Carg19258 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19258
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein L22p/L17e family protein isoform 1
Location	Carg_Chr03: 9655535 .. 9656227 (+)
RNA-Seq Expression	Carg19258
Synteny	Carg19258

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTGTCAGCTGCGGTGGGACGCACAAATTAGCCAGGTTCCTGGTAGGAGGGATCCTTACGATGATTTGCTTACGGACATCAACAATAACTCTAAGTGATAAGTGAAGGTTCTGTTTCTGTGCATTTTTCCTATCCGATTTGATTGAATTAGAGAACTGATTGAAACTTGAAAACTTCTGGGCTTTTGGAGAGATATACCAATAGATAGATCCCTCTGATGTTGTTGTTCTTGAAATACTTTGCAGGATGTTTGGTAGAGCTCTGAAATCTGTGGTGGTATCTGGGAAGCTCCCAAGCAATTGTTTGAACGTTTATTTTGTTGTTGTTTAAACTCGAGAAGTACCTTGTGGTTTGTATTGTCAAACGGAGATTTTGGTGCTGGAATAAACGTGCTTTTTAGCTCATAAGATATATTTCAAGCTGGTGAATTTGAGTACATTGTTTTTCTAGTGCCCTGATCGGATGCATTTTTCATTATCTATATCCAAATTTGTTGCAAACTATCATAGCTCCGC

mRNA sequence

ATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTGTCAGCTGCGGATGTTTGGTAGAGCTCTGAAATCTGTGGTGGTATCTGGGAAGCTCCCAAGCAATTGTTTGAACGTTTATTTTGTTGTTGTTTAAACTCGAGAAGTACCTTGTGGTTTGTATTGTCAAACGGAGATTTTGGTGCTGGAATAAACGTGCTTTTTAGCTCATAAGATATATTTCAAGCTGGTGAATTTGAGTACATTGTTTTTCTAGTGCCCTGATCGGATGCATTTTTCATTATCTATATCCAAATTTGTTGCAAACTATCATAGCTCCGC

Coding sequence (CDS)

ATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTGTCAGCTGCGGATGTTTGGTAGAGCTCTGAAATCTGTGGTGGTATCTGGGAAGCTCCCAAGCAATTGTTTGAACGTTTATTTTGTTGTTGTTTAA

Protein sequence

MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHNCQLRMFGRALKSVVVSGKLPSNCLNVYFVVV

Homology

[Close]

BLAST of Carg19258 vs. NCBI nr
Match: KAG7034709.1 (hypothetical protein SDJN02_04439, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 8.8e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 CQLRMFGRALKSVVVSGKLPSNCLNVYFVVV 92
          CQLRMFGRALKSVVVSGKLPSNCLNVYFVVV
Sbjct: 61 CQLRMFGRALKSVVVSGKLPSNCLNVYFVVV 91

[Close]

BLAST of Carg19258 vs. NCBI nr
Match: XP_022956462.1 (uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956464.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022998787.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998795.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998804.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998812.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_023526352.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526360.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526369.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 4.0e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 CQLR 65
          CQLR
Sbjct: 61 CQLR 64

[Close]

BLAST of Carg19258 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 6.3e-28
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKF+MEFAENLVLRLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 CQLR 65
           QL+
Sbjct: 61 SQLK 64

[Close]

BLAST of Carg19258 vs. NCBI nr
Match: XP_022151828.1 (uncharacterized protein LOC111019716 [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 CQLR 65
           QL+
Sbjct: 61 SQLQ 64

[Close]

BLAST of Carg19258 vs. NCBI nr
Match: KAG6601597.1 (hypothetical protein SDJN03_06830, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 38 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 97

[Close]

BLAST of Carg19258 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 CQLR 65
          CQLR
Sbjct: 61 CQLR 64

[Close]

BLAST of Carg19258 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 CQLR 65
          CQLR
Sbjct: 61 CQLR 64

[Close]

BLAST of Carg19258 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.9e-28
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 CQLR 65
           QL+
Sbjct: 61 SQLQ 64

[Close]

BLAST of Carg19258 vs. ExPASy TrEMBL
Match: A0A5N6R2K3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009369 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          M FIMEFAENLVLRLMEDPKERDRKFREH+YAVKDRC KTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCNKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 CQLR 65
           QLR
Sbjct: 61 SQLR 64

[Close]

BLAST of Carg19258 vs. ExPASy TrEMBL
Match: A0A2N9HET1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38327 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          M FIMEFAENLVL+LMEDPKERDRKFREHVYAVKDRC KTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLKLMEDPKERDRKFREHVYAVKDRCNKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 CQLR 65
           QLR
Sbjct: 61 SQLR 64

[Close]

BLAST of Carg19258 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          M FIMEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ PIRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 CQLR 65
           QLR
Sbjct: 61 AQLR 64

[Close]

BLAST of Carg19258 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          M FIMEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ PIRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 CQLR 65
           QLR
Sbjct: 61 AQLR 64

The following BLAST results are available for this feature:

BLAST of Carg19258 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034709.1	8.8e-46	100.00	hypothetical protein SDJN02_04439, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022956462.1	4.0e-30	100.00	uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 unchar...	[more]
XP_038891434.1	6.3e-28	92.19	uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara...	[more]
XP_022151828.1	1.8e-27	90.63	uncharacterized protein LOC111019716 [Momordica charantia]	[more]
KAG6601597.1	2.4e-27	100.00	hypothetical protein SDJN03_06830, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg19258 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19258 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K907	1.9e-30	100.00	uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347...	[more]
A0A6J1GWE2	1.9e-30	100.00	uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A6J1DD92	8.9e-28	90.63	uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5N6R2K3	2.6e-27	92.19	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009369 PE=4 SV=1	[more]
A0A2N9HET1	2.6e-27	92.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38327 PE=4 SV=1	[more]

BLAST of Carg19258 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67350.1	1.1e-25	78.13	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]
AT1G67350.2	1.1e-25	78.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PFAM	PF17250	NDUFB11	coord: 1..65 e-value: 1.1E-37 score: 128.5
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PANTHER	PTHR37709	EXPRESSED PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19258-RA	Carg19258-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding