Carg19310 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19310
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-damage-repair/toleration protein DRT111, chloroplastic-like
Location	Carg_Chr03: 9965160 .. 9969898 (+)
RNA-Seq Expression	Carg19310
Synteny	Carg19310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGGTGGATTGTACGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCCGCCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCACCGACTCTACGCAAGCCATCGTCCGTTTTCGCGCCACAGACTGTTCTCAGATCTCAAAGCAAAATCAAAGCTGCCAACTTGGCGCACTCGAAGGCTTCAGTGTCCGAGCCGGTGGAGCAGTCTCTGCCGATTCTGGCTGAGGCTATTACGCAACCGGCGTTGGTGGCCGTGACGTCTTCGGTTGTAGAAGAGTATGATCCAGCGAGGCCGAATGACTACGAGGAGTATCGGGCGGAGAAGAACAGGAAGGCCAAGGAGGCCGAGATGAGAAAGGAGCTCGAGAGACGTAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGATAGAGAGTATTCCGATTCTAGGATAAATATTTCAGGCGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCACCATCGCCACCAAGTAGCGGAGACGGATTTACCATTGGAAAGTCGGAAACTGGCGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACAGCGGCACAAAGAATGATGGCTAAGATGGGGTGGAAGGAGGGGCAAGGGCTCGGGAAGCAAGAACAAGGTATCACCACCCCTCTGATGGCAAAAAAGACAGACCTGCGTGCTGGAGTAATCGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGACAACCTACTCGGGTTCTCCTGCTCAGAAACATGGTACGACGTTGTAGAATTCTGACATTTTGATGATTTGAAATGAATTTTAGGTAGCGGAGTTTGTTTTCGGTGCATTAGAATTTTAGTAGTTCTTTCCCGTTTGTCAGATTTCCATTAAACTTCAGAAATTCTTGGTTAGATAGGAGCAATCTAGACAGGTTTAACGTAACCAATCATATCATTCTCTCATAGTTGCTGTTGGATGATGAAAGTCTCACATCGGCTAATTTAGGGAATGATCATTGGTTTATAAACAAAGAACACTCTCTCCATTGGTATGAGGCCTTTTGGGGAAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCACTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAGTCATGACCTAAACTTAGTTGTGCTTGGTAAATCCTCAAATGTCGAACAAAGGACTCCAAAAGAAAAGGAGTCAAGCCTCCTCGAAGGCAGTGAAAAATGACTAAGACTCCAAAGGAGTCGAGTCTCGATTAAGGAGAGGTGTACTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCCACATTGGCTAATTTAGGGAATGATCATGAGTTTATAAACAAAGAATACTCTCTCATAATTGAGCTATGAGGCCTCTAATTGGGGAGCCCAAAAACAAAGCCATTGAGAGCGTTATTGCCTACAAAGAGAGTGCAGAAAAATCATAACGCCATTTTGCGTGTGGAGACGCGCAGTCGTCTATGAGGAGGCGTGGCTAACAGTTGCAAATTCCATTATTAGCACGCGATTCTTCTGTTAATCCATCATTAAAATGCATGCACTTGAGAATTTGTTTGATTGTCCATATTGTGATGAAAGTTCTATTCCTAATCCTAACCTTGGTATCTTTAGCTGCTTGCCCATTGGTGTACGCTTATCCAGTTTTCATGTTAGACTACGAAGGCGGAAGGATTCTTAGTTTCTAGTATTGTCGCTGTCAGCGCCAGATGGCATTTTTTATCAGCTAACTGCTCAACCAGTTCTTTATAAATCGTTGTTATCCGAAAGTTTTCTTTCCCTGTACTACTGAGTGCTAATCAGAAGGAATAAGATATGGACTAAAAAACCCTTAGTTGCAATTTGCATATAGAGTTCTTCTTGTTTGGAAAATTTTAGAGGGAAAAACATTAAATCATAGATTATTAGTCTATCTGGAAACAAATTAAAAGGCAGAGAACGTACAAACCTTTACTCGCGTGATTTGTATAGAGATGCCTTCATCAATGTTACATCTTTTGCTAGATCATTTTAGGTTTTAAGTTTATTATATACCATATCAGAGATTAAAAATCTACCCCGAGGGAGGTGAGGGGAGGTGGGGAGGAGGATGAAGGTCTATATAGCATGTTCTAGGGGTTGTACGAATATCAAGGCATACCATATTTGGTTTTCTGATTTTATTGAATTTGATTCATTGTTATATTAAGTTGACGAATGTCATCTTACTGGTTGGATATAAAGTATTAGCTAACTGGAATATTGCTACTGGCCTCTAGAAGATGGAAGGTTGGAATTAGGCAACTTAAGGAAGAGAAGTGAGGCAATACTACAGAGAAGCTCTGGAGATATGCTAAAGAAAGTTATGAGATGTGCAGTAAGCTGGTTATGAACAAATATGGACGTGAAGAAGGAAGAAAATAGGAAGTTTCCTCTAGAAATGAAATTTGGTTGTTTTCAAAGCCTTTCGTGGTGACGCTATCAATCTCTGAGCAAAAAAGCTGGGAAGCTTAGAAGGAACTTCTCTCTAGGCTGATGTTACGAAGCCATTGTTTAGGGATTATGAACTCGAAGAAATTGAATATTATTAGGAATAGATTAGTTCAAAGAAATAGGGGTTAGGGCTTAGAGTTGGGATCTATCAGAACTGCATAATTCTTGTCCTAACCATGCTTCCGTCTGTAATGAACTAAGAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTGTCTTTACGTTCTTCAATTGACTCACTCCTCAGTTTTGCCCGTAAGCTAGTATGTAATAATCGAAGGGTCTATAATTGCCAAAACAATTTCTTTTGGTATCAGTGGCAAACATGTATTTTGGTTGGTAACCAAATGTTTTGGGTTTGACACTGTAGCGGCTTTAATGAAGTTGGTTGGTAAAGAGGAACTGGGTACTACTACTGGACTATAAGTTGATTTCAAGATTATCAAAAGCTGTTATTTTCTATGTTCTATTTTGTAAACCTCCCTTTTGGATACGAGTTTAATACAGCTTATTTATTTGATCATAGAGGTCGTTTGAACATCTTATGTGAGAATATTTATTCGTGAGAAAGACCAGTATTTGTAAATAGCATGTGGAGTTTCCTGACAAATCTATGACGGAACTTGTAAATATAAAAGAAAAAACAATATATATATTTCCAATTATTACTTACTCTAAGAGTCTTGTTACACATGGCTGAACCTCTCCCTCCCTCCCTCCCTCCGAATTGTGAATCTAGGTTATGGTTTAATGTCATTAAATAATTTAGGGTTATAGTGGGTTAATCTTGATTTCATAAAAAATGCCATTGAACAATTTAGATTAGTGGGTTAGTTAATCTTAAAAAAAAGTTTAATCCTTCATACACAAGGCCTATCTATACATGCTATACATGAGTGTAGCATGTATCAGTAAGGCCTGCGAACAATTTTATCCTTGAGGATATCTAAATGATTGAGCTTGATGATTGAAGCATTTTTTATATTTATACTATAGAAAGGATTGCATTTTTCTTCAGTCGTCTAAAAGATATAATTTGTGATTTTTATCTTGAAGGTGGGCCCCGGCGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCCGAGTGTGCAAAGTATGGGACAGTAACAAGAGTTCTGATATTTGAGATCACAGAACCCAATTTTCCAGTGGAAGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACTAAGGCTTTGGTTGATCTTGGAGGTCGTTACTTCGGGGGAAGAGTGGTTCAAGCTACATTTTATGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAATCCCTGGATTTACATGAATTCCGATTGGATTGGATAGGATTGTGCTATAACTTTCCTGTTGTAAGCACGTGATGTTGTGGACTCAATAGTTTCTTTGCAGTCATTATGAGAATCTCTCTTTTTACTTGTGACAGACTGAATGATGGCGCACTTGGTAAGCCACATTAACCATCCAATATAAACCCCTTCGATGAATTCATTGGTCTGTCATAGAACTTTTTTCTTCTATGCATGCATCTGTCTCTTAATAGAAGCTTGCCAATTTTATCTTATTTGCTTTCTTCCAGATTCAATTATGTCTTGACTGAACAGTTTCAACTAAGATTGTAATTTGATTTCATTAGTAAAATTGAGAGACTAACAGCGACCCTACTTGCTGCATGTACAGCACACACACCGGTGACTCTGGGCGTTCTTTCGGGCTGCAAGCGGATTATCATTGGGCTTTTACGGTAATTTTAGGTCGAGACTTGTGTTTTTTAATTATTAAAAAATGAAAAACCAGAACTTATCTTGTGCTTAAACTTTCAAGCTTTCTTAATGTGTTGGATTATGGGTGAAATTCTTGCTTGGTTCTTATGTTGATTGAGAAATATTTTTACAGTATAAATTTATATATTGCTGGTTTGTTGGGGTAAATTTTGAATAGAAGTGAGATAATTTCTGACATCTTAACTCCTTGCTTTATTAATTCAATCCTTTTTAAACTGGAAATCAAACAGCCTGTTTTACTGAACTGAGAAGAAGATGAAGAAACAAACACAGTAATTATTACATCTGTTA

mRNA sequence

ATGCTGGGTGGATTGTACGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCCGCCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCACCGACTCTACGCAAGCCATCGTCCGTTTTCGCGCCACAGACTGTTCTCAGATCTCAAAGCAAAATCAAAGCTGCCAACTTGGCGCACTCGAAGGCTTCAGTGTCCGAGCCGGTGGAGCAGTCTCTGCCGATTCTGGCTGAGGCTATTACGCAACCGGCGTTGGTGGCCGTGACGTCTTCGGTTGTAGAAGAGTATGATCCAGCGAGGCCGAATGACTACGAGGAGTATCGGGCGGAGAAGAACAGGAAGGCCAAGGAGGCCGAGATGAGAAAGGAGCTCGAGAGACGTAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGATAGAGAGTATTCCGATTCTAGGATAAATATTTCAGGCGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCACCATCGCCACCAAGTAGCGGAGACGGATTTACCATTGGAAAGTCGGAAACTGGCGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACAGCGGCACAAAGAATGATGGCTAAGATGGGGTGGAAGGAGGGGCAAGGGCTCGGGAAGCAAGAACAAGGTATCACCACCCCTCTGATGGCAAAAAAGACAGACCTGCGTGCTGGAGTAATCGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGACAACCTACTCGGGTTCTCCTGCTCAGAAACATGGTGGGCCCCGGCGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCCGAGTGTGCAAAGTATGGGACAGTAACAAGAGTTCTGATATTTGAGATCACAGAACCCAATTTTCCAGTGGAAGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACTAAGGCTTTGGTTGATCTTGGAGGTCGTTACTTCGGGGGAAGAGTGGTTCAAGCTACATTTTATGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAATCCCTGGATTTACATGAATTCCGATTGGATTGGATAGGATTGTGCTATAACTTTCCTGTTGTAAGCACGTGATGTTGTGGACTCAATAGTTTCTTTGCAGTCATTATGAGAATCTCTCTTTTTACTTGTGACAGACTGAATGATGGCGCACTTGGTAAGCCACATTAACCATCCAATATAAACCCCTTCGATGAATTCATTGGTCTGTCATAGAACTTTTTTCTTCTATGCATGCATCTGTCTCTTAATAGAAGCTTGCCAATTTTATCTTATTTGCTTTCTTCCAGATTCAATTATGTCTTGACTGAACAGTTTCAACTAAGATTGTAATTTGATTTCATTAGTAAAATTGAGAGACTAACAGCGACCCTACTTGCTGCATGTACAGCACACACACCGGTGACTCTGGGCGTTCTTTCGGGCTGCAAGCGGATTATCATTGGGCTTTTACGGTAATTTTAGGTCGAGACTTGTGTTTTTTAATTATTAAAAAATGAAAAACCAGAACTTATCTTGTGCTTAAACTTTCAAGCTTTCTTAATGTGTTGGATTATGGGTGAAATTCTTGCTTGGTTCTTATGTTGATTGAGAAATATTTTTACAGTATAAATTTATATATTGCTGGTTTGTTGGGGTAAATTTTGAATAGAAGTGAGATAATTTCTGACATCTTAACTCCTTGCTTTATTAATTCAATCCTTTTTAAACTGGAAATCAAACAGCCTGTTTTACTGAACTGAGAAGAAGATGAAGAAACAAACACAGTAATTATTACATCTGTTA

Coding sequence (CDS)

ATGCTGGGTGGATTGTACGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCCGCCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCACCGACTCTACGCAAGCCATCGTCCGTTTTCGCGCCACAGACTGTTCTCAGATCTCAAAGCAAAATCAAAGCTGCCAACTTGGCGCACTCGAAGGCTTCAGTGTCCGAGCCGGTGGAGCAGTCTCTGCCGATTCTGGCTGAGGCTATTACGCAACCGGCGTTGGTGGCCGTGACGTCTTCGGTTGTAGAAGAGTATGATCCAGCGAGGCCGAATGACTACGAGGAGTATCGGGCGGAGAAGAACAGGAAGGCCAAGGAGGCCGAGATGAGAAAGGAGCTCGAGAGACGTAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGATAGAGAGTATTCCGATTCTAGGATAAATATTTCAGGCGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCACCATCGCCACCAAGTAGCGGAGACGGATTTACCATTGGAAAGTCGGAAACTGGCGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACAGCGGCACAAAGAATGATGGCTAAGATGGGGTGGAAGGAGGGGCAAGGGCTCGGGAAGCAAGAACAAGGTATCACCACCCCTCTGATGGCAAAAAAGACAGACCTGCGTGCTGGAGTAATCGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGACAACCTACTCGGGTTCTCCTGCTCAGAAACATGGTGGGCCCCGGCGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCCGAGTGTGCAAAGTATGGGACAGTAACAAGAGTTCTGATATTTGAGATCACAGAACCCAATTTTCCAGTGGAAGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACTAAGGCTTTGGTTGATCTTGGAGGTCGTTACTTCGGGGGAAGAGTGGTTCAAGCTACATTTTATGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAATCCCTGGATTTACATGA

Protein sequence

MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAANLAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKEAEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPSSGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNELAPMPGEIPGFT

Homology

[Close]

BLAST of Carg19310 vs. NCBI nr
Match: XP_022925977.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita moschata] >XP_022925978.1 DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita moschata] >KAG7034760.1 DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 697.2 bits (1798), Expect = 7.7e-197
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
           LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE
Sbjct: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGEIPGFT
Sbjct: 361 LAPMPGEIPGFT 372

[Close]

BLAST of Carg19310 vs. NCBI nr
Match: XP_022978020.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 696.0 bits (1795), Expect = 1.7e-196
Identity = 371/372 (99.73%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
           LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE
Sbjct: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPP+
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPN 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGEIPGFT
Sbjct: 361 LAPMPGEIPGFT 372

[Close]

BLAST of Carg19310 vs. NCBI nr
Match: XP_023543834.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 693.0 bits (1787), Expect = 1.4e-195
Identity = 369/372 (99.19%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQS++KAAN
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSRMKAAN 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
           LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE
Sbjct: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERDREYS+SRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERDREYSNSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGEIPGFT
Sbjct: 361 LAPMPGEIPGFT 372

[Close]

BLAST of Carg19310 vs. NCBI nr
Match: KAG6581470.1 (DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 662.9 bits (1709), Expect = 1.6e-186
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
           LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE
Sbjct: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERF 357
           VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERF
Sbjct: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERF 356

[Close]

BLAST of Carg19310 vs. NCBI nr
Match: XP_022146691.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia])

HSP 1 Score: 657.9 bits (1696), Expect = 5.2e-185
Identity = 349/372 (93.82%), Postives = 359/372 (96.51%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAA 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
             H KAS S  VEQS PILAEAITQPALVAVTS+VVEEYDPARPNDYEEYR EK RKA E
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREER+R+YSDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPV+EAVRIFVQFERSEETTKALVDL GRYFGGRVV+ATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGE+PGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Carg19310 vs. ExPASy Swiss-Prot
Match: P42698 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT111 PE=1 SV=2)

HSP 1 Score: 490.7 bits (1262), Expect = 1.4e-137
Identity = 277/392 (70.66%), Postives = 313/392 (79.85%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPP+  E+    +S+VWSSSTKMAPPTLRKP +   PQT+LR  +K K   
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIV 60

Query: 61  LA--------HSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRA 120
            A        +S  SV  P  +S P       QPALV VTSSV+EEYDPARPNDYEEY+ 
Sbjct: 61  SAPYKPPPPSNSSQSVLIPANESAP-----SHQPALVGVTSSVIEEYDPARPNDYEEYKR 120

Query: 121 EKNRKAKEAEMRKELERRRQEEEEREKKEREERDRE-----YSDSRINISGEEAWRRRAA 180
           EK RKA EAEM++E+++RRQE+EER+K+EREER++E        SR+NISGEEAW+RRAA
Sbjct: 121 EKKRKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAA 180

Query: 181 K----SGAIPRSPSPPSSGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGK 240
                SG   RS SPP + DGF+IGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGK
Sbjct: 181 MSGGGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLGK 240

Query: 241 QEQGITTPLMAKKTDLRAGVIVNANDTKS----EKKVKSVNFNGQPTRVLLLRNMVGPGE 300
            EQGITTPLMAKKTD RAGVIVNA++ KS    +K VKSVN NG+PTRVLLLRNMVGPG+
Sbjct: 241 SEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPGQ 300

Query: 301 VDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGR 360
           VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDL GR
Sbjct: 301 VDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGR 360

Query: 361 YFGGRVVQATFYDEERFSKNELAPMPGEIPGF 372
           YFGGR V+ATFYDEE+FSKNELAP+PGEIPG+
Sbjct: 361 YFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of Carg19310 vs. ExPASy Swiss-Prot
Match: Q96I25 (Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.8e-35
Identity = 143/408 (35.05%), Postives = 206/408 (50.49%), Query Frame = 0


Query: 5   LYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLR-KPSSVFAPQTVLRSQSKIKA--ANL 64
           LY DL       E   + +  WS + K+    L+ K +++   ++    QS + A   +L
Sbjct: 3   LYDDL-----GVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDL 62

Query: 65  AHSKASVSEPVEQSLPILAEAITQPALVAVTSSVV-----EEYDPARPNDYEEYRAEKNR 124
               +S    +  + P +A  +  P     ++  V     +EYDP  PNDYE+      R
Sbjct: 63  KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV---VKR 122

Query: 125 KAKEAEMRKELERRRQ-EEEEREKKEREERD----REYSDSRINISGEEAWRRRAAKSGA 184
           + +E + ++ELER+++ EE E+ +K+R E      R   DS  +   E   R+R+    A
Sbjct: 123 QREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAA 182

Query: 185 I------------------------PRSPS-----PPSSGDGFTIGKSETG---GLGVGA 244
           I                        PRS S     PP   +     +S TG         
Sbjct: 183 IAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANM 242

Query: 245 GGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDTKSEKKVKS- 304
           GG  T A ++M K G++EGQGLGK EQG++T L  +KT  R G I+  + T+ +   KS 
Sbjct: 243 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSD 302

Query: 305 ----VNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVE 363
                     PT+V+LLRNMVG GEVD++LE E   EC KYG V + +IFEI  P  P +
Sbjct: 303 SNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAPDD 362

[Close]

BLAST of Carg19310 vs. ExPASy Swiss-Prot
Match: Q8JZX4 (Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.6e-34
Identity = 144/412 (34.95%), Postives = 207/412 (50.24%), Query Frame = 0


Query: 5   LYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLR-KPSSVFAPQTVLRSQSKIKA--ANL 64
           LY DL       E   + +  WS + K+    L+ K +++   ++    QS + A   +L
Sbjct: 3   LYDDL-----GVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDL 62

Query: 65  AHSKASVSEPVEQSLPILAEAITQPALVAVTSSVV-----EEYDPARPNDYEEYRAEKNR 124
               +S    +  + P +A  +  P     ++  V     +EYDP  PNDYE+      R
Sbjct: 63  KRGGSSDDRQIADTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV---VKR 122

Query: 125 KAKEAEMRKELERRRQ-EEEEREKKEREERD----REYSDSRINISGEEAWRRRAAKSGA 184
           + +E + ++ELER+++ EE E+ +K+R E      R   DS  +   E   R+R+    A
Sbjct: 123 QREERQRQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAA 182

Query: 185 I------------------------PRSPS-----PPSSGDGFTIGKSETG---GLGVGA 244
           I                        PRS S     PP   +     +S TG         
Sbjct: 183 IAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANM 242

Query: 245 GGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDT-KSEKKVKS 304
           GG  T A ++M K G++EGQGLGK EQG++T L  +KT  R G I+  + T K E +  S
Sbjct: 243 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDAS 302

Query: 305 VNFNGQ--------PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPN 363
              +          PT+V+LLRNMVG GEVD++LE E   EC KYG V + +IFEI  P 
Sbjct: 303 KKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PG 362

[Close]

BLAST of Carg19310 vs. ExPASy Swiss-Prot
Match: Q2HJG2 (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-18
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 264 QPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVEEAVRIFVQ 323
           Q + V++LRNMV P ++DD+LE EV  EC K+G V RV+I++  +      E  V+IFV+
Sbjct: 430 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 489

Query: 324 FERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNELA 363
           F  + ET KA+ DL GR+F GR V A  YD+ERF  ++L+
Sbjct: 490 FSVASETHKAIQDLNGRWFAGRKVVAEVYDQERFDNSDLS 529

[Close]

BLAST of Carg19310 vs. ExPASy Swiss-Prot
Match: Q3UEB3 (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-18
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 264 QPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVEEAVRIFVQ 323
           Q + V++LRNMV P ++DD+LE EV  EC K+G V RV+I++  +      E  V+IFV+
Sbjct: 464 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 523

Query: 324 FERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNELA 363
           F  + ET KA+  L GR+FGGR V A  YD+ERF  ++L+
Sbjct: 524 FSMASETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563

[Close]

BLAST of Carg19310 vs. ExPASy TrEMBL
Match: A0A6J1ED37 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433232 PE=4 SV=1)

HSP 1 Score: 697.2 bits (1798), Expect = 3.7e-197
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
           LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE
Sbjct: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGEIPGFT
Sbjct: 361 LAPMPGEIPGFT 372

[Close]

BLAST of Carg19310 vs. ExPASy TrEMBL
Match: A0A6J1INW6 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478133 PE=4 SV=1)

HSP 1 Score: 696.0 bits (1795), Expect = 8.3e-197
Identity = 371/372 (99.73%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
           LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE
Sbjct: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPP+
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPN 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGEIPGFT
Sbjct: 361 LAPMPGEIPGFT 372

[Close]

BLAST of Carg19310 vs. ExPASy TrEMBL
Match: A0A6J1D044 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015835 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 2.5e-185
Identity = 349/372 (93.82%), Postives = 359/372 (96.51%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAA 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
             H KAS S  VEQS PILAEAITQPALVAVTS+VVEEYDPARPNDYEEYR EK RKA E
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREER+R+YSDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPV+EAVRIFVQFERSEETTKALVDL GRYFGGRVV+ATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGE+PGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Carg19310 vs. ExPASy TrEMBL
Match: A0A0A0KP45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1)

HSP 1 Score: 651.7 bits (1680), Expect = 1.8e-183
Identity = 349/372 (93.82%), Postives = 356/372 (95.70%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKP NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAA 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
             H K SVS  VE S PILAEAITQPALVAVTS+VVEEYDPARPNDYEEYR EK RKA E
Sbjct: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREER+RE+SDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGF+IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNG PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPV+EAVRIFVQFERSEETTKALVDL GRYFGGRVV+ATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGE+PGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Carg19310 vs. ExPASy TrEMBL
Match: A0A1S3AYL8 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484318 PE=4 SV=1)

HSP 1 Score: 651.4 bits (1679), Expect = 2.3e-183
Identity = 347/372 (93.28%), Postives = 357/372 (95.97%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPPSSAEEDKP NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ+KIKAA 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQNKIKAAT 60

Query: 61  LAHSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRAEKNRKAKE 120
           L H KASVS  VE S PILAEAITQPALVAVTS+V+EEYDPARPNDYEEYR EK RKA E
Sbjct: 61  LTHPKASVSTQVEASQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREERDREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKER+ER+RE+SDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKERDEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGF+IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVNFNG PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKAKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 360
           VLIFEITEPNFPV+EAVRIFVQFERSEETTKALVDL GRYFGGRVV+ATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEIPGFT 373
           LAPMPGE+PGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Carg19310 vs. TAIR 10
Match: AT1G30480.1 (D111/G-patch domain-containing protein )

HSP 1 Score: 490.7 bits (1262), Expect = 1.0e-138
Identity = 277/392 (70.66%), Postives = 313/392 (79.85%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPANSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAN 60
           MLGGLYGDLPPP+  E+    +S+VWSSSTKMAPPTLRKP +   PQT+LR  +K K   
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIV 60

Query: 61  LA--------HSKASVSEPVEQSLPILAEAITQPALVAVTSSVVEEYDPARPNDYEEYRA 120
            A        +S  SV  P  +S P       QPALV VTSSV+EEYDPARPNDYEEY+ 
Sbjct: 61  SAPYKPPPPSNSSQSVLIPANESAP-----SHQPALVGVTSSVIEEYDPARPNDYEEYKR 120

Query: 121 EKNRKAKEAEMRKELERRRQEEEEREKKEREERDRE-----YSDSRINISGEEAWRRRAA 180
           EK RKA EAEM++E+++RRQE+EER+K+EREER++E        SR+NISGEEAW+RRAA
Sbjct: 121 EKKRKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAA 180

Query: 181 K----SGAIPRSPSPPSSGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGK 240
                SG   RS SPP + DGF+IGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGK
Sbjct: 181 MSGGGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLGK 240

Query: 241 QEQGITTPLMAKKTDLRAGVIVNANDTKS----EKKVKSVNFNGQPTRVLLLRNMVGPGE 300
            EQGITTPLMAKKTD RAGVIVNA++ KS    +K VKSVN NG+PTRVLLLRNMVGPG+
Sbjct: 241 SEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPGQ 300

Query: 301 VDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVEEAVRIFVQFERSEETTKALVDLGGR 360
           VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDL GR
Sbjct: 301 VDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGR 360

Query: 361 YFGGRVVQATFYDEERFSKNELAPMPGEIPGF 372
           YFGGR V+ATFYDEE+FSKNELAP+PGEIPG+
Sbjct: 361 YFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of Carg19310 vs. TAIR 10
Match: AT4G36690.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-07
Identity = 29/100 (29.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 266 TRVLLLRNMVGPGEVDDELE-----EEVGSECAKYGTVTRVLIFEITEPNFPVEEAVRIF 325
           T V+ L  +V   E+ D+ E     E++  E  K+G +T V+I   +    PV    ++F
Sbjct: 471 TTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVF 530

Query: 326 VQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 361
           +++  ++ +T+A   + GR FGG  V A +Y E++F + +
Sbjct: 531 LKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGD 570

[Close]

BLAST of Carg19310 vs. TAIR 10
Match: AT4G36690.4 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-07
Identity = 29/100 (29.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 266 TRVLLLRNMVGPGEVDDELE-----EEVGSECAKYGTVTRVLIFEITEPNFPVEEAVRIF 325
           T V+ L  +V   E+ D+ E     E++  E  K+G +T V+I   +    PV    ++F
Sbjct: 449 TTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVF 508

Query: 326 VQFERSEETTKALVDLGGRYFGGRVVQATFYDEERFSKNE 361
           +++  ++ +T+A   + GR FGG  V A +Y E++F + +
Sbjct: 509 LKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGD 548

The following BLAST results are available for this feature:

BLAST of Carg19310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925977.1	7.7e-197	100.00	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita mosch...	[more]
XP_022978020.1	1.7e-196	99.73	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxim...	[more]
XP_023543834.1	1.4e-195	99.19	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita pepo ...	[more]
KAG6581470.1	1.6e-186	100.00	DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_022146691.1	5.2e-185	93.82	DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia]	[more]

BLAST of Carg19310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42698	1.4e-137	70.66	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thalia...	[more]
Q96I25	7.8e-35	35.05	Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1	[more]
Q8JZX4	8.6e-34	34.95	Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1	[more]
Q2HJG2	1.7e-18	47.00	Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1	[more]
Q3UEB3	1.7e-18	47.00	Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=...	[more]

BLAST of Carg19310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED37	3.7e-197	100.00	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita mos...	[more]
A0A6J1INW6	8.3e-197	99.73	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita max...	[more]
A0A6J1D044	2.5e-185	93.82	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charanti...	[more]
A0A0A0KP45	1.8e-183	93.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1	[more]
A0A1S3AYL8	2.3e-183	93.28	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=36...	[more]

BLAST of Carg19310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30480.1	1.0e-138	70.66	D111/G-patch domain-containing protein	[more]
AT4G36690.1	7.1e-07	29.00	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.4	7.1e-07	29.00	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..200
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 268..349 e-value: 4.4E-26 score: 102.6
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 200..246 e-value: 1.4E-15 score: 67.8
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 205..244 e-value: 5.3E-17 score: 61.4
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 202..248 score: 15.451051
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 262..361 e-value: 7.0E-26 score: 92.2
IPR040052	Splicing factor 45	PIRSF	PIRSF031066	SPF45	coord: 143..368 e-value: 2.1E-97 score: 324.9 coord: 3..153 e-value: 3.4E-25 score: 87.1
IPR040052	Splicing factor 45	PANTHER	PTHR13288	SPLICING FACTOR 45 SPF45	coord: 1..363
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 267..353 score: 9.336864
IPR034653	SPF45, RNA recognition motif	CDD	cd12647	RRM_UHM_SPF45	coord: 265..361 e-value: 5.4826E-49 score: 158.59
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 270..355

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19310-RA	Carg19310-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0043484	regulation of RNA splicing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding