Carg18942 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18942
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 5756309 .. 5757730 (-)
RNA-Seq Expression	Carg18942
Synteny	Carg18942

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGCGGCGGGAGTTCTCTTCACCCGCGTTCTTGCATTAGTCGCAACGGCGCGTATTTAAGACTCATTTCGTTCACTTTCGAGTTCGCGTTCGAGTTCTCTCCACATTTTCCACATTTGGTTCAGAGAAACCAATTTGCTTAGGGATTAGTGTTTATGTGACAGAGGGAGGAGTTCGTGTACCGACGAAGCCTCTTCTCCATTGGAATTTTGGAACGAGGAGAGCTAGATTGGTAGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCATCGACCTTGCCGCTTCGGATTCTGCTTCTACTCAGATTCCTTCCACTTTGAAGGATCTCTGGACAAAAATTCCATCGTCTTCTTCCTCCAAATCAGACGTTCTCTCCCGCAGCACTGGTAGAAGCAATGCGGAGATTGTTACTGATTTCATCTCTTTCAAGGTCCTCCATATTCTATTCAGTTTCGTTTCGCTTCTTTGATCTGGTATTCGTTTTGATCGAATCAAACATTGCGATGTCATGGACGTCAGATGTATAAAGCGTGGACTGCTCTTGAGAAGGCGCCTGATAAATCGTTTAAAAATAAACTTTGTTGAGGATTATTGGGATTGGGAGTGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATCTCCATTGGTCTGAGGCCTTTTGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGACAATATCATCATGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGAGTCGTGATTTCTAACATGGTATCAGAGCCATGCCCTAAACCTAACCATGCCAATAGAATCCTCAAATATCGAACAAAAAATGGCGAGCCTCGAAGGTATAGTCAAAAGTGACTAAAGTGTCGAACAAATGGTGTACTTTGTTCGAGGGCTCCAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAAGCTCCATAAGCCTCCCTATTGTGGAGAGTCGTGATTCCTAACAAACTTCACGGGTAAAGTGTCGCCAGCGCGATTCTATTAGTCCTATGTCACATTTCTAGTGAAAGCAACTGGATCTTTATTGATTTTTCTGCTTGTAGGATCGGATTGATGCTTTTGTCTCGAGTTACGCCGTCTGAGATATTCTTGAAGTCAATAACTAAAGATATCACGAGTGTCGAAATAACATATCCATCGAGGTTTCATCTCTTTTACTTCGTTATTTTAAAAACATTGCTGCTTCTTTATCTACTTGAAATCCATTTCCGATGCCTTTTTCAATACTTAATTACATAAATTGTTACTATTATCACAAATTGTTATGTTACTTCACTGATTTCTTGCGACATTACAGTTTGAATCCACGGCTAGTTCGCAGGAGGTTACGGCATATTGCTCTCAG

mRNA sequence

ATGGGATGCGGCGGGAGTTCTCTTCACCCGCAGGGAGGAGTTCGTGTACCGACGAAGCCTCTTCTCCATTGGAATTTTGGAACGAGGAGAGCTAGATTGGTAGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCATCGACCTTGCCGCTTCGGATTCTGCTTCTACTCAGATTCCTTCCACTTTGAAGGATCTCTGGACAAAAATTCCATCGTCTTCTTCCTCCAAATCAGACGTTCTCTCCCGCAGCACTGGTAGAAGCAATGCGGAGATTGTTACTGATTTCATCTCTTTCAAGGATCGGATTGATGCTTTTGTCTCGAGTTACGCCTTTGAATCCACGGCTAGTTCGCAGGAGGTTACGGCATATTGCTCTCAG

Coding sequence (CDS)

ATGGGATGCGGCGGGAGTTCTCTTCACCCGCAGGGAGGAGTTCGTGTACCGACGAAGCCTCTTCTCCATTGGAATTTTGGAACGAGGAGAGCTAGATTGGTAGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCATCGACCTTGCCGCTTCGGATTCTGCTTCTACTCAGATTCCTTCCACTTTGAAGGATCTCTGGACAAAAATTCCATCGTCTTCTTCCTCCAAATCAGACGTTCTCTCCCGCAGCACTGGTAGAAGCAATGCGGAGATTGTTACTGATTTCATCTCTTTCAAGGATCGGATTGATGCTTTTGTCTCGAGTTACGCCTTTGAATCCACGGCTAGTTCGCAGGAGGTTACGGCATATTGCTCTCAG

Protein sequence

MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFKDRIDAFVSSYAFESTASSQEVTAYCSQ

Homology

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BLAST of Carg18942 vs. NCBI nr
Match: KAG7013948.1 (hypothetical protein SDJN02_24117, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.8 bits (652), Expect = 2.0e-64
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQ 60
           MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQ
Sbjct: 1   MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQ 60

Query: 61  IPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFKDRIDAFVSSYAFESTASS 120
           IPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFKDRIDAFVSSYAFESTASS
Sbjct: 61  IPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFKDRIDAFVSSYAFESTASS 120

Query: 121 QEVTAYCSQ 130
           QEVTAYCSQ
Sbjct: 121 QEVTAYCSQ 129

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BLAST of Carg18942 vs. NCBI nr
Match: KAG6575406.1 (O-fucosyltransferase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-43
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 3   CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI 62
           C G S++  +GGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI
Sbjct: 543 CLGISVYVTEGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI 602

Query: 63  PSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 103
           PSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK
Sbjct: 603 PSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 643

[Close]

BLAST of Carg18942 vs. NCBI nr
Match: XP_022953932.1 (uncharacterized protein LOC111456340 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-41
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 3   CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI 62
           C G S++  +GGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSAS+QI
Sbjct: 44  CLGISVYVTEGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASSQI 103

Query: 63  PSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 103
           PSTLKDLWTKIPSSSSSKSD LSRSTGRSNAEI TDFISFK
Sbjct: 104 PSTLKDLWTKIPSSSSSKSDALSRSTGRSNAEIFTDFISFK 144

[Close]

BLAST of Carg18942 vs. NCBI nr
Match: XP_022991797.1 (uncharacterized protein LOC111488336 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 9.3e-41
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 4   GGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPS 63
           G S    +GGVRVPTKPLLHWNFGTRRARLVV PIRGRNWCFSRSIDLAASDS STQIPS
Sbjct: 41  GISDYVTEGGVRVPTKPLLHWNFGTRRARLVVLPIRGRNWCFSRSIDLAASDSDSTQIPS 100

Query: 64  TLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 103
           TLKDLWTKIPSSSSSKSD LSRSTGRSNAEIVTDFISFK
Sbjct: 101 TLKDLWTKIPSSSSSKSDALSRSTGRSNAEIVTDFISFK 139

[Close]

BLAST of Carg18942 vs. NCBI nr
Match: XP_023548427.1 (uncharacterized protein LOC111807082 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 97/137 (70.80%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 1   MGCGGSSLHP-----------------------------------QGGVRVPTKPLLHWN 60
           MGCGGSSLHP                                   +GGVRVPTKPLLHWN
Sbjct: 1   MGCGGSSLHPRSCIRVRVRVLSTFSTFSTFGSEKPICLGISVYVTEGGVRVPTKPLLHWN 60

Query: 61  FGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSR 103
           FGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI STLKDL TKIPSSSSSKSD LSR
Sbjct: 61  FGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQILSTLKDLLTKIPSSSSSKSDALSR 120

[Close]

BLAST of Carg18942 vs. ExPASy TrEMBL
Match: A0A6J1GPM4 (uncharacterized protein LOC111456340 OS=Cucurbita moschata OX=3662 GN=LOC111456340 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.0e-42
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 3   CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI 62
           C G S++  +GGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSAS+QI
Sbjct: 44  CLGISVYVTEGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASSQI 103

Query: 63  PSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 103
           PSTLKDLWTKIPSSSSSKSD LSRSTGRSNAEI TDFISFK
Sbjct: 104 PSTLKDLWTKIPSSSSSKSDALSRSTGRSNAEIFTDFISFK 144

[Close]

BLAST of Carg18942 vs. ExPASy TrEMBL
Match: A0A6J1JMV6 (uncharacterized protein LOC111488336 OS=Cucurbita maxima OX=3661 GN=LOC111488336 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.5e-41
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 4   GGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPS 63
           G S    +GGVRVPTKPLLHWNFGTRRARLVV PIRGRNWCFSRSIDLAASDS STQIPS
Sbjct: 41  GISDYVTEGGVRVPTKPLLHWNFGTRRARLVVLPIRGRNWCFSRSIDLAASDSDSTQIPS 100

Query: 64  TLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 103
           TLKDLWTKIPSSSSSKSD LSRSTGRSNAEIVTDFISFK
Sbjct: 101 TLKDLWTKIPSSSSSKSDALSRSTGRSNAEIVTDFISFK 139

[Close]

BLAST of Carg18942 vs. ExPASy TrEMBL
Match: A0A0A0K9A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447960 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.9e-26
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 19  KPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSS 78
           K  LHWNFGT RARLVVFPIRGRNWCFSRSI+   SDS+S Q PST KDLWTKI SSSSS
Sbjct: 22  KHFLHWNFGTMRARLVVFPIRGRNWCFSRSIEPTVSDSSSAQTPSTFKDLWTKISSSSSS 81

Query: 79  KSDVLSRSTGRSNAEIVTDFISFK 103
           KSD LS +   +NAEIVTDFIS K
Sbjct: 82  KSDALSIANASNNAEIVTDFISSK 105

[Close]

BLAST of Carg18942 vs. ExPASy TrEMBL
Match: A0A6J1KLS4 (uncharacterized protein LOC111494421 OS=Cucurbita maxima OX=3661 GN=LOC111494421 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           RARLVVFPIRGRNWCFSRS+D AASDSASTQ PSTLKDLWTKI S SSSKSD LS ST  
Sbjct: 2   RARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDALSSSTSS 61

Query: 90  SNAEIVTDFISFK 103
           SNAEIVTDFISFK
Sbjct: 62  SNAEIVTDFISFK 74

[Close]

BLAST of Carg18942 vs. ExPASy TrEMBL
Match: A0A6J1HLD1 (uncharacterized protein LOC111464584 OS=Cucurbita moschata OX=3662 GN=LOC111464584 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           RARLVVFPIRGRNWCFSRS+D AASDSASTQ PSTLKDLWTKI S SSSKSD LS ST  
Sbjct: 2   RARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDALSSSTSS 61

Query: 90  SNAEIVTDFISFK 103
           SNAEIVTDFISFK
Sbjct: 62  SNAEIVTDFISFK 74

[Close]

BLAST of Carg18942 vs. TAIR 10
Match: AT1G53760.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-11
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           RARLVVFPI+G+ WCFSRS+D  A+ S S   P+T++ LW KI S S   +         
Sbjct: 2   RARLVVFPIKGKKWCFSRSVDPFAAQSPSGVTPTTVRGLWKKISSESKPIN--------- 61

Query: 90  SNAEIVTDFISFK 103
           +NAE++ DFIS K
Sbjct: 62  ANAELLVDFISDK 65

[Close]

BLAST of Carg18942 vs. TAIR 10
Match: AT1G53760.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786). )

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-11
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           RARLVVFPI+G+ WCFSRS+D  A+ S S   P+T++ LW KI S S   +         
Sbjct: 2   RARLVVFPIKGKKWCFSRSVDPFAAQSPSGVTPTTVRGLWKKISSESKPIN--------- 61

Query: 90  SNAEIVTDFISFK 103
           +NAE++ DFIS K
Sbjct: 62  ANAELLVDFISDK 65

The following BLAST results are available for this feature:

BLAST of Carg18942 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013948.1	2.0e-64	100.00	hypothetical protein SDJN02_24117, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575406.1	5.8e-43	93.07	O-fucosyltransferase 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022953932.1	1.9e-41	90.10	uncharacterized protein LOC111456340 [Cucurbita moschata]	[more]
XP_022991797.1	9.3e-41	90.91	uncharacterized protein LOC111488336 [Cucurbita maxima]	[more]
XP_023548427.1	2.1e-40	70.80	uncharacterized protein LOC111807082 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18942 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPM4	9.0e-42	90.10	uncharacterized protein LOC111456340 OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]
A0A6J1JMV6	4.5e-41	90.91	uncharacterized protein LOC111488336 OS=Cucurbita maxima OX=3661 GN=LOC111488336...	[more]
A0A0A0K9A3	6.9e-26	76.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447960 PE=4 SV=1	[more]
A0A6J1KLS4	1.0e-24	87.67	uncharacterized protein LOC111494421 OS=Cucurbita maxima OX=3661 GN=LOC111494421...	[more]
A0A6J1HLD1	1.0e-24	87.67	uncharacterized protein LOC111464584 OS=Cucurbita moschata OX=3662 GN=LOC1114645...	[more]

BLAST of Carg18942 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53760.1	4.8e-11	49.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G53760.2	4.8e-11	49.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR28062:SF1	K+-H+ EXCHANGE-LIKE PROTEIN	coord: 30..102
IPR018786	Protein of unknown function DUF2343	PANTHER	PTHR28062	K+-H+ EXCHANGE-LIKE PROTEIN	coord: 30..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18942-RA	Carg18942-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane