Carg18972 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18972
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS
Location	Carg_Chr17: 5964335 .. 5964834 (-)
RNA-Seq Expression	Carg18972
Synteny	Carg18972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACAAATCAACATGATGAAAGGATTCTGTACATTTAACATCACATTTTGACGTAACACTTGATACTTAGTTGCGTACAAATTGAATATGTTCCTTCTCCAACTTTGCAGAGCATAATAAACAAGAGTCTCGTGAAGAGTTCAGCGATTGGCCTCATGGATTGCTAGCAATTGGAACTTTTGGCAACAATGAGATTAAAGATGAACAAGACATACAAGAGGAGGAGGATCCATCTTCTTCAGAAGAGATAGTTGATATCTCTCCTGAAGAAGTTGGTAAATTACAGAAAGAGTTAACGAAGCTTTTATCTCGAAAACCGAACGCCGAAAAGCAGGTTGCAGATCTTCCATTGGATAGATTTCTCAACTGTCCTTCAAGCTTGGAGGTTGACAGAAGAATCAGCAATCCACTTTGCAGTGATTCAGATGATAAAGATGAAGATATTGAAAGAACCATTGGTCTTATCATTGGGAAATGCAAAGACATTTGGGCTGAT

mRNA sequence

ATGGAGCATAATAAACAAGAGTCTCGTGAAGAGTTCAGCGATTGGCCTCATGGATTGCTAGCAATTGGAACTTTTGGCAACAATGAGATTAAAGATGAACAAGACATACAAGAGGAGGAGGATCCATCTTCTTCAGAAGAGATAGTTGATATCTCTCCTGAAGAAGTTGGTAAATTACAGAAAGAGTTAACGAAGCTTTTATCTCGAAAACCGAACGCCGAAAAGCAGGTTGCAGATCTTCCATTGGATAGATTTCTCAACTGTCCTTCAAGCTTGGAGGTTGACAGAAGAATCAGCAATCCACTTTGCAGTGATTCAGATGATAAAGATGAAGATATTGAAAGAACCATTGGTCTTATCATTGGGAAATGCAAAGACATTTGGGCTGAT

Coding sequence (CDS)

ATGGAGCATAATAAACAAGAGTCTCGTGAAGAGTTCAGCGATTGGCCTCATGGATTGCTAGCAATTGGAACTTTTGGCAACAATGAGATTAAAGATGAACAAGACATACAAGAGGAGGAGGATCCATCTTCTTCAGAAGAGATAGTTGATATCTCTCCTGAAGAAGTTGGTAAATTACAGAAAGAGTTAACGAAGCTTTTATCTCGAAAACCGAACGCCGAAAAGCAGGTTGCAGATCTTCCATTGGATAGATTTCTCAACTGTCCTTCAAGCTTGGAGGTTGACAGAAGAATCAGCAATCCACTTTGCAGTGATTCAGATGATAAAGATGAAGATATTGAAAGAACCATTGGTCTTATCATTGGGAAATGCAAAGACATTTGGGCTGAT

Protein sequence

MEHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLIIGKCKDIWAD

Homology

[Close]

BLAST of Carg18972 vs. NCBI nr
Match: KAG7013977.1 (hypothetical protein SDJN02_24147, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.9 bits (668), Expect = 2.9e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MEHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQ 60
           MEHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQ
Sbjct: 1   MEHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQ 60

Query: 61  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLI 120
           KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLI
Sbjct: 61  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLI 120

Query: 121 IGKCKDIWAD 131
           IGKCKDIWAD
Sbjct: 121 IGKCKDIWAD 130

[Close]

BLAST of Carg18972 vs. NCBI nr
Match: XP_022953613.1 (uncharacterized protein LOC111456096 [Cucurbita moschata])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK
Sbjct: 27  QHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 86

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII
Sbjct: 87  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 146

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 147 GKCKDIWAD 155

[Close]

BLAST of Carg18972 vs. NCBI nr
Match: KAG6575434.1 (hypothetical protein SDJN03_26073, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK
Sbjct: 27  QHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 86

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII
Sbjct: 87  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 146

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 147 GKCKDIWAD 155

[Close]

BLAST of Carg18972 vs. NCBI nr
Match: XP_023547536.1 (uncharacterized protein LOC111806450 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +H KQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK
Sbjct: 27  QHKKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 86

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSD DDKDEDIERTIGLII
Sbjct: 87  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDLDDKDEDIERTIGLII 146

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 147 GKCKDIWAD 155

[Close]

BLAST of Carg18972 vs. NCBI nr
Match: XP_022992360.1 (uncharacterized protein LOC111488695 [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +H KQESREEFSDWPHGLLAIGTFGNN+IKDEQDIQEEEDPSSSE+IVDISPEEVGKLQK
Sbjct: 30  QHKKQESREEFSDWPHGLLAIGTFGNNDIKDEQDIQEEEDPSSSEQIVDISPEEVGKLQK 89

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII
Sbjct: 90  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 149

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 150 GKCKDIWAD 158

[Close]

BLAST of Carg18972 vs. ExPASy Swiss-Prot
Match: A0A251PW43 (Protein DEEPER ROOTING 1 OS=Prunus persica OX=3760 GN=DRO1 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-46
Identity = 99/133 (74.44%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 5   KQESREEFSDWPHGLLAIGTFGNNEIK----DEQDIQEEEDPSSSEEIVD-ISPEEVGKL 64
           KQE REEFSDWPHGLLAIGTFGNN++K    + QDIQ  EDP+SSEEI+D  +PEEVGKL
Sbjct: 31  KQEPREEFSDWPHGLLAIGTFGNNDLKENAAESQDIQ--EDPTSSEEILDNFTPEEVGKL 90

Query: 65  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDS--DDKDEDIERTI 124
            KELTKLL+RKPN EK++ADLPLDRFLNCPSSLEVDRR SN LCSDS  D KDEDIE+TI
Sbjct: 91  HKELTKLLTRKPNIEKEIADLPLDRFLNCPSSLEVDRRNSNALCSDSADDHKDEDIEKTI 150

Query: 125 GLIIGKCKDIWAD 131
            +I+G+CK+I  D
Sbjct: 151 SVILGRCKEICGD 161

[Close]

BLAST of Carg18972 vs. ExPASy Swiss-Prot
Match: A0A072TLV8 (Protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS OS=Medicago truncatula OX=3880 GN=NGR PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.5e-44
Identity = 92/130 (70.77%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 5   KQESREEFSDWPHGLLAIGTFG-NNEIKD--EQDIQEEEDPSSSEEIVDISPEEVGKLQK 64
           K E REEFSDWPH LLAIGTFG NNEI    E    ++EDPSSSEE+ D +PEE+GKLQK
Sbjct: 30  KPEPREEFSDWPHSLLAIGTFGNNNEITQNIENQNTQQEDPSSSEEVPDFTPEEIGKLQK 89

Query: 65  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDS-DDKDEDIERTIGLI 124
           ELT+LL RKPN EK++++LPLDRFLNCPSSLEVDRRISN LCS+S  DKDEDIE+T+ +I
Sbjct: 90  ELTRLLRRKPNVEKEISELPLDRFLNCPSSLEVDRRISNALCSESGGDKDEDIEKTLSVI 149

Query: 125 IGKCKDIWAD 131
           + KCKDI A+
Sbjct: 150 LDKCKDICAE 159

[Close]

BLAST of Carg18972 vs. ExPASy Swiss-Prot
Match: Q58G53 (Protein LAZY 2 OS=Arabidopsis thaliana OX=3702 GN=LAZY2 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-32
Identity = 83/152 (54.61%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFG--------------NNEIKDEQ----DIQEEEDPSS 62
           H KQE REEFSDWPH LLAIGTFG              + EI+ E+      ++EE+PSS
Sbjct: 27  HVKQEPREEFSDWPHALLAIGTFGTTSNSVSENESKNVHEEIEAEKKCTAQSEQEEEPSS 86

Query: 63  SEEIVDISPEEVGKLQKELTKLLSRKPNAEKQV-----ADLPLDRFLNCPSSLEVDRRIS 122
           S  + D +PEEVGKLQKEL KLLSR    +  V      +LPLDRFLNCPSSLEVDRRIS
Sbjct: 87  SVNLEDFTPEEVGKLQKELMKLLSRTKKRKSDVNRELMKNLPLDRFLNCPSSLEVDRRIS 146

Query: 123 NPLC----SDSDDKDEDIERTIGLIIGKCKDI 128
           N L     S  ++K+ED+ERTI +I+G+CK+I
Sbjct: 147 NALSAVVDSSEENKEEDMERTINVILGRCKEI 178

[Close]

BLAST of Carg18972 vs. ExPASy Swiss-Prot
Match: Q5XVG3 (Protein LAZY 4 OS=Arabidopsis thaliana OX=3702 GN=LAZY4 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-32
Identity = 82/145 (56.55%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 9   REEFSDWPHGLLAIGTFGNN----EIKDEQDIQEE----------------EDPSSSEEI 68
           REEF+DWPHGLLAIGTFGN     +  D++ IQEE                ++ SSS+++
Sbjct: 32  REEFNDWPHGLLAIGTFGNKKQTPQTLDQEVIQEETVSNLHVEGRQAQDTDQELSSSDDL 91

Query: 69  -VDISPEEVGKLQKELTKLLS-----RKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL 128
             D +PEEVGKLQKELTKLL+     RK +  +++A+LPLDRFLNCPSSLEVDRRISN L
Sbjct: 92  EEDFTPEEVGKLQKELTKLLTRRSKKRKSDVNRELANLPLDRFLNCPSSLEVDRRISNAL 151

[Close]

BLAST of Carg18972 vs. ExPASy Swiss-Prot
Match: Q69P88 (Protein DEEPER ROOTING 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DRO1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 9   REEFSDWPHGLLAIGTFGNNEIKDEQDIQEEED-PSSSEEIVDISPEEVGKLQKELTKLL 68
           ++EFSDWP  LLAIGTFGN +I++   ++   D   S ++ V  + EEV K++KE   LL
Sbjct: 37  KDEFSDWPQSLLAIGTFGNKQIEEVAQVENSSDNVQSVQDTVKFTEEEVDKIRKEFETLL 96

Query: 69  SRKPNAEKQ 77
           + K  AE Q
Sbjct: 97  AIKDQAEAQ 105

[Close]

BLAST of Carg18972 vs. ExPASy TrEMBL
Match: A0A6J1GNT0 (uncharacterized protein LOC111456096 OS=Cucurbita moschata OX=3662 GN=LOC111456096 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK
Sbjct: 27  QHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 86

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII
Sbjct: 87  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 146

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 147 GKCKDIWAD 155

[Close]

BLAST of Carg18972 vs. ExPASy TrEMBL
Match: A0A6J1JVH6 (uncharacterized protein LOC111488695 OS=Cucurbita maxima OX=3661 GN=LOC111488695 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +H KQESREEFSDWPHGLLAIGTFGNN+IKDEQDIQEEEDPSSSE+IVDISPEEVGKLQK
Sbjct: 30  QHKKQESREEFSDWPHGLLAIGTFGNNDIKDEQDIQEEEDPSSSEQIVDISPEEVGKLQK 89

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII
Sbjct: 90  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 149

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 150 GKCKDIWAD 158

[Close]

BLAST of Carg18972 vs. ExPASy TrEMBL
Match: A0A0A0K7Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448840 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.7e-56
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQ---EEEDPSSSEEIVDISPEEVGKL 62
           H KQESREEFSDWPHGLLAIGTFGNNEIKD+ D +   EEE+PSSSEEIVD SPEEVGKL
Sbjct: 28  HKKQESREEFSDWPHGLLAIGTFGNNEIKDDSDQREDIEEENPSSSEEIVDFSPEEVGKL 87

Query: 63  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGL 122
           QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL SDSDDKDEDIERTI L
Sbjct: 88  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLSSDSDDKDEDIERTISL 147

Query: 123 IIGKCKDIWAD 131
           IIGKCKDI AD
Sbjct: 148 IIGKCKDICAD 158

[Close]

BLAST of Carg18972 vs. ExPASy TrEMBL
Match: A0A5A7UYW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001370 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.8e-56
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQ--EEEDPSSSEEIVDISPEEVGKLQ 62
           H KQESREEFSDWPHGLLAIGTFGNNEIKD+ + +  EEE+PSSSEEIVD SPEEVGKLQ
Sbjct: 28  HKKQESREEFSDWPHGLLAIGTFGNNEIKDDSERRDIEEENPSSSEEIVDFSPEEVGKLQ 87

Query: 63  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLI 122
           KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL SDSDDKDEDIERTI LI
Sbjct: 88  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLSSDSDDKDEDIERTISLI 147

Query: 123 IGKCKDIWAD 131
           IGKCKDI AD
Sbjct: 148 IGKCKDICAD 157

[Close]

BLAST of Carg18972 vs. ExPASy TrEMBL
Match: A0A1S3CI43 (uncharacterized protein LOC103500678 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500678 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.8e-56
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQ--EEEDPSSSEEIVDISPEEVGKLQ 62
           H KQESREEFSDWPHGLLAIGTFGNNEIKD+ + +  EEE+PSSSEEIVD SPEEVGKLQ
Sbjct: 28  HKKQESREEFSDWPHGLLAIGTFGNNEIKDDSERRDIEEENPSSSEEIVDFSPEEVGKLQ 87

Query: 63  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLI 122
           KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL SDSDDKDEDIERTI LI
Sbjct: 88  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLSSDSDDKDEDIERTISLI 147

Query: 123 IGKCKDIWAD 131
           IGKCKDI AD
Sbjct: 148 IGKCKDICAD 157

[Close]

BLAST of Carg18972 vs. TAIR 10
Match: AT1G17400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 83/152 (54.61%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFG--------------NNEIKDEQ----DIQEEEDPSS 62
           H KQE REEFSDWPH LLAIGTFG              + EI+ E+      ++EE+PSS
Sbjct: 27  HVKQEPREEFSDWPHALLAIGTFGTTSNSVSENESKNVHEEIEAEKKCTAQSEQEEEPSS 86

Query: 63  SEEIVDISPEEVGKLQKELTKLLSRKPNAEKQV-----ADLPLDRFLNCPSSLEVDRRIS 122
           S  + D +PEEVGKLQKEL KLLSR    +  V      +LPLDRFLNCPSSLEVDRRIS
Sbjct: 87  SVNLEDFTPEEVGKLQKELMKLLSRTKKRKSDVNRELMKNLPLDRFLNCPSSLEVDRRIS 146

Query: 123 NPLC----SDSDDKDEDIERTIGLIIGKCKDI 128
           N L     S  ++K+ED+ERTI +I+G+CK+I
Sbjct: 147 NALSAVVDSSEENKEEDMERTINVILGRCKEI 178

[Close]

BLAST of Carg18972 vs. TAIR 10
Match: AT1G72490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 82/145 (56.55%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 9   REEFSDWPHGLLAIGTFGNN----EIKDEQDIQEE----------------EDPSSSEEI 68
           REEF+DWPHGLLAIGTFGN     +  D++ IQEE                ++ SSS+++
Sbjct: 32  REEFNDWPHGLLAIGTFGNKKQTPQTLDQEVIQEETVSNLHVEGRQAQDTDQELSSSDDL 91

Query: 69  -VDISPEEVGKLQKELTKLLS-----RKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL 128
             D +PEEVGKLQKELTKLL+     RK +  +++A+LPLDRFLNCPSSLEVDRRISN L
Sbjct: 92  EEDFTPEEVGKLQKELTKLLTRRSKKRKSDVNRELANLPLDRFLNCPSSLEVDRRISNAL 151

The following BLAST results are available for this feature:

BLAST of Carg18972 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013977.1	2.9e-66	100.00	hypothetical protein SDJN02_24147, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022953613.1	3.2e-65	99.22	uncharacterized protein LOC111456096 [Cucurbita moschata]	[more]
KAG6575434.1	3.2e-65	99.22	hypothetical protein SDJN03_26073, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023547536.1	7.8e-64	97.67	uncharacterized protein LOC111806450 [Cucurbita pepo subsp. pepo]	[more]
XP_022992360.1	7.8e-64	96.90	uncharacterized protein LOC111488695 [Cucurbita maxima]	[more]

BLAST of Carg18972 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A251PW43	1.2e-46	74.44	Protein DEEPER ROOTING 1 OS=Prunus persica OX=3760 GN=DRO1 PE=2 SV=1	[more]
A0A072TLV8	5.5e-44	70.77	Protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS OS=Medicago truncatula OX=3880 GN...	[more]
Q58G53	1.7e-32	54.61	Protein LAZY 2 OS=Arabidopsis thaliana OX=3702 GN=LAZY2 PE=2 SV=1	[more]
Q5XVG3	1.7e-32	56.55	Protein LAZY 4 OS=Arabidopsis thaliana OX=3702 GN=LAZY4 PE=1 SV=1	[more]
Q69P88	1.1e-07	44.93	Protein DEEPER ROOTING 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DRO1 PE=1 S...	[more]

BLAST of Carg18972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNT0	1.5e-65	99.22	uncharacterized protein LOC111456096 OS=Cucurbita moschata OX=3662 GN=LOC1114560...	[more]
A0A6J1JVH6	3.8e-64	96.90	uncharacterized protein LOC111488695 OS=Cucurbita maxima OX=3661 GN=LOC111488695...	[more]
A0A0A0K7Q1	1.7e-56	90.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448840 PE=3 SV=1	[more]
A0A5A7UYW4	3.8e-56	90.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CI43	3.8e-56	90.00	uncharacterized protein LOC103500678 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg18972 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17400.1	1.2e-33	54.61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G72490.1	1.2e-33	56.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
IPR044683	LAZY family	PANTHER	PTHR34045	OS03G0406300 PROTEIN	coord: 2..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18972-RA	Carg18972-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0040008	regulation of growth