Carg18921 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18921
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	pre-mRNA-processing protein 40C
Location	Carg_Chr17: 5622246 .. 5634484 (-)
RNA-Seq Expression	Carg18921
Synteny	Carg18921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGTTAAATGCACTACGCTGGAATTCGGACGTTGGACTTGGGATTGGAAGGCGGAAGCGAAGCACTCCCGCTGCGTCACACACCAATCGGAGATCGGAACCCTAACTTCCGCCTGTTAACTTTCCGGCACCTCATCCACATGTGATCCCCGGCCCCGGCCTCCTCTCCTCTCCCCATCCTGATTCGCTCTTTTTTCATTTCCTCCCTCTCGTCTGCATCGCCGGTGCGGTAGGGTATATTTCCGTTTCCTTTTACTTCCCATGTTTTGTCTTCTCTTCCCGTTGATTTGTTTATTTTCATCGAGTTCTCGCTATTCCGACGAAGTTCGCCGCGAATTCATACGATATGAGCTTGTTAATTGGTATTTTCTTTGGTTATCTTGCTGAAGGAAACTATGTTCACCTGTGGAATTGTAGCTTAGTAAGTATACATGCTTACCGGCTTTCTTCGTGGTTGCAGGTTTCCCCACTTGTTTCTGCTTAGCTACGTTTCATTTCACCATGTCTTCAGCATCAACCGTCTCCCAATCCATGTCACTACCTGCTCCGCCTACTTCTAATTCTGCAGCTAATGGATCTTCAATTCCCAATTTGATTCCGGCCACTTCACCAGTTCCTCCTGCCCAATCTTTCCATATTCACCAACTTGCGCCTGGAACTCCGATGGTTCCTGGTCCACCGGGAATGTCACCGTCTATGCCAGTTATGTTTCCACCTAGCGATTCATCTGCTTCTTCCACTATCCCAGGACCCAATATGCATGCAGCTCCTAACTCAATAAATACTTCTGTTCGTCCACAAATATGTGGTTCCTATCCTTCTCTAGCTCCCGTTGTTTCTCCACCTCATGCGATCTGGTTTCAGCCTCCTCAGTTGGGAGGCATGCCCAGACCTCCCTTTCTGCCGTACCCTGCTTCTTATCATGGCCCTCTTCCTTTTCCTGCCCGTGGAATGCCCCTACCTTCTGTTCCATTGCCCGATCCTCAACCTCCTGGTGTTACCCCTGTTCAAGTTTCATCGGCCACTGCTGTGCCATCTACTCATGGAAATCATCTTACTGGAAATTCGTTGATCCAGACAGACTTCAATCATCCTGAACTTGGTATGCCGTATGCTGTTAAATTGTTATCTTTATATCATGGTAAAGCTATTTGTACTTCAGTGCTTACACGTGCCTAAACTTCTGTTCTTCATTTATTGTTTAATCATTTAACAGATGCCCAGAAACACGCTCAAGGTATGGGCCAATCTGAGAGTATTTCTTTAAGTAAGCACTCGGAGAATTGGACTGCCCACAAGACTGAGGCAGGAATAATGTACTACTATAATGCCTTGACAGGAGAATCTACTTATGAAAAGCCTTCTGGATTTAAAGGAGAGGTATTTTCCCGGAGGCTTTCTATAGTTTCAAATGCGCATAAGTTTCGTTTTGTCTACTTGTTCGTTACTTATAAATCTCTCTCCCTCTCTTCCACCCTCCACCCTCCGCTTTAGCATCACACCATCGGTACACACACACACACATTAATTTTGTTGTTATTTGGTTTCACCAGGTTCATTATCAATTCTATTTCAGCTTGAAGCTTTTGTGGAATATGGGATGAGTAACTGGCTGAAATGAATAATTGTTGACATTGTGGCTTATTATCGAACTTTATGATGCTTTTCTGTAGGAATGGCATGACTGTATTATGGCTTTCTTATTACCTTTTTATAGCATTAAGGTTTTTCAATATATTCAATTTTGTGCATCTCATTCATTAATGTGTGTATATACATGTATAATAATTTTGATGTAATTGAATTTGTTGCAGCCTGACAATCTCATGGTGCAACCAACATCTGTTTCAATGTAAGTATCTTTAATAAACCATGATGGGAATGCGATTGTTTTTCTTTTTATATGAAGCTAAAACATTTTACTTATTTTATTAGTTACTTCTACAACAATTGTAACTATGTGATTTGCGGCCAGTTTGGAGATTTTTGTTTTGTAATATGACTAATTTTCTGGGCGGCATTATTACTTGTAAGTATCATATATAAACTTGTCAGCACTGGCCTATGATGGTTTATTTATGTTTTGGCGACATTCATTAAAATTAGATAAGGTTTTTGTAATGGATAATTTATATGTCATGTATAATGCTTTGGTTGGTGCTTCCACCTGCTTGCAATAAACGAATTCTTGATTGCTTATATGTAAATACTTGGGGAATAGGAACCAATATTTTGTTTCTCTTTAGGAGGCATTCTTGTTTTGTGGTTGGATCCTGTCTGCCGATGAGGTTATAAACCATATGTTTATTCATTGCTTTGGCAAAGATGAATATAAACCATATGTTTATTCATTACTTTGCCCTTAATTGTTAGGACCACTTACCTGAGTCTGTTTGGCATCGCTGGATGCAGTCCCTGGTTTATTAATTTCAATTTAATATATTTTTATTCATCCTTGCAGTTTTATGGGTGTTCTCCCCTTCATCTATGCTAGTTCTTCATTTTGGCATTGACATAACTGTTGGGCTAATTTTGTTTCTTCCTAGATGTTGGCTTTTAGTAGTCCTAACAAATATCATTTTCCCCCAAACTTTGTGGGTTGGGCTACACTTCTTAGCTTCTGAACATGCCAAATAATGGTTTTCTATCTACTAAATGTTCTCATATTCTATTGTCTGTAGGTCAAACCTGTCCGGTACGGATTGGGTTTTGGTTACTATGGGTGATGGTAAAAAATATTACTACAACAACAAGACAAAGGTTTGATTTTCTTTTTCTCTTCTAAATTCCCCCCCAGCTTTCCTATATGTCCGGAAGTTTTCTTGTTAGAAATAAATTTTTGGATACATATCTCGTGTTGTTATCACCTTGATATCATGAGAAAATGGTCTACTGCTGTTAGTTCTCAAAAGCTTTTCTCTATGTTGAAGGACTTAACCACCAATTTTGTATCATATTCTTTTGTCAGGAGTCTTTTGGACATATTAAGCATATATTTCTTTGTTTATGTGATTGTTATCGAGTATATATATATATATATATATATATATATATATATATATATTTGTAAAGAATTGATTTGGTGCTTATATGAGTCCATTAAAAGCATAGAACGTAATATGTATTATTTCCACGAAGTAACAAGAAAAAGAAGCAGGATGTGTATCTGCATGTATTCTAGTATTTTTTTGAAGAGAATTGAAGATGTTAATACGATCCCATTAAAAACATAGAAAGTAATATTTATTGTTTCCACAAAGTAACTAGGAAAAGTAGCAACGTGTGTATCTGCTGTCATTTACTACATGAGGTAGGCTGGGGCTCAGAAGTGGATAGATTTCTCAGAGGATATATCTGCTGCCTGATGGTCCATTTACCATTAGACATTGTCTATGTAAACTTATTGGATGAAAAATGAACTTCAAAATCATATTCCCGATTCCTGTACTTCAAATGTTGTGAAACGTAAGTCTCTTGTACTGAGTTAGCTCAATGGTAAATTCTAGCCGTGGACCTAATTTTCATCTTTCAGTTGTGCCAACCTATCTTTCTCTCTCTGAATCAGATAAGCAGTTGGCAGATCCCAAATGAAGTAACTGAATTGAGGCAGCAGAATGATGAAAAAACAAAAGAACATTCAGCTCCTTTGCCAAATAATAATGCGTTGACTGAACCAGGATCTTCCCCTATCAGTATGAATACTCCTGCCATCAGCACAGGAGGTCGTGAAGCCATGCCTCTTAGAACTGTAGGAGTTTCAGGGCCATCTTCTGCCCTGGATTTGATCAAGAAAAAATTGCAAGAGTCTGGAACTCCTGTTGCTTCCTCGCCTATTTCAGTTCCAACAATAGCTCAATCAGATGTGAATCTGCCGAGAGATGCTGATGCTGCAGTTAAGGCACTGCAGACTGAGAACAGCAAGGATAAGCCGAAAGATGCTAATGGTGATGGAAATGTATCCGACTCCTCCTCGGACTCTGAGGATATAGACAGTGGACCAACTAATGAGCAGTTAATCATTCAGTTTAAGGTATAATCTAACTTCCCCTTTATTGTGGATCAATATCATAATCTTTTTGACAGTTTGATAATACTAGATAGGAGTGTTTTTCATTTTTTTGTTGTTATCTTCTCTTGCTAGTATTCTGAATATCATGTTCATTATATATTTGAGTCTTTCCTATGCATAGTGATCTTGGGTGGGCTAGCCTCTGTGATGTAAATGCATTAATTTCATACCCATAATAAATAATACGTGGCTGCGGATCAGTCAGCCAAGCTTGCTGCTCCATTCATGGAGCTGAAAAAAGGGGGCAAATCATACTGCTCCCCTTCATGTTGCCAACATCTAGTGGAAAGCAGGCCTGGCAGTCGATTGGTCAGTGTATTCACAGTATATTCTCAAATCATTGGTCATGGTCTTGATTTGTACGTTCTTCCTGAAGTTTCCATCATATATTTTCATGCAATCTTCAGTTTGAGGAATTTCTGTCCTTTGCAACCTTAACTGTTGTGGTGGAAACATCTCATTATGATGTAATTGTAGGAAATGCTTAAGGAGCGGGGAGTGGCACCATTCTCTAAATGGGACAAGGAATTGCCGAAGATAGTTTTTGATCCCCGTTTTAAGGTTTGTTGAGTATAAAGATTTGAATTACTTTGTTCGGGAATAAGGGTCTGCTACCAATGGTACCCCTTGATACAGGTTTGTTTGATTTTGTTTGCCCATGTTAGACTACTTCCATACATTTGAATTCTTGGTTGACTCATGACTTTCTCCTGTTATGGCTTCCAACGAGTTTGTTCTTCTGTATTTTTTGTCTCGTTATAATGATGAAAAAAAACTTTCTACTTTTTTTAAACATACTTGCGTCTATCTATCAATGCAACATTTGTAATCCTCTCTTTTTTTTTTCCTCCAGATTAGAACTGTTCTTTCTGTTTGAGATTTTATTATGAGAAGCCCTTTTTTTTAAAAAAAAAAAAGAACAACGGACCTACTTTTTTCATTGAACTAATGAAAAGAGGCTAGTACTCGATGTTACAAACTCCTAAAGGAGTGAACAAAAAGAAAAGCTAATTACAAAGCAAAAGAGAAACAGAAAATGAATACAGAGGAAATATGAAAGTATTCCTATTCAAAATTGATATCCCAACATGATGAGATAAAGAACACAAAAGAGATGCTTTGAGATGAGCTGATTCAAAAATGCACTAACCATGAGCAATATTTATTACCTTTTAATTGTTTCCTGCTATAATTAAGAAATCAATGCCTCAACTGCATTGACCCATTATAAGTGAGGCCGAGAGGGCAATGGAGACCCAATAAAATCTGCAAAATGTCATTGGCCACTGTTGAAGAGAAAACCCATTGTGTTAGCGTTTTGCAATTTATGTGCTGGATCACCCACTATGTTTATTACGAGAAACTCGTTTTTATATATAAAGAGCATGTTTGTGTTATGCACTTTGTGTGCTGGATTACTGCTATTATGTTTTGAGAAGTTTTTATTCAATGACAGGCTATTCCTAGTTATTCAGCTAGGAGGTCCTTGTTTGAACACTTTGTTAAGACCCGTGCTGAGGAGGAACGTAAGGAGAAAAGAGCTGCTCAGAAGGCTGCAATAGAGGGATTTAAACAGTTACTGGATAGTGCATCTGAGGTTATATCCCTTTCCACATTGATTATCTGGTCTAAGGTTGCTATTTTTGTAATCGAGCCTTTTGAATCAACACAGTATTAAGATGGATGAGTTGAAAATCTCTTGAGCGAACTGTAATTTTTTATTTTTTTTTTGGTCAACCTAATTTGTTTCCAATATCAGATTATAAAATCCCTCTGAATAGAGTCAAGTATGTCCTTAATTTTAAGTACTAACTACTGTGTAATTATTTATTTTTAGGATATTGATCACACAACTAGTTATCAAACATTCAAAAAGAAATGGGGCAATGACCCGCGGTTTGAAGCTTTGGATCGTAAGGATCGGGAGAATTTATTGAGCGAAAGGTGCCATTTAATGAGTAGCTATAACATTTTTCTTGTCCAGTACTTTATAGCTCTTTTTTCGTGCATTCTTCTTGATTTTTTAATGTCATAGTTCACTCCTCTAGCTGGTGAAGTTGATTAATATGATTGGCAATTGTCCTGTCGGGTGAAATACGGCTTTGTAAGGTGGTATTTTGATGCCAAAGTTGACTATTGAAATTTCAATAGAGAAAATACATGCTAAATCACATACAGACATCTTAATTCTTTGCATCTCATTGCCAAACATCTTACCCGCTCTGACTTCGATTAAATGTCCCCCTTAAATTGCAAATTACAAGGTTATTTGATCTGAGATATTTAAGGGTGGAGGGAGACTCGAAATTTTTCATATCCTTCTTTGAACTTTTTGTGCATGATTTAATCTTTCCTTTCCCCTTAATTAACAAGAACTTTGGCCCCTTAATTATGAAGGCATGCACCACAGTCATGACGGTACATGTCCATCAATTTCTATGCCATGAAAAAAATATACTATTTGGCCTATTATGTGTGCATACACGTAGACCATATTGTTGGAAAAGTTTTCACTGTAGTCGTCTTTTTTGTTTGTCTCTAAACAACACGAACAATAGTTTATCATTTATATTTAAAATTGTGAAGTCAGGCTTTCAGATGTTAAATAGGGTTGGTTTATCCTAGAAATAACTTCATTGCAGTTTATCTTTTGTAAAAGATCTATACTTAATGTGCCTCCTTTTTAATTTAACATAGATTGACTGTGAGGGCCAACAAATGTTGGATCATACTTATATTTTTTTCTGCAAATTGGAACTTTGGCCCTTTTACATGTTATATTAGGAGCTTTTATTTTTAAAGCCCCACATTGCCATTTACTCCTGTTTTTGTTATGCCTTGTGATCACGCCTTTTGGAATTTGAAATTTGGTTGCGTCATTTCTTCGATATGTCTGTCCTCTTTTGATATGGTCTTACGCTAGGTGGATAGTTATTCAAATGTAGTATAAACAGTTTTGTACACAGAAAGTGCTTACTATTGATAACCCCTGAAAAAGAAACTTGAGTCAACAAGGTAGTAGGCTAGCAATCAGATTTATGTTTGATCTGCCCTTTAACTTTAACTTATTATGTTGAGTTTTAGCTGGATGATACCTCAATATAACTTGTAGGGTCCTTTGTCTGAAGAAGGCTGCCGTTGAAAAGGCTCAAGCTTTATGGGCTGCTTCCACCACGAGTTTCAAGTCCTTGCTGCAGGAGAGAGGAGATATCAACGTCAATTCCCGTTGGTTGAGGGTGGGTGCACCATGCTGAATTGGTAGTTCATTTTCTGGAGAATATATGATTATCTATCCTACATGTCAATGGTTCTTTTTTTCCTTCTCTTTACAAAAGGAAATTTGTTGAACTCAGGTGGCTAAATAATGATTTGGTTAAGGAGGTACACAACAGACTTCCCTTAATATAATGGACATTAATAATGTTGAAAATAGTACATTAGTGTTTAGTAGGTGGCTCTCAACAGCTCTTCACCAGTCCTTGGGGAAGATTAGTATCAGTAAAACTTGAGCAAATTTGCAAAGGCTGGACAGTAGCATTTCATATGATATCTTTGATGGGGTTTGAGGCAATAGAGATCTTTTTATTCTATTTTGTGTGTTACAGGAGTGATTTCTGAAGGGCCCTATGGGTTTTATTTATTTTTACTTTTTTGGATACAAACTCTTTTAGTTTTTTGATCTTTATGTCTTGCTCATGTTTTCTGATTGTTGAGAGAAAGAACCTGAAAAATTCATAGAATTTATTAATTTTCAACCATTCTGGACCGGTTCCAGGACTTATAAACTTGATGAAAGATATTGTGTAATTCTTTTTCGATTCAATCATTCAGAGTAAGCGAAGTTATTGATCTTTTCATTTCTTGCTCTTCTCGTTTGTAGTAAATTGTAACGAGTGTGAAATGCTACACTTTGGACTACAACGTTACACTATTTTGAAACATACATGTAACTATTTCCCTCTCTTCCCCTTTCTGACATGCTATTATAGGTAAAAGATAGTCTACGGGATGACCCAAGATACAGATCTGTTAAGCATGAGGACCGTGAGATGTTGTTCAACGAGTACATATCTGAACTTAAGGCTGTTGAGGAAGAAAAGCAGCGTGAGTCAAAAGCTAAAAAGGAGGAGCAGGTGAGCTTATCTGAAATTCCAAATGCCTTGTTGCAGGAACCTGCTTTTATCATAGTTAAGTTGTATGTTAGGCTATCTCGGTTAGTTATTTGGGAAAGAGGCAAGGTGAGGTGACAGGTGCTGCATTGTAGTCTCAGGTAGTTAAATCTAAGAGGAGCTTTTCAAGCCGTGGATCATCCTATCAAAATATTGCTTTCCTGTTTGAATACGTGGACCATGGATCTGTCTCGGTTTTTGTTCTATAAAAATTTATTTAAAAAATTTATTAGGGGTAATCAAGGTTCACAAAAAAGAAGCTTCAATTACCTAACTTTTTGGGATTCAAGTAACTATTCCCATTGAAGATAAGGATAGCAAAAAGAGCTCCCTTGAGGTGATTCAACAACAGCCTGGCTTCTTTTAAGTGTCTGTAGTTCTGATAAAGGGATGAAGAAATCCCTTTCTTCCACGAATGTATTGATATCATCCGTAGTGGAATCCATTTATTACTCCCCAAGAATAAAAAGAGCTAGTGATCTATGTAAAGAGATGAAATTATAGATCATCTTCTTTTGGATGGAGCCGGCTGGGCTTGAAGACATTCCCATTCTCCTCTCAATTGTTCTTGCAGGATGCCCCTTTAAAACGGAGAAAAAAATCTTATGGTTGAACTTCATTTGGGTTTCCATTTGGAGTTTGTGGCTTGAGGGGAAGAATTTCATCTTTTCAGATAAGAAAAAATGCATCAAAGTAACATATAGTTTTATAGATTCTACTTCCTTTTTATCTTTGTGCTAGAGTAAATATGCTCCTCTTTTTCTAACTACAGCTTGTCTATTCTCATTGCTCACTGGAGTACCTTTTGTAATTGCTTGTTGTTTGGAATTTTCTATACATCTCATCACATCAATAAAATAGTTTCTGTTTCCTAAAAAAGTATCAATCATCCTCATAACCAAGCCTATAAAAAGGTGAACTCACTTTTGCAGCAAGTTCTCTATGATTTGTTGTGCTCCTAAAGAAACTATCTTTGCTCTCCACGAAAGGATCGGGTTGGCGGCTAGAAAAGAAACAAGAAAAAAAAGAAAAGCAAGCTTGAGCTGGAAGAATTTCTCTAAAGCCCCTCTCTGGTCCTTGTAACTGGAGCAGAACAACAGTATTTTGGGTGATGATTATGGTTTTTATGTTATTTTGGGAAGTGTACAGTATATAGCTTCTTTTTTCAACGAGAAACAACTACAGTATTTAGCTTCTAGTTATTTTGGATAAGACGTGCTTCTTTAGTCTCTAAACTAGGGAGATTTTTAATGCTTATGTGTTTTGGCTTATCCACTGTAACTCCGTTTTGCCTTTGCTTTTCCAAAAATAATTATAAATAAAAGAATATAGACAAAAACCACCAAGATCAAATAGTGCCCTGTTTGGTGCATAAAACTTAACTTCCGCTAATAATAGTTGTGTGCCACCTAACGCATATCACAGTTGTTTTGTTACATAAGATTAGAATCCTACCTAAGTGTTCGACAATAGATGGAAGCCATGCTGAATACTTCTACTTATTTTCTAATGCTTATTTCAGGAGAAACTGAAGGAAAGGGAGAGAGAATGGCGGAAACGGAAGGAAAGAGAAGAGCAAGAAATGGAAAGGGTGCGCCTAAAAGTACGGAAGAAAGAGGCTGTTGCATCTTTTCAAGCATTGCTTGTTGAGTCGATCAAAGACCCTCAGGTATATCTTTTGTACCATGATTCTGTGGCTAGTTTTGGAAAAAATGAAGAAAGGAAAGAGAGATAGTGGGGAGGGTAATGGACAAAGAAAAATGGAGCCTGGTTTGTCCGATCAGTCCAAATGTTGTAGCAGTTGAGGTGTCTTTTGCTGGTGAATTTAAAAGCATACAATAATTTAAATTTTAACTGAAAATTGTCTGTCATGAAGTTAACCATAAGTCATTAGAAATTTATTTATTTTTATTAAACATCTATTCAATCCCTCCCTACTAATGAACAGTAGGCAAATACGATATGGTTTGGTTGATCCTGTAGTGTTAACTAGCACCTTTTTGTTTTGTTTTTTGCTTAGGCCTCTTGGTCTGAGTCAAAAGTTAAATTGGAGAAGGATCCACAAGGGCGTGCATCCAATCCTGATTTAGATTCATCTGACACAGAAAAGCTATTCAGAGAACATGTAAAGATGCTGCAAGAGGTAATTCTACAACTCGCTGATCTTTGATTTTTCATCCTTTTCACTATCATTTGCAGATCCACGCTCAATATTTTTTCATAAAGTATATAATTTGAATTTTAGCTGGTATTATATCAAATCATGAAGTTTAGATGGCTTTTCGAGGCTTTTAATATAACTGGAGGCAATCCAATATTTGGTTCTCTCATCTTTTTTCCGCATCTTTGACTCTCTACTAGGATTCAAATGTTATGAAAACTATGTGCTCATCTTAGTTCTCTATCCTTCTGGTTATCGCATTATCTGTCTTCCATTGATGGGTTTTGTTAGGAATCATGACTCTCTACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTTACTTATAAACCTATGATCATTTCCTAAATTATCCAGCGTGGGACTCACTCTCAACAATCCTCAACAATGCTCCCCTTGAACAAAGTACACTATAAGCCTCCCCTGAGGTACTCTCGAACAGCCTCCTCTTAGCCCTCGAACAAAGTACACCCTTTGTTCGACACTTGAGTCACTTTTTGACTACACCTTCGAGGCTCACAATCTTTGTTCGATATTTGAGGATTCTATTGTCATGGCTAAGTTTACGGCATTGTTCTGATACTATGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTAGGCTTTCCCAAAAGGCCTCGTACCAATGGAGATGTATTCCTTTACTTATAAACCTATGATCATTTCCTAAATTAGCCAACATGGGACTCACTCCCAACAATCCTCTAACAGGTTTTACATTTACATTTCTTTGCTTCTCATTTTAATCAGAAGCTTGTAATGATACGTTCAGTCTCAATAGAATTTAGGACCATATTTATGACTTTGTTATAATCTTCTCTCTACTAGGATTCATGTTATGAATACTATGTGCTTGTCTTATTTCTATCCCAAATTTCTGGTTATCGTAATATCTGTCTATCACCAAAGCAAATGTACTTCGAAAAAAAATTGGGAAGCAATTCATTGTCGATATTTCTAGTCAATTTCGTAATGCTTCAACAAAGTGAATGGGAAAGACTTAACATGTATGACTTGATAATTGTTTTCCCCGTATTTAACATGAATTGAGACTTTAAGAGTTGTTCCCTTCAGTGGGTTGGTTACTCACTTGTCTTTTCACTGCATTACAACTGGAAAGTGAAAATTTATGGCTGTTGCAGTTTGCTAACCGCATTTCTGTCTCTCATTTCTTTTCCATTTTTTCTGCAGCGGTGTGCAAACGAGTTTAGAACTCTATTATCTGAAGCATTTACAGCCGAGGTAGTTTCTCAGGTATCTGAAGATGGAAAAACAGTTCTTAATTCATGGACAATGGCCAAACGAACATTGAAACCCGATCCCAGATACAGTAAACTCCCAAGGAAGGAAAGGGAAGCACTTTGGCGTCGATATGCCGACGACACATTGCGGAAGCAGAAGTCAGCAAATGATCACAAGGTAGAAAAACATAGCAATTCAAAGAGTAGATCAACCAATGTCGCTGGAAAATTACCTTCTAAACCAAGAATCCACGAGTGAAGAAAGAAGTCTCTCGTTCGAATTTTTGGTCTACAGGCAGACGTCTCTCCCTCCCATCACGACGATTCCTTCAGTACTAATTTAATTAGTTTTTTCTAATGTACCTTTTCGGTGTTTCGTTAGCCTACTAAAAAACCTATACATGTACTGCCGAAGGAACTGGTTCAGCAATTAAAATAGTTTAGAGTACAATTCCTTCC

mRNA sequence

ATAGTTAAATGCACTACGCTGGAATTCGGACGTTGGACTTGGGATTGGAAGGCGGAAGCGAAGCACTCCCGCTGCGTCACACACCAATCGGAGATCGGAACCCTAACTTCCGCCTGTTAACTTTCCGGCACCTCATCCACATGTGATCCCCGGCCCCGGCCTCCTCTCCTCTCCCCATCCTGATTCGCTCTTTTTTCATTTCCTCCCTCTCGTCTGCATCGCCGGTGCGGTAGGGTTTCCCCACTTGTTTCTGCTTAGCTACGTTTCATTTCACCATGTCTTCAGCATCAACCGTCTCCCAATCCATGTCACTACCTGCTCCGCCTACTTCTAATTCTGCAGCTAATGGATCTTCAATTCCCAATTTGATTCCGGCCACTTCACCAGTTCCTCCTGCCCAATCTTTCCATATTCACCAACTTGCGCCTGGAACTCCGATGGTTCCTGGTCCACCGGGAATGTCACCGTCTATGCCAGTTATGTTTCCACCTAGCGATTCATCTGCTTCTTCCACTATCCCAGGACCCAATATGCATGCAGCTCCTAACTCAATAAATACTTCTGTTCGTCCACAAATATGTGGTTCCTATCCTTCTCTAGCTCCCGTTGTTTCTCCACCTCATGCGATCTGGTTTCAGCCTCCTCAGTTGGGAGGCATGCCCAGACCTCCCTTTCTGCCGTACCCTGCTTCTTATCATGGCCCTCTTCCTTTTCCTGCCCGTGGAATGCCCCTACCTTCTGTTCCATTGCCCGATCCTCAACCTCCTGGTGTTACCCCTGTTCAAGTTTCATCGGCCACTGCTGTGCCATCTACTCATGGAAATCATCTTACTGGAAATTCGTTGATCCAGACAGACTTCAATCATCCTGAACTTGATGCCCAGAAACACGCTCAAGGTATGGGCCAATCTGAGAGTATTTCTTTAAGTAAGCACTCGGAGAATTGGACTGCCCACAAGACTGAGGCAGGAATAATGTACTACTATAATGCCTTGACAGGAGAATCTACTTATGAAAAGCCTTCTGGATTTAAAGGAGAGCCTGACAATCTCATGGTGCAACCAACATCTGTTTCAATGTCAAACCTGTCCGGTACGGATTGGGTTTTGGTTACTATGGGTGATGGTAAAAAATATTACTACAACAACAAGACAAAGATAAGCAGTTGGCAGATCCCAAATGAAGTAACTGAATTGAGGCAGCAGAATGATGAAAAAACAAAAGAACATTCAGCTCCTTTGCCAAATAATAATGCGTTGACTGAACCAGGATCTTCCCCTATCAGTATGAATACTCCTGCCATCAGCACAGGAGGTCGTGAAGCCATGCCTCTTAGAACTGTAGGAGTTTCAGGGCCATCTTCTGCCCTGGATTTGATCAAGAAAAAATTGCAAGAGTCTGGAACTCCTGTTGCTTCCTCGCCTATTTCAGTTCCAACAATAGCTCAATCAGATGTGAATCTGCCGAGAGATGCTGATGCTGCAGTTAAGGCACTGCAGACTGAGAACAGCAAGGATAAGCCGAAAGATGCTAATGGTGATGGAAATGTATCCGACTCCTCCTCGGACTCTGAGGATATAGACAGTGGACCAACTAATGAGCAGTTAATCATTCAGTTTAAGGAAATGCTTAAGGAGCGGGGAGTGGCACCATTCTCTAAATGGGACAAGGAATTGCCGAAGATAGTTTTTGATCCCCGTTTTAAGGTTTGTTGAGTATAAAGATTTGAATTACTTTGTTCGGGAATAAGGGTCTGCTACCAATGGTACCCCTTGATACAGGCTATTCCTAGTTATTCAGCTAGGAGGTCCTTGTTTGAACACTTTGTTAAGACCCGTGCTGAGGAGGAACGTAAGGAGAAAAGAGCTGCTCAGAAGGCTGCAATAGAGGGATTTAAACAGTTACTGGATAGTGCATCTGAGGATATTGATCACACAACTAGTTATCAAACATTCAAAAAGAAATGGGGCAATGACCCGCGGTTTGAAGCTTTGGATCGTAAGGATCGGGAGAATTTATTGAGCGAAAGGGTCCTTTGTCTGAAGAAGGCTGCCGTTGAAAAGGCTCAAGCTTTATGGGCTGCTTCCACCACGAGTTTCAAGTCCTTGCTGCAGGAGAGAGGAGATATCAACGTCAATTCCCGTTGGTTGAGGGTAAAAGATAGTCTACGGGATGACCCAAGATACAGATCTGTTAAGCATGAGGACCGTGAGATGTTGTTCAACGAGTACATATCTGAACTTAAGGCTGTTGAGGAAGAAAAGCAGCGTGAGTCAAAAGCTAAAAAGGAGGAGCAGGAGAAACTGAAGGAAAGGGAGAGAGAATGGCGGAAACGGAAGGAAAGAGAAGAGCAAGAAATGGAAAGGGTGCGCCTAAAAGTACGGAAGAAAGAGGCTGTTGCATCTTTTCAAGCATTGCTTGTTGAGTCGATCAAAGACCCTCAGGCCTCTTGGTCTGAGTCAAAAGTTAAATTGGAGAAGGATCCACAAGGGCGTGCATCCAATCCTGATTTAGATTCATCTGACACAGAAAAGCTATTCAGAGAACATGTAAAGATGCTGCAAGAGCGGTGTGCAAACGAGTTTAGAACTCTATTATCTGAAGCATTTACAGCCGAGGTAGTTTCTCAGGTATCTGAAGATGGAAAAACAGTTCTTAATTCATGGACAATGGCCAAACGAACATTGAAACCCGATCCCAGATACAGTAAACTCCCAAGGAAGGAAAGGGAAGCACTTTGGCGTCGATATGCCGACGACACATTGCGGAAGCAGAAGTCAGCAAATGATCACAAGGTAGAAAAACATAGCAATTCAAAGAGTAGATCAACCAATGTCGCTGGAAAATTACCTTCTAAACCAAGAATCCACGAGTGAAGAAAGAAGTCTCTCGTTCGAATTTTTGGTCTACAGGCAGACGTCTCTCCCTCCCATCACGACGATTCCTTCAGTACTAATTTAATTAGTTTTTTCTAATGTACCTTTTCGGTGTTTCGTTAGCCTACTAAAAAACCTATACATGTACTGCCGAAGGAACTGGTTCAGCAATTAAAATAGTTTAGAGTACAATTCCTTCC

Coding sequence (CDS)

ATGTCTTCAGCATCAACCGTCTCCCAATCCATGTCACTACCTGCTCCGCCTACTTCTAATTCTGCAGCTAATGGATCTTCAATTCCCAATTTGATTCCGGCCACTTCACCAGTTCCTCCTGCCCAATCTTTCCATATTCACCAACTTGCGCCTGGAACTCCGATGGTTCCTGGTCCACCGGGAATGTCACCGTCTATGCCAGTTATGTTTCCACCTAGCGATTCATCTGCTTCTTCCACTATCCCAGGACCCAATATGCATGCAGCTCCTAACTCAATAAATACTTCTGTTCGTCCACAAATATGTGGTTCCTATCCTTCTCTAGCTCCCGTTGTTTCTCCACCTCATGCGATCTGGTTTCAGCCTCCTCAGTTGGGAGGCATGCCCAGACCTCCCTTTCTGCCGTACCCTGCTTCTTATCATGGCCCTCTTCCTTTTCCTGCCCGTGGAATGCCCCTACCTTCTGTTCCATTGCCCGATCCTCAACCTCCTGGTGTTACCCCTGTTCAAGTTTCATCGGCCACTGCTGTGCCATCTACTCATGGAAATCATCTTACTGGAAATTCGTTGATCCAGACAGACTTCAATCATCCTGAACTTGATGCCCAGAAACACGCTCAAGGTATGGGCCAATCTGAGAGTATTTCTTTAAGTAAGCACTCGGAGAATTGGACTGCCCACAAGACTGAGGCAGGAATAATGTACTACTATAATGCCTTGACAGGAGAATCTACTTATGAAAAGCCTTCTGGATTTAAAGGAGAGCCTGACAATCTCATGGTGCAACCAACATCTGTTTCAATGTCAAACCTGTCCGGTACGGATTGGGTTTTGGTTACTATGGGTGATGGTAAAAAATATTACTACAACAACAAGACAAAGATAAGCAGTTGGCAGATCCCAAATGAAGTAACTGAATTGAGGCAGCAGAATGATGAAAAAACAAAAGAACATTCAGCTCCTTTGCCAAATAATAATGCGTTGACTGAACCAGGATCTTCCCCTATCAGTATGAATACTCCTGCCATCAGCACAGGAGGTCGTGAAGCCATGCCTCTTAGAACTGTAGGAGTTTCAGGGCCATCTTCTGCCCTGGATTTGATCAAGAAAAAATTGCAAGAGTCTGGAACTCCTGTTGCTTCCTCGCCTATTTCAGTTCCAACAATAGCTCAATCAGATGTGAATCTGCCGAGAGATGCTGATGCTGCAGTTAAGGCACTGCAGACTGAGAACAGCAAGGATAAGCCGAAAGATGCTAATGGTGATGGAAATGTATCCGACTCCTCCTCGGACTCTGAGGATATAGACAGTGGACCAACTAATGAGCAGTTAATCATTCAGTTTAAGGAAATGCTTAAGGAGCGGGGAGTGGCACCATTCTCTAAATGGGACAAGGAATTGCCGAAGATAGTTTTTGATCCCCGTTTTAAGGTTTGTTGA

Protein sequence

MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPPGMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWFQPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNALTGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIPNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSGPSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDANGDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKVC

Homology

[Close]

BLAST of Carg18921 vs. NCBI nr
Match: KAG7013927.1 (Pre-mRNA-processing protein 40C [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 933.3 bits (2411), Expect = 8.2e-268
Identity = 479/479 (100.00%), Postives = 479/479 (100.00%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP
Sbjct: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60

Query: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120
           GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF
Sbjct: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120

Query: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180
           QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST
Sbjct: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180

Query: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240
           HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL
Sbjct: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240

Query: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300
           TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI
Sbjct: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300

Query: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360
           PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG
Sbjct: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360

Query: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420
           PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN
Sbjct: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420

Query: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKVC 480
           GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKVC
Sbjct: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKVC 479

[Close]

BLAST of Carg18921 vs. NCBI nr
Match: XP_022953473.1 (pre-mRNA-processing protein 40C [Cucurbita moschata] >XP_022953474.1 pre-mRNA-processing protein 40C [Cucurbita moschata])

HSP 1 Score: 926.4 bits (2393), Expect = 1.0e-265
Identity = 475/477 (99.58%), Postives = 477/477 (100.00%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP
Sbjct: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60

Query: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120
           GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF
Sbjct: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120

Query: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180
           QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST
Sbjct: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180

Query: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240
           HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL
Sbjct: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240

Query: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300
           TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI
Sbjct: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300

Query: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360
           PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAI+TGGREAMPLRTVGVSG
Sbjct: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAINTGGREAMPLRTVGVSG 360

Query: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420
           PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN
Sbjct: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420

Query: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 478
           GDGNVSDSSSDSED+DSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK
Sbjct: 421 GDGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 477

[Close]

BLAST of Carg18921 vs. NCBI nr
Match: KAG6575389.1 (Pre-mRNA-processing protein 40C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 926.4 bits (2393), Expect = 1.0e-265
Identity = 476/477 (99.79%), Postives = 476/477 (99.79%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP
Sbjct: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60

Query: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120
           GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF
Sbjct: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120

Query: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180
           QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST
Sbjct: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180

Query: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240
           HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL
Sbjct: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240

Query: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300
           TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI
Sbjct: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300

Query: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360
           PNEVTELRQQNDEKTKEHS PLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG
Sbjct: 301 PNEVTELRQQNDEKTKEHSTPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360

Query: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420
           PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN
Sbjct: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420

Query: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 478
           GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK
Sbjct: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 477

[Close]

BLAST of Carg18921 vs. NCBI nr
Match: XP_023547625.1 (pre-mRNA-processing protein 40C [Cucurbita pepo subsp. pepo] >XP_023547626.1 pre-mRNA-processing protein 40C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 921.8 bits (2381), Expect = 2.5e-264
Identity = 472/477 (98.95%), Postives = 475/477 (99.58%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP
Sbjct: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60

Query: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120
           GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF
Sbjct: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120

Query: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180
           QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPS+
Sbjct: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPSS 180

Query: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240
           HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL
Sbjct: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240

Query: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300
           TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI
Sbjct: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300

Query: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360
           PNEVTELRQQNDEKTKEHS PLPNNNALTEPGSSPISMNTPAI+TGGREAMPLRTVGVSG
Sbjct: 301 PNEVTELRQQNDEKTKEHSGPLPNNNALTEPGSSPISMNTPAINTGGREAMPLRTVGVSG 360

Query: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420
           PSSALDLIKKKLQESGTPVASSPIS PTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN
Sbjct: 361 PSSALDLIKKKLQESGTPVASSPISAPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420

Query: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 478
           GDGNVSDSSSDSED+DSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK
Sbjct: 421 GDGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 477

[Close]

BLAST of Carg18921 vs. NCBI nr
Match: XP_022992104.1 (pre-mRNA-processing protein 40C [Cucurbita maxima] >XP_022992105.1 pre-mRNA-processing protein 40C [Cucurbita maxima] >XP_022992106.1 pre-mRNA-processing protein 40C [Cucurbita maxima] >XP_022992107.1 pre-mRNA-processing protein 40C [Cucurbita maxima])

HSP 1 Score: 908.7 bits (2347), Expect = 2.2e-260
Identity = 467/477 (97.90%), Postives = 472/477 (98.95%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPAT PVPPAQSFHIHQLAPGTPMVPGPP
Sbjct: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATLPVPPAQSFHIHQLAPGTPMVPGPP 60

Query: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120
           GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF
Sbjct: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120

Query: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180
           QPPQLGGMPRPPFLPYPASYHGPLPFPARGM LPSVPLPDPQPPGVTPVQVSSATAVPST
Sbjct: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMHLPSVPLPDPQPPGVTPVQVSSATAVPST 180

Query: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240
           HG+HLTGNSLIQTDFNHPELDA KHAQGMGQSESISLSKHSENWTAHKTE+GIMYYYNAL
Sbjct: 181 HGSHLTGNSLIQTDFNHPELDAHKHAQGMGQSESISLSKHSENWTAHKTESGIMYYYNAL 240

Query: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300
           TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI
Sbjct: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300

Query: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360
           PNEVTELRQQNDEKTKEHSAPLPNN+ALTEPGSSPISMNTPAI+TGGREAMPLRTVGVSG
Sbjct: 301 PNEVTELRQQNDEKTKEHSAPLPNNHALTEPGSSPISMNTPAINTGGREAMPLRTVGVSG 360

Query: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420
           PSSALDLIKKKLQESGTPVASSPIS PTIAQSDVNLPRDADAAVKALQTENSK KPKDAN
Sbjct: 361 PSSALDLIKKKLQESGTPVASSPISAPTIAQSDVNLPRDADAAVKALQTENSKVKPKDAN 420

Query: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 478
           GDGNVSDSSSDSED+DSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK
Sbjct: 421 GDGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 477

[Close]

BLAST of Carg18921 vs. ExPASy Swiss-Prot
Match: Q9LT25 (Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana OX=3702 GN=PRP40C PE=1 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 3.3e-86
Identity = 216/480 (45.00%), Postives = 282/480 (58.75%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAAN--GSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPG 60
           MS AST   S S+P   T+    N   SS  N IP  SP+     F       G P    
Sbjct: 49  MSIASTGFVSQSVPYSVTAQWGTNAAASSNVNPIPQASPMLANAPF-------GRPGTLA 108

Query: 61  PPGMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAI 120
           PPG+  S P  FP   S+  ST P P M A P  +N  + P +   YP    +   P  +
Sbjct: 109 PPGLMTSPPA-FP--GSNPFSTTPRPGMSAGPAQMNPGIHPHM---YPPYHSLPGTPQGM 168

Query: 121 WFQPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPV-QVSSATAV 180
           W QPP +GG+PR PFL +P ++ G  PFP RG+  P++P     P G +P+  V +  A+
Sbjct: 169 WLQPPSMGGIPRAPFLSHPTTFPGSYPFPVRGIS-PNLPYSGSHPLGASPMGSVGNVHAL 228

Query: 181 PSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYY 240
           P    +   G    +       +D +  +Q +G           + WTAHK+EAG++YYY
Sbjct: 229 PGRQPDISPGRKTEELS----GIDDRAGSQLVG--------NRLDAWTAHKSEAGVLYYY 288

Query: 241 NALTGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISS 300
           N++TG+STYEKP GF GEPD + VQP  VSM +L GTDW LV+  DGKKYYYNNKTK+SS
Sbjct: 289 NSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGKKYYYNNKTKVSS 348

Query: 301 WQIPNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVG 360
           WQIP EV +  ++ +E+  E  A +P+ + LTE GS   S++ PAIS GGR+A  L+T  
Sbjct: 349 WQIPAEVKDFGKKLEERAMESVASVPSAD-LTEKGSDLTSLSAPAISNGGRDAASLKTTN 408

Query: 361 VSGPSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPK 420
               SSALDL+KKKL +SG PV+S+         S+ N  +  +      ++ NS  K K
Sbjct: 409 FG--SSALDLVKKKLHDSGMPVSST-------ITSEANSGKTTEVTPSG-ESGNSTGKVK 468

Query: 421 DANGDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 478
           DA G G +SDSSSDSED DSGP+ E+   QFKEMLKERG+APFSKW+KELPKI+FDPRFK
Sbjct: 469 DAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFDPRFK 491

[Close]

BLAST of Carg18921 vs. ExPASy Swiss-Prot
Match: O75400 (Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens OX=9606 GN=PRPF40A PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-09
Identity = 90/403 (22.33%), Postives = 155/403 (38.46%), Query Frame = 0


Query: 126 GGMPRPPFLPYPASYHGPLPFPARGM-----PLPSVPLPDPQPP------GVTPVQVSSA 185
           G + R P + +P  ++ P+     G      P+P   +P   PP      G  P  +SS 
Sbjct: 48  GFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSS- 107

Query: 186 TAVPSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIM 245
             +P    +H++  S+       P L    ++  +      + S     WT HK+  G  
Sbjct: 108 -VMPGMMMSHMSQASM------QPALPPGVNSMDVAAG---TASGAKSMWTEHKSPDGRT 167

Query: 246 YYYNALTGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTK 305
           YYYN  T +ST+EKP   K   + L           LS   W       GK YYYN++TK
Sbjct: 168 YYYNTETKQSTWEKPDDLKTPAEQL-----------LSKCPWKEYKSDSGKPYYYNSQTK 227

Query: 306 ISSWQIPNEVTELR--------------------------QQNDEKTKEHSAPLPNNNAL 365
            S W  P E+ +L                            + +E T   +AP+P     
Sbjct: 228 ESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIP 287

Query: 366 TEPGSSPISMNTPA-ISTGGREAMPLRTVGVSGPSSALDLIKKKLQESGTPVASSPISVP 425
           T   +   +    A ++     A        +  +SA + +   +     P  +S ++  
Sbjct: 288 TTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEVTSIVATV 347

Query: 426 TIAQSDVNLPRDADA------AVKALQTENSKDKPKDANGDGNVSDSSSDSEDIDSGP-- 477
              ++ V +  +  A      A++    E S +  ++ +    V+D +   E+ +S P  
Sbjct: 348 VDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAK 407

[Close]

BLAST of Carg18921 vs. ExPASy Swiss-Prot
Match: Q8CGF7 (Transcription elongation regulator 1 OS=Mus musculus OX=10090 GN=Tcerg1 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 9.5e-09
Identity = 118/533 (22.14%), Postives = 196/533 (36.77%), Query Frame = 0


Query: 2   SSASTVSQSMSLPAPPTSNSA-ANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 61
           + A   +Q++  P P TS+ A A  +S P   P+++      +  + Q           P
Sbjct: 249 AQAQVQAQAVGAPTPTTSSPAPAVSTSTPTSTPSSTTATTTTATSVAQTVSTPTTQDQTP 308

Query: 62  G-----MSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPP 121
                  +P++ V  P   ++   T+P P+    P ++  SV PQ   + P+  PV+ PP
Sbjct: 309 SSAVSVATPTVSVSAPAPTATPVQTVPQPHPQTLPPAVPHSV-PQPAAAIPAFPPVMVPP 368

Query: 122 HAIWFQPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSS-- 181
             +                                 PLP +P+P    PGV  +Q+ S  
Sbjct: 369 FRV---------------------------------PLPGMPIP---LPGVAMMQIVSCP 428

Query: 182 -ATAVPSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAG 241
               V +T    L G +       HP++        +  + ++S       WT +KT  G
Sbjct: 429 YVKTVATTKTGVLPGMAPPIVPMIHPQVAIAASPATLAGATAVS------EWTEYKTADG 488

Query: 242 IMYYYNALTGESTYEKPSGFK--------------------------------------- 301
             YYYN  T EST+EKP   K                                       
Sbjct: 489 KTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEPLPMETEEEDPKEEPVKEIK 548

Query: 302 --------GEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIPNEVT 361
                    E +    +   V+ + + GT W +V  GD + ++YN  T++S W  P+++ 
Sbjct: 549 EEPKEEEMTEEEKAAQKAKPVATTPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLI 608

Query: 362 ELRQQNDEKTKE--HSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSGPSS 421
             R   D+  +E  H   L +   L  P  + +S+     S                  S
Sbjct: 609 G-RADVDKIIQEPPHKKGLEDMKKLRHPAPTMLSIQKWQFS-----------------MS 668

Query: 422 ALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDANGDG 477
           A+   ++ ++E                        + D  +KA + +   +K  D+  + 
Sbjct: 669 AIKEEQELMEE-----------------------MNEDEPIKAKKRKRDDNKDIDSEKEA 696

[Close]

BLAST of Carg18921 vs. ExPASy Swiss-Prot
Match: O14776 (Transcription elongation regulator 1 OS=Homo sapiens OX=9606 GN=TCERG1 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-08
Identity = 124/523 (23.71%), Postives = 192/523 (36.71%), Query Frame = 0


Query: 4   ASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPPGMS 63
           AST + S   PA  TS S++  SS  +    T+    AQ+         TP        +
Sbjct: 258 ASTPTTSSPAPAVSTSTSSSTPSSTTS--TTTTATSVAQTVSTPTTQDQTPS-SAVSVAT 317

Query: 64  PSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWFQPP 123
           P++ V  P   ++   T+P P+    P ++  SV PQ   + P+  PV+ PP  +     
Sbjct: 318 PTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSV-PQPTTAIPAFPPVMVPPFRV----- 377

Query: 124 QLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSS---ATAVPST 183
                                       PLP +P+P    PGV  +Q+ S      V +T
Sbjct: 378 ----------------------------PLPGMPIP---LPGVAMMQIVSCPYVKTVATT 437

Query: 184 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 243
               L G +       HP++        +  + ++S       WT +KT  G  YYYN  
Sbjct: 438 KTGVLPGMAPPIVPMIHPQVAIAASPATLAGATAVS------EWTEYKTADGKTYYYNNR 497

Query: 244 TGESTYEKPSGFK----------------------------------------------- 303
           T EST+EKP   K                                               
Sbjct: 498 TLESTWEKPQELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEEPKEEEM 557

Query: 304 GEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIPNEVTELRQQNDE 363
            E +    +   V+ + + GT W +V  GD + ++YN  T++S W  P+++   R   D+
Sbjct: 558 TEEEKAAQKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIG-RADVDK 617

Query: 364 KTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSGPSSALDLIKKKLQ 423
             +E                       P    G  E   LR      P+  +  I+K   
Sbjct: 618 IIQE-----------------------PPHKKGMEELKKLR-----HPTPTMLSIQK--- 677

Query: 424 ESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDANGDGNVSDSSSDSE 477
                 + S I        ++N     D  VKA + +   +K  D+  +  +      + 
Sbjct: 678 ---WQFSMSAIKEEQELMEEIN----EDEPVKAKKRKRDDNKDIDSEKEAAMEAEIKAAR 694

[Close]

BLAST of Carg18921 vs. ExPASy Swiss-Prot
Match: Q9R1C7 (Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=10090 GN=Prpf40a PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.0e-08
Identity = 89/400 (22.25%), Postives = 153/400 (38.25%), Query Frame = 0


Query: 126 GGMPRPPFLPYPASYHGPLPFPARGM-----PLPSVPLPDPQPP------GVTPVQVSSA 185
           G + R P + +P  ++ P+     G      P+P   +P   PP      G  P  +SS 
Sbjct: 48  GFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSV 107

Query: 186 -TAVPSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGI 245
            + +  +H +  +    +    N  ++ A             + S     WT HK+  G 
Sbjct: 108 MSGMMMSHMSQASMQPALPPGVNSMDVAAG------------AASGAKSMWTEHKSPDGR 167

Query: 246 MYYYNALTGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKT 305
            YYYN  T +ST+EKP   K   + L           LS   W       GK YYYN++T
Sbjct: 168 TYYYNTETKQSTWEKPDDLKTPAEQL-----------LSKCPWKEYKSDSGKPYYYNSQT 227

Query: 306 KISSWQIPNEVTELR--------------------------QQNDEKTKEHSAPLPNNNA 365
           K S W  P E+ +L                            + +E T   +AP+P    
Sbjct: 228 KESRWAKPKELEDLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEI 287

Query: 366 LTEPGSSPISMNTPAISTGGREAMPLRTVGVS-GPSSALDLIKKKLQESGTPVASSPI-S 425
            T   +   +    A+      A        S  P++ +  +    +   T + ++ + +
Sbjct: 288 PTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVATAVDN 347

Query: 426 VPTIAQSDVNLPRDAD-AAVKALQTENSKDKPKDANGDGNVSDSSSDSEDIDSGP----- 477
             T+  S     + A+  A++ L  + S +  ++      VSD +   E+ +S P     
Sbjct: 348 ENTVTVSTEEQAQLANTTAIQDLSGDISSNTGEEPAKQETVSDFTPKKEEEESQPAKKTY 407

[Close]

BLAST of Carg18921 vs. ExPASy TrEMBL
Match: A0A6J1GNF1 (pre-mRNA-processing protein 40C OS=Cucurbita moschata OX=3662 GN=LOC111456014 PE=4 SV=1)

HSP 1 Score: 926.4 bits (2393), Expect = 4.8e-266
Identity = 475/477 (99.58%), Postives = 477/477 (100.00%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP
Sbjct: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60

Query: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120
           GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF
Sbjct: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120

Query: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180
           QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST
Sbjct: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180

Query: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240
           HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL
Sbjct: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240

Query: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300
           TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI
Sbjct: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300

Query: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360
           PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAI+TGGREAMPLRTVGVSG
Sbjct: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAINTGGREAMPLRTVGVSG 360

Query: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420
           PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN
Sbjct: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420

Query: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 478
           GDGNVSDSSSDSED+DSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK
Sbjct: 421 GDGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 477

[Close]

BLAST of Carg18921 vs. ExPASy TrEMBL
Match: A0A6J1JUS6 (pre-mRNA-processing protein 40C OS=Cucurbita maxima OX=3661 GN=LOC111488550 PE=4 SV=1)

HSP 1 Score: 908.7 bits (2347), Expect = 1.0e-260
Identity = 467/477 (97.90%), Postives = 472/477 (98.95%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPAT PVPPAQSFHIHQLAPGTPMVPGPP
Sbjct: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATLPVPPAQSFHIHQLAPGTPMVPGPP 60

Query: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120
           GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF
Sbjct: 61  GMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAIWF 120

Query: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSSATAVPST 180
           QPPQLGGMPRPPFLPYPASYHGPLPFPARGM LPSVPLPDPQPPGVTPVQVSSATAVPST
Sbjct: 121 QPPQLGGMPRPPFLPYPASYHGPLPFPARGMHLPSVPLPDPQPPGVTPVQVSSATAVPST 180

Query: 181 HGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYYNAL 240
           HG+HLTGNSLIQTDFNHPELDA KHAQGMGQSESISLSKHSENWTAHKTE+GIMYYYNAL
Sbjct: 181 HGSHLTGNSLIQTDFNHPELDAHKHAQGMGQSESISLSKHSENWTAHKTESGIMYYYNAL 240

Query: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300
           TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI
Sbjct: 241 TGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQI 300

Query: 301 PNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVGVSG 360
           PNEVTELRQQNDEKTKEHSAPLPNN+ALTEPGSSPISMNTPAI+TGGREAMPLRTVGVSG
Sbjct: 301 PNEVTELRQQNDEKTKEHSAPLPNNHALTEPGSSPISMNTPAINTGGREAMPLRTVGVSG 360

Query: 361 PSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPKDAN 420
           PSSALDLIKKKLQESGTPVASSPIS PTIAQSDVNLPRDADAAVKALQTENSK KPKDAN
Sbjct: 361 PSSALDLIKKKLQESGTPVASSPISAPTIAQSDVNLPRDADAAVKALQTENSKVKPKDAN 420

Query: 421 GDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 478
           GDGNVSDSSSDSED+DSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK
Sbjct: 421 GDGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 477

[Close]

BLAST of Carg18921 vs. ExPASy TrEMBL
Match: A0A0A0K978 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447710 PE=4 SV=1)

HSP 1 Score: 789.3 bits (2037), Expect = 9.2e-225
Identity = 412/484 (85.12%), Postives = 439/484 (90.70%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQS+SLPAPPTSNSAANGSSIPNLIP+TSPVPPA SFHIHQL    PMVPGPP
Sbjct: 1   MSSASTVSQSVSLPAPPTSNSAANGSSIPNLIPSTSPVPPAPSFHIHQLPSVAPMVPGPP 60

Query: 61  GMSPSMP-------VMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVS 120
           GMSPSMP       V+FPP+DS  +STIPGPNMHA  N I+ S RPQICGSYPSL PVVS
Sbjct: 61  GMSPSMPLVSTGPAVLFPPTDS--ASTIPGPNMHAIHNPIHPSARPQICGSYPSLTPVVS 120

Query: 121 PPHAIWFQPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSS 180
           PPHA+WFQPPQLG MPRPPFLPY  SYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQV+S
Sbjct: 121 PPHAMWFQPPQLGAMPRPPFLPYSTSYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVAS 180

Query: 181 ATAVPSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGI 240
             +VPS HGN L GN+LIQTD NHPELD+ KHAQG+G SE+ISL+KHSE+WTAHKTEAGI
Sbjct: 181 GISVPSGHGNQLIGNTLIQTDSNHPELDSHKHAQGVGHSENISLNKHSEDWTAHKTEAGI 240

Query: 241 MYYYNALTGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKT 300
           +YYYNALTGESTYEKPSGF+GE +NLM Q TSVSMSNLSGTDWVLVTMGDGKKYYYNNKT
Sbjct: 241 IYYYNALTGESTYEKPSGFRGEAENLMAQATSVSMSNLSGTDWVLVTMGDGKKYYYNNKT 300

Query: 301 KISSWQIPNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPL 360
           KISSWQIPNEV+ELRQQNDEKTKE SAPLPNNNA T+ G+S  S+NTPAI+TGGREA PL
Sbjct: 301 KISSWQIPNEVSELRQQNDEKTKELSAPLPNNNASTDLGTSSTSINTPAINTGGREATPL 360

Query: 361 RTVGVSGPSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSK 420
           RTVG+SG SSALDLIKKKLQ+SGTPVASSPIS PT+AQSDVNLPRDADA VKALQTEN K
Sbjct: 361 RTVGISGSSSALDLIKKKLQDSGTPVASSPISAPTVAQSDVNLPRDADATVKALQTEN-K 420

Query: 421 DKPKDANGDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD 478
           DKPKDAN DGNVSDSSSDSED+DSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD
Sbjct: 421 DKPKDANADGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD 480

[Close]

BLAST of Carg18921 vs. ExPASy TrEMBL
Match: A0A5D3BYD0 (Pre-mRNA-processing protein 40C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001920 PE=4 SV=1)

HSP 1 Score: 786.6 bits (2030), Expect = 6.0e-224
Identity = 409/484 (84.50%), Postives = 437/484 (90.29%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQS+SLPAPPTSNS ANGSSIPNLIP+TSPVPPA SFHIHQL P  PMVPGPP
Sbjct: 1   MSSASTVSQSVSLPAPPTSNSVANGSSIPNLIPSTSPVPPAPSFHIHQLPPVAPMVPGPP 60

Query: 61  GMSPSMP-------VMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVS 120
           GMSPS P       V+FPP+DS  +STIPGPNMHA  N I+ S RPQICGSYPSL PVVS
Sbjct: 61  GMSPSTPLVSTGPAVLFPPTDS--ASTIPGPNMHAIHNPIHPSARPQICGSYPSLTPVVS 120

Query: 121 PPHAIWFQPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSS 180
           PPHA+WFQPPQLG MPRPPF+PY ASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQV+S
Sbjct: 121 PPHAMWFQPPQLGAMPRPPFIPYSASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVAS 180

Query: 181 ATAVPSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGI 240
           A  VPS HGN L GNSLIQTD NHPELD+QKH Q +G SE+ISL+KHSE+WTAHKTEAGI
Sbjct: 181 AIPVPSGHGNQLIGNSLIQTDSNHPELDSQKHTQVVGHSENISLNKHSEDWTAHKTEAGI 240

Query: 241 MYYYNALTGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKT 300
           +YYYNALTGESTYEKP GF+GE +NL+ Q TSVSMSNLSGTDWVLVTMGDGKKYYYNNKT
Sbjct: 241 IYYYNALTGESTYEKPPGFRGEAENLVAQATSVSMSNLSGTDWVLVTMGDGKKYYYNNKT 300

Query: 301 KISSWQIPNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPL 360
           KISSWQIPNEV+ELRQQNDEKTKE SAPLPNNNALT+ G+S  S+NTPAI+TGGREA PL
Sbjct: 301 KISSWQIPNEVSELRQQNDEKTKELSAPLPNNNALTDLGTSSSSINTPAINTGGREATPL 360

Query: 361 RTVGVSGPSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSK 420
           RTVG+ G SSALDLIKKKLQ+SGTPVASSPIS  T+AQSDVNLPRDADA VKALQTEN+K
Sbjct: 361 RTVGIPGSSSALDLIKKKLQDSGTPVASSPISATTVAQSDVNLPRDADATVKALQTENNK 420

Query: 421 DKPKDANGDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD 478
           DKPKDAN DGNVSDSSSDSED+DSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD
Sbjct: 421 DKPKDANADGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD 480

[Close]

BLAST of Carg18921 vs. ExPASy TrEMBL
Match: A0A5A7V0S2 (Pre-mRNA-processing protein 40C OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00550 PE=4 SV=1)

HSP 1 Score: 786.6 bits (2030), Expect = 6.0e-224
Identity = 409/484 (84.50%), Postives = 437/484 (90.29%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAANGSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPGPP 60
           MSSASTVSQS+SLPAPPTSNS ANGSSIPNLIP+TSPVPPA SFHIHQL P  PMVPGPP
Sbjct: 1   MSSASTVSQSVSLPAPPTSNSVANGSSIPNLIPSTSPVPPAPSFHIHQLPPVAPMVPGPP 60

Query: 61  GMSPSMP-------VMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVS 120
           GMSPS P       V+FPP+DS  +STIPGPNMHA  N I+ S RPQICGSYPSL PVVS
Sbjct: 61  GMSPSTPLVSTGPAVLFPPTDS--ASTIPGPNMHAIHNPIHPSARPQICGSYPSLTPVVS 120

Query: 121 PPHAIWFQPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVSS 180
           PPHA+WFQPPQLG MPRPPF+PY ASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQV+S
Sbjct: 121 PPHAMWFQPPQLGAMPRPPFIPYSASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVAS 180

Query: 181 ATAVPSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGI 240
           A  VPS HGN L GNSLIQTD NHPELD+QKH Q +G SE+ISL+KHSE+WTAHKTEAGI
Sbjct: 181 AIPVPSGHGNQLIGNSLIQTDSNHPELDSQKHTQVVGHSENISLNKHSEDWTAHKTEAGI 240

Query: 241 MYYYNALTGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKT 300
           +YYYNALTGESTYEKP GF+GE +NL+ Q TSVSMSNLSGTDWVLVTMGDGKKYYYNNKT
Sbjct: 241 IYYYNALTGESTYEKPPGFRGEAENLVAQATSVSMSNLSGTDWVLVTMGDGKKYYYNNKT 300

Query: 301 KISSWQIPNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPL 360
           KISSWQIPNEV+ELRQQNDEKTKE SAPLPNNNALT+ G+S  S+NTPAI+TGGREA PL
Sbjct: 301 KISSWQIPNEVSELRQQNDEKTKELSAPLPNNNALTDLGTSSSSINTPAINTGGREATPL 360

Query: 361 RTVGVSGPSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSK 420
           RTVG+ G SSALDLIKKKLQ+SGTPVASSPIS  T+AQSDVNLPRDADA VKALQTEN+K
Sbjct: 361 RTVGIPGSSSALDLIKKKLQDSGTPVASSPISATTVAQSDVNLPRDADATVKALQTENNK 420

Query: 421 DKPKDANGDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD 478
           DKPKDAN DGNVSDSSSDSED+DSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD
Sbjct: 421 DKPKDANADGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFD 480

[Close]

BLAST of Carg18921 vs. TAIR 10
Match: AT3G19840.1 (pre-mRNA-processing protein 40C )

HSP 1 Score: 320.5 bits (820), Expect = 2.3e-87
Identity = 216/480 (45.00%), Postives = 282/480 (58.75%), Query Frame = 0


Query: 1   MSSASTVSQSMSLPAPPTSNSAAN--GSSIPNLIPATSPVPPAQSFHIHQLAPGTPMVPG 60
           MS AST   S S+P   T+    N   SS  N IP  SP+     F       G P    
Sbjct: 49  MSIASTGFVSQSVPYSVTAQWGTNAAASSNVNPIPQASPMLANAPF-------GRPGTLA 108

Query: 61  PPGMSPSMPVMFPPSDSSASSTIPGPNMHAAPNSINTSVRPQICGSYPSLAPVVSPPHAI 120
           PPG+  S P  FP   S+  ST P P M A P  +N  + P +   YP    +   P  +
Sbjct: 109 PPGLMTSPPA-FP--GSNPFSTTPRPGMSAGPAQMNPGIHPHM---YPPYHSLPGTPQGM 168

Query: 121 WFQPPQLGGMPRPPFLPYPASYHGPLPFPARGMPLPSVPLPDPQPPGVTPV-QVSSATAV 180
           W QPP +GG+PR PFL +P ++ G  PFP RG+  P++P     P G +P+  V +  A+
Sbjct: 169 WLQPPSMGGIPRAPFLSHPTTFPGSYPFPVRGIS-PNLPYSGSHPLGASPMGSVGNVHAL 228

Query: 181 PSTHGNHLTGNSLIQTDFNHPELDAQKHAQGMGQSESISLSKHSENWTAHKTEAGIMYYY 240
           P    +   G    +       +D +  +Q +G           + WTAHK+EAG++YYY
Sbjct: 229 PGRQPDISPGRKTEELS----GIDDRAGSQLVG--------NRLDAWTAHKSEAGVLYYY 288

Query: 241 NALTGESTYEKPSGFKGEPDNLMVQPTSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISS 300
           N++TG+STYEKP GF GEPD + VQP  VSM +L GTDW LV+  DGKKYYYNNKTK+SS
Sbjct: 289 NSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGKKYYYNNKTKVSS 348

Query: 301 WQIPNEVTELRQQNDEKTKEHSAPLPNNNALTEPGSSPISMNTPAISTGGREAMPLRTVG 360
           WQIP EV +  ++ +E+  E  A +P+ + LTE GS   S++ PAIS GGR+A  L+T  
Sbjct: 349 WQIPAEVKDFGKKLEERAMESVASVPSAD-LTEKGSDLTSLSAPAISNGGRDAASLKTTN 408

Query: 361 VSGPSSALDLIKKKLQESGTPVASSPISVPTIAQSDVNLPRDADAAVKALQTENSKDKPK 420
               SSALDL+KKKL +SG PV+S+         S+ N  +  +      ++ NS  K K
Sbjct: 409 FG--SSALDLVKKKLHDSGMPVSST-------ITSEANSGKTTEVTPSG-ESGNSTGKVK 468

Query: 421 DANGDGNVSDSSSDSEDIDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFK 478
           DA G G +SDSSSDSED DSGP+ E+   QFKEMLKERG+APFSKW+KELPKI+FDPRFK
Sbjct: 469 DAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFDPRFK 491

The following BLAST results are available for this feature:

BLAST of Carg18921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013927.1	8.2e-268	100.00	Pre-mRNA-processing protein 40C [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022953473.1	1.0e-265	99.58	pre-mRNA-processing protein 40C [Cucurbita moschata] >XP_022953474.1 pre-mRNA-pr...	[more]
KAG6575389.1	1.0e-265	99.79	Pre-mRNA-processing protein 40C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547625.1	2.5e-264	98.95	pre-mRNA-processing protein 40C [Cucurbita pepo subsp. pepo] >XP_023547626.1 pre...	[more]
XP_022992104.1	2.2e-260	97.90	pre-mRNA-processing protein 40C [Cucurbita maxima] >XP_022992105.1 pre-mRNA-proc...	[more]

BLAST of Carg18921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT25	3.3e-86	45.00	Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana OX=3702 GN=PRP40C PE=1 S...	[more]
O75400	1.9e-09	22.33	Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens OX=9606 GN=PRPF40A PE=1 ...	[more]
Q8CGF7	9.5e-09	22.14	Transcription elongation regulator 1 OS=Mus musculus OX=10090 GN=Tcerg1 PE=1 SV=...	[more]
O14776	4.7e-08	23.71	Transcription elongation regulator 1 OS=Homo sapiens OX=9606 GN=TCERG1 PE=1 SV=2	[more]
Q9R1C7	8.0e-08	22.25	Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=10090 GN=Prpf40a PE=1...	[more]

BLAST of Carg18921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNF1	4.8e-266	99.58	pre-mRNA-processing protein 40C OS=Cucurbita moschata OX=3662 GN=LOC111456014 PE...	[more]
A0A6J1JUS6	1.0e-260	97.90	pre-mRNA-processing protein 40C OS=Cucurbita maxima OX=3661 GN=LOC111488550 PE=4...	[more]
A0A0A0K978	9.2e-225	85.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447710 PE=4 SV=1	[more]
A0A5D3BYD0	6.0e-224	84.50	Pre-mRNA-processing protein 40C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V0S2	6.0e-224	84.50	Pre-mRNA-processing protein 40C OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Carg18921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19840.1	2.3e-87	45.00	pre-mRNA-processing protein 40C	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	SMART	SM00456	ww_5	coord: 271..303 e-value: 0.0011 score: 28.2 coord: 219..251 e-value: 2.4E-6 score: 37.1
IPR001202	WW domain	PFAM	PF00397	WW	coord: 222..249 e-value: 2.8E-7 score: 30.5
IPR001202	WW domain	PROSITE	PS01159	WW_DOMAIN_1	coord: 276..301
IPR001202	WW domain	PROSITE	PS01159	WW_DOMAIN_1	coord: 224..249
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 276..303 score: 10.895901
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 218..251 score: 9.97
IPR001202	WW domain	CDD	cd00201	WW	coord: 274..303 e-value: 2.80614E-6 score: 41.7446
IPR001202	WW domain	CDD	cd00201	WW	coord: 222..249 e-value: 3.95088E-7 score: 44.441
IPR036517	FF domain superfamily	GENE3D	1.10.10.440	FF domain	coord: 439..479 e-value: 1.6E-10 score: 42.7
IPR036517	FF domain superfamily	SUPERFAMILY	81698	FF domain	coord: 441..478
None	No IPR available	GENE3D	2.20.70.10		coord: 260..321 e-value: 5.4E-13 score: 50.3
None	No IPR available	GENE3D	2.20.70.10		coord: 217..258 e-value: 5.4E-11 score: 43.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..442
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 408..442
None	No IPR available	PANTHER	PTHR15377:SF3	TRANSCRIPTION ELONGATION REGULATOR HOMOLOG	coord: 3..477
IPR002713	FF domain	PFAM	PF01846	FF	coord: 447..478 e-value: 3.0E-7 score: 30.5
IPR045148	Transcription elongation regulator 1-like	PANTHER	PTHR15377	TRANSCRIPTION ELONGATION REGULATOR 1	coord: 3..477
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 275..307
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 223..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18921-RA	Carg18921-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0070063	RNA polymerase binding
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0005515	protein binding