Carg19493 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19493
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cotton fiber protein
Location	Carg_Chr16: 9793065 .. 9793457 (+)
RNA-Seq Expression	Carg19493
Synteny	Carg19493

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCATGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTTGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

mRNA sequence

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCATGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTTGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Coding sequence (CDS)

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCATGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTTGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Protein sequence

MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSPPFSSSIR

Homology

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BLAST of Carg19493 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254.6 bits (649), Expect = 4.6e-64
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60
           MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 120
           CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA
Sbjct: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 120

Query: 121 RSPPFSSSIR 131
           RSPPFSSSIR
Sbjct: 121 RSPPFSSSIR 130

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BLAST of Carg19493 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252.3 bits (643), Expect = 2.3e-63
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60
           MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 120
           CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKL YYGINSSEIDYEA
Sbjct: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYEA 120

Query: 121 RSPPFSSSIR 131
           RSPPFSSSIR
Sbjct: 121 RSPPFSSSIR 130

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BLAST of Carg19493 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 6.7e-31
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60
           MA+  +P++ R+KK+  KLTAF+RLC   R  SRR+RSF SD RTAGLRS L DE IVE 
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVEN 60

Query: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 120
            SVRKLER  S+   + EDDVD+R+QIFID F RQL LERQISL+LRY  +NSSE + E 
Sbjct: 61  RSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEE 120

Query: 121 RSPPFSS 128
           +SPP+ S
Sbjct: 121 KSPPYPS 127

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BLAST of Carg19493 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 4.3e-30
Identity = 78/125 (62.40%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDES-IVE 60
           MAE  +P+  R+KKAL KLTA VRLC V R  S+R+ SFDSD R  G+R +L D+S I E
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  KCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 120
               RKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +YE
Sbjct: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120

Query: 121 ARSPP 125
             SPP
Sbjct: 121 QISPP 125

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BLAST of Carg19493 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 4.8e-29
Identity = 76/128 (59.38%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVR----LCHVFRPPSRRMRSFDSDGRTAGLRSILGDES 60
           MAE  +P++ R+KKA+ K+TA +R    LC   R PS R+RSF    RT GLRS L DE 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEI 120
           I E CS+R+LER  S R G+ EDDVD+R+QIFIDNF R+L LERQISL+LRYY INSS  
Sbjct: 61  IGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGT 120

Query: 121 DYEARSPP 125
           + E RSPP
Sbjct: 121 EDEERSPP 128

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BLAST of Carg19493 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 78/125 (62.40%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDES-IVE 60
           MAE  +P+  R+KKAL KLTA VRLC V R  S+R+ SFDSD R  G+R +L D+S I E
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  KCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 120
               RKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +YE
Sbjct: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120

Query: 121 ARSPP 125
             SPP
Sbjct: 121 QISPP 125

[Close]

BLAST of Carg19493 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29
Identity = 76/128 (59.38%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVR----LCHVFRPPSRRMRSFDSDGRTAGLRSILGDES 60
           MAE  +P++ R+KKA+ K+TA +R    LC   R PS R+RSF    RT GLRS L DE 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEI 120
           I E CS+R+LER  S R G+ EDDVD+R+QIFIDNF R+L LERQISL+LRYY INSS  
Sbjct: 61  IGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGT 120

Query: 121 DYEARSPP 125
           + E RSPP
Sbjct: 121 EDEERSPP 128

[Close]

BLAST of Carg19493 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.5e-28
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDS-DGRTAGLRSILGDES-IV 60
           MAE  +P+  R++KAL KL A +RLC + R  SRR+ SFDS D +  G+R +L D+S I 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 120
           E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EARSP 124
           E RSP
Sbjct: 121 EQRSP 125

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BLAST of Carg19493 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 63/122 (51.64%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 8   VVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLE 67
           + LR+++ L KL AF+RLC + R   RR     S  RT   R++L D+      + R LE
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLR---RR-----SIYRT---RNVLEDDQ-----TARNLE 60

Query: 68  RGESSRNGSC---EDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGI--NSSEIDYEARS 125
           R  SSR  SC   EDDVD RA+IFI+NFRRQL LERQISL+LR YG+  NS E DYE   
Sbjct: 61  RDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEIL 106

[Close]

BLAST of Carg19493 vs. ExPASy TrEMBL
Match: A0A2C9UBN9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-11
Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 8   VVLRMKKALTKLTAFV-------RLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 67
           V+  +K+A+ KL   +       R+  + R  SRR R    + R  GL   + D    E 
Sbjct: 8   VLGHLKRAVKKLNFLLSFNLRRWRVASILRNVSRRRRRLSFNDR-LGLHGCIEDVESDEN 67

Query: 68  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 119
             VR L+R   +R+ + EDD+DQRA+IFI+NFRRQL+LERQISL+LRYY  NS   DY
Sbjct: 68  KRVRALQR---TRSYASEDDIDQRAEIFIENFRRQLLLERQISLQLRYYRGNSFTRDY 121

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BLAST of Carg19493 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.1e-06
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 72  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP 124
           S + S ++D+D +A++FI NF RQL +ERQISL+L+Y   N+   +Y  RSP
Sbjct: 81  SYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130

The following BLAST results are available for this feature:

BLAST of Carg19493 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015798.1	4.6e-64	100.00	hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577759.1	2.3e-63	99.23	hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6596691.1	6.7e-31	61.42	hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0052985.1	4.3e-30	62.40	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]
XP_022145292.1	4.8e-29	59.38	uncharacterized protein LOC111014780 [Momordica charantia]	[more]

BLAST of Carg19493 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19493 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHZ5	2.1e-30	62.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CW64	2.3e-29	59.38	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0L4Z8	7.5e-28	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3	2.1e-14	51.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1	[more]
A0A2C9UBN9	4.9e-11	44.07	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=...	[more]

BLAST of Carg19493 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	6.1e-06	48.08	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 78..108 e-value: 8.9E-9 score: 34.8
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 6..115
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 6..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19493-RA	Carg19493-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding