Carg18995 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18995
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionglycine-rich RNA-binding protein GRP1A-like
LocationCarg_Chr18: 9671516 .. 9672811 (+)
RNA-Seq ExpressionCarg18995
SyntenyCarg18995
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATAATAGCATCTTCTCTGCAAGAAATCTTGCCAACAGGTTAGTACACCAATTTTTCTCTCATTATATGCTCATATTTTTGTGACACAAATTTTCTGCTTAAATAAGACGGGATTTATAAGTTCATTTATTGTATTTATTCTTTTTAAAATAAATTATGTAAAAGGAAGTTATTAAAAAGTAAAATGAGATAAACCATAAAAGTCTGTAAAGACAAAGTTGCATAATGAGTCAAAAAAAGACCTGAAATAAAGTGTGCAGTCCGTAAACGACATTCGGATGAATGAAGATAGAATAATAAAAAGATGAATAGAAGAATACAGGTATCTTTTAATGTCAAAATAATGAATATATAAATCAAATAAAGTTTAATATTCTATGGAAAGATATATAGATAACGTTTAATAAAGAAAATAAATATATAAATCATGTTAAATAAAGAAAATAAATATACAAATCAAGTTTAATAGAGAAAATAAATCTATAAATAAATTTTAATAAAGAAAATAAATATATAAATAAAGTTTAGTAAAGAAAATAAAAATAAAAATAAAAATAAAGAAAATAAATATACATGTAAATTTTAATAGAGAAAATAAATCTATAAATAAACTTTAATATAATCGTTTTGAGTTTTTTTTTTTTTTTAAATAAAAGTTGTTATTATTACGATTACTATTATATCTATTTTAATTAGAATAAACTCCAAATCGATAATAAAAATTAATATTAATATTCAAATATAAAAATTAAAATTAAATATTTTAATGTACAAAACACCAAAAATATAATGGGTCTCGAGACGGAGATCATCAGAATAATATTTTAAAATGAAGAAACTTACGCTGAAATGTAAACTTTAAAAAATGAAGGGAAAAAAAGTAATAAAACGAAATTTATTATATCCTCATTCCTAAACCAGATTCCATATGCATGCAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGGGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCAAGGGGAGGTGGTGCCAGGGGAGGTGGTGCCAGCAGAGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGCCGCCGAGGTCGACCAGTCAATGCAGGAACTCGCCATGAGAACAACATGTGGCTTCTGGTAGCTGCAGCTTTGGCTGCCATTGCACATCTGTAA

mRNA sequence

ATGGCCATAATAGCATCTTCTCTGCAAGAAATCTTGCCAACAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGGGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCAAGGGGAGGTGGTGCCAGGGGAGGTGGTGCCAGCAGAGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGCCGCCGAGGTCGACCAGTCAATGCAGGAACTCGCCATGAGAACAACATGTGGCTTCTGGTAGCTGCAGCTTTGGCTGCCATTGCACATCTGTAA

Coding sequence (CDS)

ATGGCCATAATAGCATCTTCTCTGCAAGAAATCTTGCCAACAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGGGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCAAGGGGAGGTGGTGCCAGGGGAGGTGGTGCCAGCAGAGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGCCGCCGAGGTCGACCAGTCAATGCAGGAACTCGCCATGAGAACAACATGTGGCTTCTGGTAGCTGCAGCTTTGGCTGCCATTGCACATCTGTAA

Protein sequence

MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAALAAIAHL
Homology
BLAST of Carg18995 vs. NCBI nr
Match: KAG7012953.1 (hypothetical protein SDJN02_25707, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.1 bits (614), Expect = 5.3e-60
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGG 60
           MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGG
Sbjct: 1   MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGG 60

Query: 61  GARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 120
           GARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL
Sbjct: 61  GARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 120

Query: 121 VAAALAAIAHL 132
           VAAALAAIAHL
Sbjct: 121 VAAALAAIAHL 131

BLAST of Carg18995 vs. NCBI nr
Match: XP_022945097.1 (uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 2.2e-53
Identity = 121/131 (92.37%), Postives = 121/131 (92.37%), Query Frame = 0

Query: 1   MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGG 60
           MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAH       
Sbjct: 17  MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAH------- 76

Query: 61  GARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 120
              GGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL
Sbjct: 77  ---GGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 136

Query: 121 VAAALAAIAHL 132
           VAAALAAIAHL
Sbjct: 137 VAAALAAIAHL 137

BLAST of Carg18995 vs. NCBI nr
Match: XP_022945098.1 (uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata])

HSP 1 Score: 210.7 bits (535), Expect = 7.7e-51
Identity = 116/131 (88.55%), Postives = 116/131 (88.55%), Query Frame = 0

Query: 1   MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGG 60
           MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHG      
Sbjct: 17  MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHG------ 76

Query: 61  GARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 120
                    GGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL
Sbjct: 77  ---------GGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 132

Query: 121 VAAALAAIAHL 132
           VAAALAAIAHL
Sbjct: 137 VAAALAAIAHL 132

BLAST of Carg18995 vs. NCBI nr
Match: KAG6573889.1 (hypothetical protein SDJN03_27776, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-47
Identity = 110/117 (94.02%), Postives = 110/117 (94.02%), Query Frame = 0

Query: 15  ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGARGGGASRGGARG 74
           ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGA  G    GGARG
Sbjct: 4   ESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGASRG----GGARG 63

Query: 75  GGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAALAAIAHL 132
           GGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAG RHENNMWLLVAAALAAIAHL
Sbjct: 64  GGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVAAALAAIAHL 116

BLAST of Carg18995 vs. NCBI nr
Match: XP_022968347.1 (uncharacterized protein LOC111467612 isoform X2 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 111/129 (86.05%), Postives = 112/129 (86.82%), Query Frame = 0

Query: 4   IASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGAR 63
           IASSLQEIL TESNCHQKTNTEKHGEDGATNQIGRRN ACAITVSQAVAH          
Sbjct: 19  IASSLQEILATESNCHQKTNTEKHGEDGATNQIGRRNRACAITVSQAVAH---------- 78

Query: 64  GGGASRGGARGGGGVSSPHT-GGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVA 123
           GGGASRGGA  GGGVSSPHT GGSAVIPIYVAGSAQAQRRRGRPVNAG RHEN+MWLLVA
Sbjct: 79  GGGASRGGASRGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENDMWLLVA 137

Query: 124 AALAAIAHL 132
           AALAA AHL
Sbjct: 139 AALAATAHL 137

BLAST of Carg18995 vs. ExPASy TrEMBL
Match: A0A6J1G000 (uncharacterized protein LOC111449437 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449437 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 121/131 (92.37%), Postives = 121/131 (92.37%), Query Frame = 0

Query: 1   MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGG 60
           MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAH       
Sbjct: 17  MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAH------- 76

Query: 61  GARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 120
              GGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL
Sbjct: 77  ---GGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 136

Query: 121 VAAALAAIAHL 132
           VAAALAAIAHL
Sbjct: 137 VAAALAAIAHL 137

BLAST of Carg18995 vs. ExPASy TrEMBL
Match: A0A6J1FZV5 (uncharacterized protein LOC111449437 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449437 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.7e-51
Identity = 116/131 (88.55%), Postives = 116/131 (88.55%), Query Frame = 0

Query: 1   MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGG 60
           MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHG      
Sbjct: 17  MAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHG------ 76

Query: 61  GARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 120
                    GGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL
Sbjct: 77  ---------GGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLL 132

Query: 121 VAAALAAIAHL 132
           VAAALAAIAHL
Sbjct: 137 VAAALAAIAHL 132

BLAST of Carg18995 vs. ExPASy TrEMBL
Match: A0A6J1HTB9 (uncharacterized protein LOC111467612 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467612 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.1e-46
Identity = 111/129 (86.05%), Postives = 112/129 (86.82%), Query Frame = 0

Query: 4   IASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGGAR 63
           IASSLQEIL TESNCHQKTNTEKHGEDGATNQIGRRN ACAITVSQAVAH          
Sbjct: 19  IASSLQEILATESNCHQKTNTEKHGEDGATNQIGRRNRACAITVSQAVAH---------- 78

Query: 64  GGGASRGGARGGGGVSSPHT-GGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVA 123
           GGGASRGGA  GGGVSSPHT GGSAVIPIYVAGSAQAQRRRGRPVNAG RHEN+MWLLVA
Sbjct: 79  GGGASRGGASRGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENDMWLLVA 137

Query: 124 AALAAIAHL 132
           AALAA AHL
Sbjct: 139 AALAATAHL 137

BLAST of Carg18995 vs. ExPASy TrEMBL
Match: A0A6J1HUL7 (uncharacterized protein LOC111467612 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467612 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.8e-45
Identity = 113/130 (86.92%), Postives = 114/130 (87.69%), Query Frame = 0

Query: 4   IASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGA-RGGGA 63
           IASSLQEIL TESNCHQKTNTEKHGEDGATNQIGRRN ACAITVSQAVAHGGGA RGGG 
Sbjct: 19  IASSLQEILATESNCHQKTNTEKHGEDGATNQIGRRNRACAITVSQAVAHGGGASRGGGV 78

Query: 64  RGGGASRGGARGGGGVSSPHT-GGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLV 123
                  GGA  GGGVSSPHT GGSAVIPIYVAGSAQAQRRRGRPVNAG RHEN+MWLLV
Sbjct: 79  SSPHTVGGGASRGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENDMWLLV 138

Query: 124 AAALAAIAHL 132
           AAALAA AHL
Sbjct: 139 AAALAATAHL 148

BLAST of Carg18995 vs. ExPASy TrEMBL
Match: A0A6J1JB47 (uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 78/130 (60.00%), Postives = 90/130 (69.23%), Query Frame = 0

Query: 2   AIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQAVAHGGGARGGG 61
           AI ++  Q+ILPTE N HQKTN EKHG+DG TN+I    SA AITVSQ + HG  A GGG
Sbjct: 20  AISSARQQQILPTEPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGIGHGSAA-GGG 79

Query: 62  ARGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLV 121
             GGG   G  + GG       GG+AVIP+Y AGSAQA  R+GRP NAG  +ENNM LLV
Sbjct: 80  ENGGG---GRPQAGG-------GGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLV 138

Query: 122 AAALAAIAHL 132
           A+ LAAIAHL
Sbjct: 140 ASVLAAIAHL 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7012953.15.3e-60100.00hypothetical protein SDJN02_25707, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022945097.12.2e-5392.37uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata][more]
XP_022945098.17.7e-5188.55uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata][more]
KAG6573889.13.9e-4794.02hypothetical protein SDJN03_27776, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022968347.11.3e-4586.05uncharacterized protein LOC111467612 isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G0001.0e-5392.37uncharacterized protein LOC111449437 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FZV53.7e-5188.55uncharacterized protein LOC111449437 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HTB96.1e-4686.05uncharacterized protein LOC111467612 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HUL71.8e-4586.92uncharacterized protein LOC111467612 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JB472.5e-2360.00uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18995-RACarg18995-RAmRNA