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Carg19742 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCTTTATACTTCTTCTCCTTCCTTCCTTCTTTATACTTCTTCTCCTTCTCAAGTTCTACGCTTCCTTTGTATGCTAACTAAGTTTGTTTGCCGAAGTTGAAGTTCCATTTAGCCAAAACCAACTGGAAATCCAGACTTTCATTTACAACTCTGGAATTTCTTTATTGTTGTATCCTGAACCCTATTCCCAAGCAATACTTGAGGTCGTAATCTTGTAGAAATGGCGCTGCAACATACACTACGTTTACCCTTTCTGGTTTTGCCTTCTTCTAATTGCCGATTCCAAGGGGGTGCTTTCGCTTTTGCGGCCACCAATTCGCAACCCAGCGATGCTTTCGCTTCATGGAGGTTGAAGTCTTCTTATCCTTCATCCATCGCTTCGGTGAAGTTGTCTTTCCTGGTAATCTCGTTCTCTAATCCATAGACTTATACTGTGCTTGTCATATGATGTATCTTCGATTTAGATAGCTAAAAGTGTTTTCTAGTTGATTTCAAAACTTCTTTTAAGAAACATCTGAAAGTTGATTCTCCAAAAACTGATTTTAGAGTGATTTTCTGGGAATCGTTTTAAATTCAATTCATGGTAACTTGATATTTGTGGATTCTTTTTAGACATGGTGCAACTAAACAAACTTGTATTCAAGTCATTTTTAATAGAACGTAAGTAATCATCAAATGATTTTAGAAAAAGTAAAGTTTATGCCGAACTCACCCTTTGGTGCTTGTTTCTTGTTACTTGGGGAAATTTAATGTGAAATGCTTCATGTTTTGATCTGTAGGGTAGTTATTTTAGAAGCAGCCCTCGAAGGGCCTACAAAACTGCTGGATCCCTCTGGTCAGGTGATGGAAAGAAGAAAAAAGGACAAGCAGATACGGACTCCGCTGAGGAAGATGATTCTTCTTCAGCAGAGCAGCAAGATCTTGAGCCTATGGATGTAGAAGAGAGACGGGAATGGAGGGAGAAGATTAGGGAAGTGATTGATATGAACCCCGATGTTGAGGAGGAGATGGACATCATGGAAAGGAGAAGGAAAATGCAAAAGCTTCTAGCTGACTATCCTCTTGTTGTGGAGGAGGAAGATCCTAATTGGCCCGAGGATGCTGACGGTTGGGGTTTCAACTTGGGTCACTTTTTTGATAAGATCACCATCAAAAAATAAGAAAAAGGATGATAAAGATGATGATGATGATAAAGATGACACTGATGATGAAGTAGTTTGGCAAGATGACAACTACATTCGTCCAATTAAGGACATAGCAACTGCTGAATGGGAGGAGGCTGTATTTAAGGACATTAGTCCACTAATCATTCTTGTACATAATCGCTACAAAAGGTATGCTCTTTGAAGTCATCTAATTGCCTGCCCTAAGATTATTAACATTAGGATCTTGTGCGGGTTGTTTGTCTTTATGGCCATTGATCTCATTTATCTATATTTTTTCCCGTGGATTCCAAACCTACAATGCAATGCAAGGATCCCTATTCGTAGAGGTTGAATTATTTTATTCATATTTGCATTTTGTACACCCAAATGGTTGTCCGATGGTGAGAAGTTAGGAGGTCTGCAGATACTCTCTGGGTTCTAGTCTTGAGTTGAGAACTTAATAACTTACAATAGATGGGATCTTTTGGGCGGGCAACATGAGCATAGTGCAAGGAATAGGCTCTTTGATATTTTCCGGTGACTCTACCCATTGTGATTGTAATGTGGTAAGCTCCCCTATATTAACACTCTTGTGCCACTACCAGTACCCAACCAATGTGATTTTCTCTTCAATCACTTTTCGGGTGGTGTGGAGGTTGTGTTTGTTGATCTTACAAAACTTTCCTTGAGACGTTTGGAAGGAGAAAAATAAGAGGGTCAATTGAAGAATATAATTAGAAGGAATTATATGCAGGACTTCGGACCATGACAACTTAGTCTTTTTCCTTTTCTTTAAAAGAAGAAGAGTGCCCTTTGCTAGAGGCCCTCACATTTCTTGGTTAGGAATGATGCGAGGGAAAATTGGGGGTCAGATACGAAATTTTGATATGTATTTTTTAACATTTTATTTTTACTTATGCTTAAACTGTTATTTGATGGCTGTAGTGGTTTAACAATAACATGGATCACAAGATGATCTGTATGTGGCAGAAATTTGCATATTTTGAGAATCCTGTCTTGTATGTATTTACCTTCACTCAGGCCAAAGGAAAATGAAAAAATTCGCAAGGAGCTAGAGAACGCCATCCACATAATATGGAATTGCAATCTGCCTTCGCCAAGAGTAGGCTTCTCCTATTTGTTGACTGTAGTTTACTCATCTCTCTACCTTTAGCAAATGTCATTAGTTTAAACATATTGTTGTTGATTGCAGTGCGTTGCTGTTGATGCTGTTGTTGAACGCAACTTGGTCTCTGCTCTTCAAGTGTCTGCCTTTCCAGAGATTATCTTCACTAAAGCAGGGAAGATTTTATACCGTGAGAAGGGTAAGTGCGAAACCAAGAGAACAGACATTCTGTGATTTCTTTATTTTTTTGGCTCCAAATCTTGTGACTGTAGAATGAAACCTATTTCAATGTATGAGCTGAGGTCCGAGTTGTGGTTTGGTTCAGGATTTGTAAGTGCAGATGAGTTGTCCAAAATAATGGCGTTCTTCTACTATGGAGCAGCTAAGCCACCATGTTTAAGTGACGTTAGGGATTATCAGGAGGCGATCCCATCAGTTTCTGTTGATGCCTGATTATGCCATAGGAGGATAGGCAAAGTATATGCTCTTTTTGGTCTGTTGTAGATGAGGAGTTTCAGCAATCGGTTTGTTGGGGCAATCTTTTTTCTATTGAAAGGCCAATGTACTTTGTCTTTTAGTCCTGCAACTTCATGAGCTGTTCAAGGCTATTACCGAAATATGAAATGTATCATAGCTTAAGATGACATAGCGACAAGAGCAGGTACATGAGATCCTTGTATTATTTTTTTAGGTCAATTCGATTGGGTTCTTAATTAACTGCTCCTGCCACTATTTTAACATAGTTTATTTTTTTATTTTATTTGTTTCTCTACTACTTCCGTAAGCTGTTTATTCGAATTCCCTCTAATAAATAGGTGCTCTTCTGGATTCAAAATCTTGTTGGCGATGAGTGATGATGCCTTCGGTTAGTGACCATCAACCAACGTCGTTTCCATGGAAAAGGTAATCTTTTTCAGGCATCTCTTAACATTTGCAGACTCTTTCTACGTGCTAATTTGCATACATTGTAACATCTTCTCGAGTCCACCCTTGTAT CTTCTTTATACTTCTTCTCCTTCCTTCCTTCTTTATACTTCTTCTCCTTCTCAAGTTCTACGCTTCCTTTGTATGCTAACTAAGTTTGTTTGCCGAAGTTGAAGTTCCATTTAGCCAAAACCAACTGGAAATCCAGACTTTCATTTACAACTCTGGAATTTCTTTATTGTTGTATCCTGAACCCTATTCCCAAGCAATACTTGAGGTCGTAATCTTGTAGAAATGGCGCTGCAACATACACTACGTTTACCCTTTCTGGTTTTGCCTTCTTCTAATTGCCGATTCCAAGGGGGTGCTTTCGCTTTTGCGGCCACCAATTCGCAACCCAGCGATGCTTTCGCTTCATGGAGGTTGAAGTCTTCTTATCCTTCATCCATCGCTTCGGTGAAGTTGTCTTTCCTGGGTAGTTATTTTAGAAGCAGCCCTCGAAGGGCCTACAAAACTGCTGGATCCCTCTGGTCAGGTGATGGAAAGAAGAAAAAAGGACAAGCAGATACGGACTCCGCTGAGGAAGATGATTCTTCTTCAGCAGAGCAGCAAGATCTTGAGCCTATGGATGTAGAAGAGAGACGGGAATGGAGGGAGAAGATTAGGGAAGTGATTGATATGAACCCCGATGTTGAGGAGGAGATGGACATCATGGAAAGGAGAAGGAAAATGCAAAAGCTTCTAGCTGACTATCCTCTTATCCTAATTGGCCCGAGGATGCTGACGGTTGGGGTTTCAACTTGGGTCACTTTTTTGATAAGATCACCATCAAAAAATAAGAAAAAGGATGATAAAGATGATGATGATGATAAAGATGACACTGATGATGAAGTAGTTTGGCAAGATGACAACTACATTCGTCCAATTAAGGACATAGCAACTGCTGAATGGGAGGAGGCTGTATTTAAGGACATTAGTCCACTAATCATTCTTGTACATAATCGCTACAAAAGGCCAAAGGAAAATGAAAAAATTCGCAAGGAGCTAGAGAACGCCATCCACATAATATGGAATTGCAATCTGCCTTCGCCAAGATGCGTTGCTGTTGATGCTGTTGTTGAACGCAACTTGGTCTCTGCTCTTCAAGTGTCTGCCTTTCCAGAGATTATCTTCACTAAAGCAGGGAAGATTTTATACCGTGAGAAGGGATTTGTAAGTGCAGATGAGTTGTCCAAAATAATGGCGTTCTTCTACTATGGAGCAGCTAAGCCACCATGTTTAAGTGACGTTAGGGATTATCAGGAGGCGATCCCATCAGTTTCTGTTGATGCCTGATTATGCCATAGGAGGATAGGCAAAGTATATGCTCTTTTTGGTCTGTTGTAGATGAGGAGTTTCAGCAATCGGTTTGTTGGGGCAATCTTTTTTCTATTGAAAGGCCAATGTACTTTGTCTTTTAGTCCTGCAACTTCATGAGCTGTTCAAGGCTATTACCGAAATATGAAATGTATCATAGCTTAAGATGACATAGCGACAAGAGCAGGTACATGAGATCCTTGTATTATTTTTTTAGGTCAATTCGATTGGGTTCTTAATTAACTGCTCCTGCCACTATTTTAACATAGTTTATTTTTTTATTTTATTTGTTTCTCTACTACTTCCGTAAGCTGTTTATTCGAATTCCCTCTAATAAATAGGTGCTCTTCTGGATTCAAAATCTTGTTGGCGATGAGTGATGATGCCTTCGGTTAGTGACCATCAACCAACGTCGTTTCCATGGAAAAGGTAATCTTTTTCAGGCATCTCTTAACATTTGCAGACTCTTTCTACGTGCTAATTTGCATACATTGTAACATCTTCTCGAGTCCACCCTTGTAT ATGGCGCTGCAACATACACTACGTTTACCCTTTCTGGTTTTGCCTTCTTCTAATTGCCGATTCCAAGGGGGTGCTTTCGCTTTTGCGGCCACCAATTCGCAACCCAGCGATGCTTTCGCTTCATGGAGGTTGAAGTCTTCTTATCCTTCATCCATCGCTTCGGTGAAGTTGTCTTTCCTGGGTAGTTATTTTAGAAGCAGCCCTCGAAGGGCCTACAAAACTGCTGGATCCCTCTGGTCAGGTGATGGAAAGAAGAAAAAAGGACAAGCAGATACGGACTCCGCTGAGGAAGATGATTCTTCTTCAGCAGAGCAGCAAGATCTTGAGCCTATGGATGTAGAAGAGAGACGGGAATGGAGGGAGAAGATTAGGGAAGTGATTGATATGAACCCCGATGTTGAGGAGGAGATGGACATCATGGAAAGGAGAAGGAAAATGCAAAAGCTTCTAGCTGACTATCCTCTTATCCTAATTGGCCCGAGGATGCTGACGGTTGGGGTTTCAACTTGGGTCACTTTTTTGATAAGATCACCATCAAAAAATAAGAAAAAGGATGATAAAGATGATGATGATGATAAAGATGACACTGATGATGAAGTAGTTTGGCAAGATGACAACTACATTCGTCCAATTAAGGACATAGCAACTGCTGAATGGGAGGAGGCTGTATTTAAGGACATTAGTCCACTAATCATTCTTGTACATAATCGCTACAAAAGGCCAAAGGAAAATGAAAAAATTCGCAAGGAGCTAGAGAACGCCATCCACATAATATGGAATTGCAATCTGCCTTCGCCAAGATGCGTTGCTGTTGATGCTGTTGTTGAACGCAACTTGGTCTCTGCTCTTCAAGTGTCTGCCTTTCCAGAGATTATCTTCACTAAAGCAGGGAAGATTTTATACCGTGAGAAGGGATTTGTAAGTGCAGATGAGTTGTCCAAAATAATGGCGTTCTTCTACTATGGAGCAGCTAAGCCACCATGTTTAAGTGACGTTAGGGATTATCAGGAGGCGATCCCATCAGTTTCTGTTGATGCCTGA MALQHTLRLPFLVLPSSNCRFQGGAFAFAATNSQPSDAFASWRLKSSYPSSIASVKLSFLGSYFRSSPRRAYKTAGSLWSGDGKKKKGQADTDSAEEDDSSSAEQQDLEPMDVEERREWREKIREVIDMNPDVEEEMDIMERRRKMQKLLADYPLILIGPRMLTVGVSTWVTFLIRSPSKNKKKDDKDDDDDKDDTDDEVVWQDDNYIRPIKDIATAEWEEAVFKDISPLIILVHNRYKRPKENEKIRKELENAIHIIWNCNLPSPRCVAVDAVVERNLVSALQVSAFPEIIFTKAGKILYREKGFVSADELSKIMAFFYYGAAKPPCLSDVRDYQEAIPSVSVDA Homology
BLAST of Carg19742 vs. NCBI nr
Match: KAG7017170.1 (Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 669.1 bits (1725), Expect = 2.1e-188 Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0
BLAST of Carg19742 vs. NCBI nr
Match: XP_023551318.1 (thioredoxin-like fold domain-containing protein MRL7L, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023551319.1 thioredoxin-like fold domain-containing protein MRL7L, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 602.4 bits (1552), Expect = 2.4e-168 Identity = 320/351 (91.17%), Postives = 323/351 (92.02%), Query Frame = 0
BLAST of Carg19742 vs. NCBI nr
Match: XP_022929067.1 (thioredoxin-like fold domain-containing protein MRL7L, chloroplastic [Cucurbita moschata] >XP_022929069.1 thioredoxin-like fold domain-containing protein MRL7L, chloroplastic [Cucurbita moschata] >XP_022929070.1 thioredoxin-like fold domain-containing protein MRL7L, chloroplastic [Cucurbita moschata] >XP_022929071.1 thioredoxin-like fold domain-containing protein MRL7L, chloroplastic [Cucurbita moschata]) HSP 1 Score: 597.0 bits (1538), Expect = 1.0e-166 Identity = 320/351 (91.17%), Postives = 323/351 (92.02%), Query Frame = 0
BLAST of Carg19742 vs. NCBI nr
Match: XP_022969940.1 (thioredoxin-like fold domain-containing protein MRL7L, chloroplastic isoform X1 [Cucurbita maxima] >XP_022969941.1 thioredoxin-like fold domain-containing protein MRL7L, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 587.0 bits (1512), Expect = 1.0e-163 Identity = 313/351 (89.17%), Postives = 320/351 (91.17%), Query Frame = 0
BLAST of Carg19742 vs. NCBI nr
Match: XP_022969942.1 (thioredoxin-like fold domain-containing protein MRL7L, chloroplastic isoform X2 [Cucurbita maxima]) HSP 1 Score: 570.1 bits (1468), Expect = 1.3e-158 Identity = 307/351 (87.46%), Postives = 314/351 (89.46%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy Swiss-Prot
Match: Q9SKB6 (Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MRL7L PE=1 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 1.4e-83 Identity = 184/308 (59.74%), Postives = 223/308 (72.40%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy Swiss-Prot
Match: Q0DI48 (Thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=MRL7L PE=2 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 1.6e-53 Identity = 127/267 (47.57%), Postives = 173/267 (64.79%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy Swiss-Prot
Match: Q5QLS7 (Thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=MRL7 PE=2 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 7.1e-22 Identity = 59/134 (44.03%), Postives = 81/134 (60.45%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy Swiss-Prot
Match: F4JLC1 (Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MRL7 PE=1 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 2.3e-17 Identity = 87/257 (33.85%), Postives = 126/257 (49.03%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy TrEMBL
Match: A0A6J1EMP2 (thioredoxin-like fold domain-containing protein MRL7L, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435768 PE=4 SV=1) HSP 1 Score: 597.0 bits (1538), Expect = 4.9e-167 Identity = 320/351 (91.17%), Postives = 323/351 (92.02%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy TrEMBL
Match: A0A6J1HZ67 (thioredoxin-like fold domain-containing protein MRL7L, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468989 PE=4 SV=1) HSP 1 Score: 587.0 bits (1512), Expect = 5.0e-164 Identity = 313/351 (89.17%), Postives = 320/351 (91.17%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy TrEMBL
Match: A0A6J1HXQ7 (thioredoxin-like fold domain-containing protein MRL7L, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468989 PE=4 SV=1) HSP 1 Score: 570.1 bits (1468), Expect = 6.4e-159 Identity = 307/351 (87.46%), Postives = 314/351 (89.46%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy TrEMBL
Match: A0A5D3BBT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1159G00150 PE=4 SV=1) HSP 1 Score: 476.5 bits (1225), Expect = 9.6e-131 Identity = 260/348 (74.71%), Postives = 288/348 (82.76%), Query Frame = 0
BLAST of Carg19742 vs. ExPASy TrEMBL
Match: A0A1S3B4P3 (uncharacterized protein LOC103485750 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485750 PE=4 SV=1) HSP 1 Score: 476.5 bits (1225), Expect = 9.6e-131 Identity = 260/348 (74.71%), Postives = 288/348 (82.76%), Query Frame = 0
BLAST of Carg19742 vs. TAIR 10
Match: AT2G31840.1 (Thioredoxin superfamily protein ) HSP 1 Score: 311.2 bits (796), Expect = 1.0e-84 Identity = 184/308 (59.74%), Postives = 223/308 (72.40%), Query Frame = 0
BLAST of Carg19742 vs. TAIR 10
Match: AT4G28590.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). ) HSP 1 Score: 91.3 bits (225), Expect = 1.7e-18 Identity = 87/257 (33.85%), Postives = 126/257 (49.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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