Carg19134 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19134
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Carg_Chr11: 12532721 .. 12533257 (+)
RNA-Seq Expression	Carg19134
Synteny	Carg19134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGTTGGATCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

mRNA sequence

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGTTGGATCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

Coding sequence (CDS)

ATGTCTTTCGAAGGAGCAACCAAAGATTTCTCTGAAGGATCTTCATCAACCTCTTCCCCTCAGCCTGTTGGATCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATACTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTCGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACTAACCCCTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGAGAGTGTCAAGCTAAAGCAAGAGGAATTCCTTACAAGAAGAAGAAGAAGACTACCACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

Protein sequence

MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP

Homology

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BLAST of Carg19134 vs. NCBI nr
Match: KAG7022931.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.4 bits (960), Expect = 5.5e-100
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of Carg19134 vs. NCBI nr
Match: KAG6589232.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369.8 bits (948), Expect = 1.3e-98
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Carg19134 vs. NCBI nr
Match: XP_022930813.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 367.1 bits (941), Expect = 8.7e-98
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQP GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Carg19134 vs. NCBI nr
Match: XP_022988968.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 366.7 bits (940), Expect = 1.1e-97
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQP G IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of Carg19134 vs. NCBI nr
Match: XP_023530720.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.5 bits (937), Expect = 2.5e-97
Identity = 176/179 (98.32%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG TKDFSEGSSSTSSPQP GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGTKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

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BLAST of Carg19134 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.1e-74
Identity = 134/158 (84.81%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 16  STSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKT 75
           S+ S  PV   PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKT
Sbjct: 14  SSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKT 73

Query: 76  KVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRV 135
           KVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRV
Sbjct: 74  KVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRV 133

Query: 136 YLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           YLR+VRECQAKARGIPY KKKKK  T     G EDS+S
Sbjct: 134 YLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Carg19134 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-61
Identity = 112/156 (71.79%), Postives = 128/156 (82.05%), Query Frame = 0


Query: 18  SSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKV 77
           ++PQP   + SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+EFLRYLDQFGKTKV
Sbjct: 21  AAPQPPAQL-SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 80

Query: 78  HVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYL 137
           H  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEESGG+PE+NPFA+ A+R+YL
Sbjct: 81  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 140

Query: 138 RDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           R+VR+ QAKARGIPY KKK+K +   Q  G E S S
Sbjct: 141 REVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGS 175

[Close]

BLAST of Carg19134 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-61
Identity = 112/156 (71.79%), Postives = 128/156 (82.05%), Query Frame = 0


Query: 18  SSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKV 77
           ++PQP   + SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+EFLRYLDQFGKTKV
Sbjct: 21  AAPQPPAQL-SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 80

Query: 78  HVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYL 137
           H  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEESGG+PE+NPFA+ A+R+YL
Sbjct: 81  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 140

Query: 138 RDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           R+VR+ QAKARGIPY KKK+K +   Q  G E S S
Sbjct: 141 REVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGS 175

[Close]

BLAST of Carg19134 vs. ExPASy Swiss-Prot
Match: Q6ATW6 (Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.4e-60
Identity = 109/160 (68.12%), Postives = 124/160 (77.50%), Query Frame = 0


Query: 13  GSSSTSSPQPVGSIP---------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 72
           G  +    QPV   P         SRYESQKRRDWNTF QYLKN RPP+ L+ CS  HV+
Sbjct: 5   GGGADGQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVI 64

Query: 73  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 132
           EFL+YLDQFGKTKVH  GC +YGQP PPAPC CPLRQAWGSLDALIGRLRAAYEESG +P
Sbjct: 65  EFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAP 124

Query: 133 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQ 164
           E+NPFA+ A+R+YLR+VR+ QAKARGIPY+KKK+  T  Q
Sbjct: 125 ESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQ 164

[Close]

BLAST of Carg19134 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.7e-60
Identity = 108/160 (67.50%), Postives = 126/160 (78.75%), Query Frame = 0


Query: 13  GSSSTSSPQPVGSIP---------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 72
           G+ + +  QPV   P         SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+
Sbjct: 7   GADAQAQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVI 66

Query: 73  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 132
           EFL+YLDQFGKTKVH  GC +YGQP PPAPC CPLRQAWGSLDALIGRLRAAYEESG +P
Sbjct: 67  EFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAP 126

Query: 133 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQ 164
           E+NPFA+ A+R+YLR+VR+ QAKARGIPY+KKK+  T  Q
Sbjct: 127 ESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQ 166

[Close]

BLAST of Carg19134 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.2e-98
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGATKDFSEGSSSTSSPQP GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Carg19134 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.5e-98
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQP G IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of Carg19134 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81
Identity = 154/189 (81.48%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 1   MSFEGA--TKDFSEGSSSTSSPQPV--GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MS EG+  +KDFSEGSSS+S        + PSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           C+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGA-------ED 179
           EE+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TT +Q+KG+         
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180

[Close]

BLAST of Carg19134 vs. ExPASy TrEMBL
Match: A0A1S3C1B9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495500 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.0e-81
Identity = 155/188 (82.45%), Postives = 164/188 (87.23%), Query Frame = 0


Query: 1   MSFEGA-TKDFSEGSSSTSSPQPV--GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG+ +KDFSEGSSS+S        + PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGA------EDS 179
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKT+T NQ+KG         S
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQDSSS 180

[Close]

BLAST of Carg19134 vs. ExPASy TrEMBL
Match: A0A5D3C6X1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003300 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 155/189 (82.01%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MSFEGA-TKDFSEGSSSTSSPQPV--GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG+ +KDFSEGSSS+S        + PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTT--TTNQSKGA------ED 179
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK T  T NQ+KG         
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQDSS 180

[Close]

BLAST of Carg19134 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 277.7 bits (709), Expect = 6.5e-75
Identity = 134/158 (84.81%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 16  STSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKT 75
           S+ S  PV   PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKT
Sbjct: 14  SSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKT 73

Query: 76  KVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRV 135
           KVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRV
Sbjct: 74  KVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRV 133

Query: 136 YLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           YLR+VRECQAKARGIPY KKKKK  T     G EDS+S
Sbjct: 134 YLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Carg19134 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 277.7 bits (709), Expect = 6.5e-75
Identity = 134/158 (84.81%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 16  STSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKT 75
           S+ S  PV   PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQFGKT
Sbjct: 14  SSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKT 73

Query: 76  KVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRV 135
           KVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASGAIRV
Sbjct: 74  KVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRV 133

Query: 136 YLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           YLR+VRECQAKARGIPY KKKKK  T     G EDS+S
Sbjct: 134 YLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Carg19134 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-60
Identity = 113/177 (63.84%), Postives = 133/177 (75.14%), Query Frame = 0


Query: 8   KDFSEGSSS-TSSPQPVGSIP---------SRYESQKRRDWNTFCQYLKNQRPPVPLSHC 67
           K  +EGSS   S PQP    P         SRYESQKRRDWNTFCQYL+NQ+PPV +S C
Sbjct: 9   KGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQC 68

Query: 68  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 127
             NH+L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPL+QAWGSLDALIGRLRAA+E
Sbjct: 69  GSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFE 128

Query: 128 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTN--QSKGAEDSTS 173
           E+GG PE NPFA G IRV+LR+VR+ QAKARG+PYKK+KK    N  +S   ED T+
Sbjct: 129 ENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGTT 185

[Close]

BLAST of Carg19134 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-59
Identity = 113/165 (68.48%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 7   TKDFSEGSSSTSS-------PQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSC 66
           TKD  +  SS+S+       PQP   + SRYESQKRRDWNTF QYLK+Q PP+ +S    
Sbjct: 9   TKDPPDHPSSSSNHHKQPLPPQPQQPL-SRYESQKRRDWNTFVQYLKSQNPPLMMSQFDY 68

Query: 67  NHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE- 126
            HVL FLRYLDQFGKTKVH Q C+F+GQP+PP PCTCPL+QAWGSLDALIGRLRAAYEE 
Sbjct: 69  THVLSFLRYLDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEH 128

Query: 127 SGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQ 164
            GGSP+TNPFA+G+IRV+LR+VRE QAKARGIPY+KKK+  T N+
Sbjct: 129 GGGSPDTNPFANGSIRVHLREVRESQAKARGIPYRKKKRRKTKNE 172

[Close]

BLAST of Carg19134 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 224.6 bits (571), Expect = 6.5e-59
Identity = 103/145 (71.03%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 13  GSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQF 72
           G S  SSP    + PSRYESQKRRDWNTF QYLKN +PP+ LS CS  HV+EFL+YLDQF
Sbjct: 18  GPSFVSSPP---ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQF 77

Query: 73  GKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGA 132
           GKTKVHV  C ++G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEE+GG P++NPFA+ A
Sbjct: 78  GKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARA 137

Query: 133 IRVYLRDVRECQAKARGIPYKKKKK 158
           +R+YLR+VRE QAKARGIPY+KKK+
Sbjct: 138 VRIYLREVRESQAKARGIPYEKKKR 159

The following BLAST results are available for this feature:

BLAST of Carg19134 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022931.1	5.5e-100	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
KAG6589232.1	1.3e-98	99.44	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022930813.1	8.7e-98	98.88	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
XP_022988968.1	1.1e-97	97.75	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]
XP_023530720.1	2.5e-97	98.32	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19134 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	9.1e-74	84.81	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
A2XED8	3.0e-61	71.79	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	3.0e-61	71.79	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q6ATW6	4.4e-60	68.13	Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1	[more]
A2Y5N0	5.7e-60	67.50	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]

BLAST of Carg19134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWG4	4.2e-98	98.88	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JNV9	5.5e-98	97.75	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0K2D1	2.7e-81	81.48	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]
A0A1S3C1B9	8.0e-81	82.45	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A5D3C6X1	1.8e-80	82.01	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Carg19134 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	6.5e-75	84.81	Protein of unknown function (DUF640)	[more]
AT2G42610.2	6.5e-75	84.81	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.2e-60	63.84	Protein of unknown function (DUF640)	[more]
AT4G18610.1	1.0e-59	68.48	Protein of unknown function (DUF640)	[more]
AT1G07090.1	6.5e-59	71.03	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 19..142 e-value: 1.6E-65 score: 219.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 29..156 score: 80.158211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR31165:SF72	DUF640 FAMILY PROTEIN	coord: 6..176
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 6..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19134-RA	Carg19134-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus