Carg19841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ET47	1.0e-114	100.00	PSI subunit V OS=Cucurbita moschata OX=3662 GN=LOC111436247 PE=3 SV=1	[more]
A0A6J1KBZ8	3.9e-114	99.54	PSI subunit V OS=Cucurbita maxima OX=3661 GN=LOC111492490 PE=3 SV=1	[more]
A0A6J1FBZ4	1.2e-110	95.39	PSI subunit V OS=Cucurbita moschata OX=3662 GN=LOC111444030 PE=3 SV=1	[more]
A0A6J1HKH3	1.5e-110	94.93	PSI subunit V OS=Cucurbita maxima OX=3661 GN=LOC111465381 PE=3 SV=1	[more]
A0A6J1D7U0	2.0e-110	94.93	PSI subunit V OS=Momordica charantia OX=3673 GN=LOC111018169 PE=3 SV=1	[more]

BLAST of Carg19841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12800.1	5.8e-94	79.45	photosystem I subunit l	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 59..211 e-value: 5.3E-57 score: 191.7
IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	GENE3D	1.20.1240.10	Photosystem I PsaL, reaction centre subunit XI	coord: 54..217 e-value: 5.5E-72 score: 242.4
IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	SUPERFAMILY	81568	Photosystem I reaction center subunit XI, PsaL	coord: 60..216
None	No IPR available	PANTHER	PTHR34803:SF5	PHOTOSYSTEM I PSAL, REACTION CENTRE SUBUNIT XI-RELATED	coord: 10..217
IPR022980	Photosystem I, reaction centre subunit XI	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 10..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19841-RA	Carg19841-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I