Carg19177 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19177
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 8227306 .. 8227560 (+)
RNA-Seq ExpressionCarg19177
SyntenyCarg19177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAACGCCGGCGCTGACGGTGTTGATCCCCCGCTGGAAGATTCCTCCGCCGGAGCTCAACAGCAAGAACAGAGTGGTTGGACTGATTACTTGGTGGATTATTCCTCGCCGGAAAATGCTGTATGTTCGAGCACTGGGAGCTGTTCTTGGGATCCCAATTCTGTTGGGAAAGCGGTTTTTGAGGATGATGATGATGCCTTAGAAGACACGGCTACTTCTCCTATTCACAGTACAAAAGTCAGCACATAA

mRNA sequence

ATGGAGAAGAACGCCGGCGCTGACGGTGTTGATCCCCCGCTGGAAGATTCCTCCGCCGGAGCTCAACAGCAAGAACAGAGTGGTTGGACTGATTACTTGGTGGATTATTCCTCGCCGGAAAATGCTGTATGTTCGAGCACTGGGAGCTGTTCTTGGGATCCCAATTCTGTTGGGAAAGCGGTTTTTGAGGATGATGATGATGCCTTAGAAGACACGGCTACTTCTCCTATTCACAGTACAAAAGTCAGCACATAA

Coding sequence (CDS)

ATGGAGAAGAACGCCGGCGCTGACGGTGTTGATCCCCCGCTGGAAGATTCCTCCGCCGGAGCTCAACAGCAAGAACAGAGTGGTTGGACTGATTACTTGGTGGATTATTCCTCGCCGGAAAATGCTGTATGTTCGAGCACTGGGAGCTGTTCTTGGGATCCCAATTCTGTTGGGAAAGCGGTTTTTGAGGATGATGATGATGCCTTAGAAGACACGGCTACTTCTCCTATTCACAGTACAAAAGTCAGCACATAA

Protein sequence

MEKNAGADGVDPPLEDSSAGAQQQEQSGWTDYLVDYSSPENAVCSSTGSCSWDPNSVGKAVFEDDDDALEDTATSPIHSTKVST
Homology
BLAST of Carg19177 vs. NCBI nr
Match: KAG7011915.1 (hypothetical protein SDJN02_26823, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.6 bits (431), Expect = 5.6e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MEKNAGADGVDPPLEDSSAGAQQQEQSGWTDYLVDYSSPENAVCSSTGSCSWDPNSVGKA 60
          MEKNAGADGVDPPLEDSSAGAQQQEQSGWTDYLVDYSSPENAVCSSTGSCSWDPNSVGKA
Sbjct: 1  MEKNAGADGVDPPLEDSSAGAQQQEQSGWTDYLVDYSSPENAVCSSTGSCSWDPNSVGKA 60

Query: 61 VFEDDDDALEDTATSPIHSTKVST 85
          VFEDDDDALEDTATSPIHSTKVST
Sbjct: 61 VFEDDDDALEDTATSPIHSTKVST 84

BLAST of Carg19177 vs. NCBI nr
Match: KAG6572302.1 (hypothetical protein SDJN03_29030, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.6 bits (431), Expect = 5.6e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1   MEKNAGADGVDPPLEDSSAGAQQQEQSGWTDYLVDYSSPENAVCSSTGSCSWDPNSVGKA 60
           MEKNAGADGVDPPLEDSSAGAQQQEQSGWTDYLVDYSSPENAVCSSTGSCSWDPNSVGKA
Sbjct: 23  MEKNAGADGVDPPLEDSSAGAQQQEQSGWTDYLVDYSSPENAVCSSTGSCSWDPNSVGKA 82

Query: 61  VFEDDDDALEDTATSPIHSTKVST 85
           VFEDDDDALEDTATSPIHSTKVST
Sbjct: 83  VFEDDDDALEDTATSPIHSTKVST 106

BLAST of Carg19177 vs. NCBI nr
Match: XP_038888852.1 (vascular-related unknown protein 1-like [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11
Identity = 55/121 (45.45%), Postives = 70/121 (57.85%), Query Frame = 0

Query: 1   MEK-NAGADGVDPPLEDSS--------AGAQQQEQSGWTDYLVDYSSPENA-VCSSTGSC 60
           MEK NA A+G D P E+SS        AGA++QE+SGWTDYL DY S E++ +CSS GSC
Sbjct: 1   MEKNNATAEGSDSPPENSSTSSSAAAAAGAEEQEESGWTDYLEDYFSSESSYLCSSIGSC 60

Query: 61  S-WD------------PNSVGKAVFE---------------DDDDALEDTATSPIHSTKV 84
           S WD             N +GK +F+                +DD+L+DTATSPIHS KV
Sbjct: 61  SNWDHNISNPNYDINKTNHIGKMIFDVPNKLTFKKTRTQKIFEDDSLQDTATSPIHSPKV 120

BLAST of Carg19177 vs. NCBI nr
Match: XP_008455422.1 (PREDICTED: uncharacterized protein LOC103495585 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-08
Identity = 47/111 (42.34%), Postives = 59/111 (53.15%), Query Frame = 0

Query: 12  PPLEDSSAGAQQQEQSGWTDYLVDYSSPE------NAVCSSTGSCS-WD-------PN-- 71
           PP   S+AGA++QE+SGWTDYL DY + E      + +CSS GSCS WD       PN  
Sbjct: 19  PPENSSAAGAEEQEESGWTDYLEDYFNSELVERESSFLCSSIGSCSNWDDLNNISYPNYD 78

Query: 72  -----SVGKAVFED-------------------DDDALEDTATSPIHSTKV 83
                +VG   ++D                   DDD+L+DTATSPIHS KV
Sbjct: 79  INYNINVGNVNYDDFPKSNNLTFKKTRTQKIFEDDDSLQDTATSPIHSPKV 129

BLAST of Carg19177 vs. NCBI nr
Match: XP_022930798.1 (vascular-related unknown protein 1-like [Cucurbita moschata] >XP_022930799.1 vascular-related unknown protein 1-like [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 8.8e-08
Identity = 48/120 (40.00%), Postives = 63/120 (52.50%), Query Frame = 0

Query: 2   EKNAGADGVDPPLEDSSA---GAQQQEQSGWTDYLVDYSSPE------NAVCSSTGSCSW 61
           +KNA A GVDPP E SS+   GA++  +SGWT+YL DY   E         CSS+GSCSW
Sbjct: 3   KKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYLWSEIERKSSFLCCSSSGSCSW 62

Query: 62  DPN--------------SVGKAVFED---------------DDDALEDTATSPIHSTKVS 84
           D +              SVG+ + +                DDD+LEDTATSP+ + KV+
Sbjct: 63  DISEANKEKINGLSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPKVA 122

BLAST of Carg19177 vs. ExPASy TrEMBL
Match: A0A1S3C0F7 (uncharacterized protein LOC103495585 OS=Cucumis melo OX=3656 GN=LOC103495585 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 47/111 (42.34%), Postives = 59/111 (53.15%), Query Frame = 0

Query: 12  PPLEDSSAGAQQQEQSGWTDYLVDYSSPE------NAVCSSTGSCS-WD-------PN-- 71
           PP   S+AGA++QE+SGWTDYL DY + E      + +CSS GSCS WD       PN  
Sbjct: 19  PPENSSAAGAEEQEESGWTDYLEDYFNSELVERESSFLCSSIGSCSNWDDLNNISYPNYD 78

Query: 72  -----SVGKAVFED-------------------DDDALEDTATSPIHSTKV 83
                +VG   ++D                   DDD+L+DTATSPIHS KV
Sbjct: 79  INYNINVGNVNYDDFPKSNNLTFKKTRTQKIFEDDDSLQDTATSPIHSPKV 129

BLAST of Carg19177 vs. ExPASy TrEMBL
Match: A0A6J1ESI7 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111437171 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 48/120 (40.00%), Postives = 63/120 (52.50%), Query Frame = 0

Query: 2   EKNAGADGVDPPLEDSSA---GAQQQEQSGWTDYLVDYSSPE------NAVCSSTGSCSW 61
           +KNA A GVDPP E SS+   GA++  +SGWT+YL DY   E         CSS+GSCSW
Sbjct: 3   KKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYLWSEIERKSSFLCCSSSGSCSW 62

Query: 62  DPN--------------SVGKAVFED---------------DDDALEDTATSPIHSTKVS 84
           D +              SVG+ + +                DDD+LEDTATSP+ + KV+
Sbjct: 63  DISEANKEKINGLSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPKVA 122

BLAST of Carg19177 vs. ExPASy TrEMBL
Match: A0A6J1JN61 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111486202 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.7e-07
Identity = 48/120 (40.00%), Postives = 63/120 (52.50%), Query Frame = 0

Query: 2   EKNAGADGVDPPLEDSSA---GAQQQEQSGWTDYLVDYSSPE------NAVCSSTGSCSW 61
           +KNA   GVDPP E SS+   GA++ E+SGWT+YL DY   E         CSS+GSCSW
Sbjct: 3   KKNA---GVDPPPEKSSSAATGAEEAEESGWTEYLEDYLWSEIERKSSFLCCSSSGSCSW 62

Query: 62  DPN--------------SVGKAVFED---------------DDDALEDTATSPIHSTKVS 84
           D +              SVG+ + +                DDD+LEDTATSP+ + KV+
Sbjct: 63  DISEANKEKINALTPFCSVGEVILDAPNKLSLKKTTTQTIFDDDSLEDTATSPVLTPKVA 119

BLAST of Carg19177 vs. ExPASy TrEMBL
Match: A0A6J1C2S1 (uncharacterized protein LOC111007924 OS=Momordica charantia OX=3673 GN=LOC111007924 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.0e-07
Identity = 49/124 (39.52%), Postives = 61/124 (49.19%), Query Frame = 0

Query: 1   MEKNAGADGVDPPLEDSSA-------GAQQQEQSGWTDYLVDYSS------PENAVCSST 60
           MEKN  A    PPLE+ SA       G  ++E+SGWTDYL DY S       ++ +CSS 
Sbjct: 1   MEKNKDA----PPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSI 60

Query: 61  GSCSWDPN-----------SVGKAVFED-----------------DDDALEDTATSPIHS 84
           GSCS D N           SVG+   +                   DD+LEDTATSP+HS
Sbjct: 61  GSCSDDGNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKIFQDDSLEDTATSPVHS 120

BLAST of Carg19177 vs. ExPASy TrEMBL
Match: A0A0A0K3L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044250 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-05
Identity = 40/110 (36.36%), Postives = 53/110 (48.18%), Query Frame = 0

Query: 13  PLEDSSAGAQQQEQSGWTDYLVDYSSPE------NAVCSSTGSCS-WDPN---------- 72
           P   S+   ++QE+SGWTDYL DY + E      + +CSS GSCS WD            
Sbjct: 16  PENSSAVRDEEQEESGWTDYLEDYFNSEFVERESSFLCSSIGSCSNWDDRNNISYPSYDI 75

Query: 73  ----SVGKAVFED-------------------DDDALEDTATSPIHSTKV 83
               ++G   ++D                   DDD+L+DTATSPIHS KV
Sbjct: 76  NYNINIGNVNYDDFPKSNNLTFKKTRTQKIFEDDDSLQDTATSPIHSPKV 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7011915.15.6e-39100.00hypothetical protein SDJN02_26823, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6572302.15.6e-39100.00hypothetical protein SDJN03_29030, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038888852.18.5e-1145.45vascular-related unknown protein 1-like [Benincasa hispida][more]
XP_008455422.15.2e-0842.34PREDICTED: uncharacterized protein LOC103495585 [Cucumis melo][more]
XP_022930798.18.8e-0840.00vascular-related unknown protein 1-like [Cucurbita moschata] >XP_022930799.1 vas... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C0F72.5e-0842.34uncharacterized protein LOC103495585 OS=Cucumis melo OX=3656 GN=LOC103495585 PE=... [more]
A0A6J1ESI74.3e-0840.00Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111437171 PE=4 SV=1[more]
A0A6J1JN614.7e-0740.00Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111486202 PE=4 SV=1[more]
A0A6J1C2S18.0e-0739.52uncharacterized protein LOC111007924 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A0A0K3L15.7e-0536.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044250 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19177-RACarg19177-RAmRNA