Carg18902 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18902
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 7779121 .. 7784422 (-)
RNA-Seq ExpressionCarg18902
SyntenyCarg18902
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCCACAACATGGCCATGACGAGGTTGTAAATGGGAGGAATGGGTTTGTAAATGTCGTTGAAGTACATGTTCAGAAAGTCCTACATGCGCATTACACATTATGATATGTGATTGATATGATAAGACTAAATGGTTGAAGTTCAACTTAAATTACCTGCTCAGCAAACAAGGTTGGAGTTGTGGCCTTGCAAGTTTCGAGAAGATCCTTGTAGGTGAAGAGGTCGGGTTCATACACAAAAAATCCAGCGTTGAAGTAAAGAGGGGGTGGGTTTCCCATTTCCTCCACAGGCCACTTGACTTTGTCAGGGCATTGCTGGCAGTAACCAATCTTGTACTGCGGTGAGTTACTCCATGTCTTCTCACAGAAGCAGTCCATCACGGCGTAGAAGTATCCATTTGGCATTTCGAACAGATGGTCGATGTTCTCAAACACTTGAATGTCTCCATCCAAATATATCAGCTTCTCGTACTCCACAAACTGCAATCAAACACTTTTGAGTATATATTTAAATTTGAATGAACGAATGAACGAACGAGCGAATCGAACGTACCTCCCAAATCCTAAGCTTTGAGTAGTTGATAACATAGTATGCCATCGCAAATTGAGTCTGGTTTGCAGGGGGGTAAACAGGCTCGATTTCGCGGACGATGCATCCCTGATACTCGAGAATCTGGCGATGGTCTTCGGGAACATCAGGCAGGACAGCTACAATGAGAGGGTAGACGGTTTTGACCTTTCTGAGACCCTTTGCCAATCCAACCACACCTTTCCAATAGTCTCCATTACCGGCCAAGAACGTCACGAATGCCCTCTTGGGAGCATCGGTCGACTCGATGGCAGTTTCGGTGGCAGCCGGAGACATATTGATTATGTGGGTGGTTTTGGAACAACAAAGAGTTGTTGAGAAAGGGAGGCAAGAAGGACTTGTAGGGCAGGTTTAAGTTGTAGGTTTAGTCCTTCAAGCTTGAGTTGTGGAGGGATGGGAATGCAGGTATTTATAAAGCCGTGGGGGGGCATGTTAGTATTGTGATTACTTGGTATTAATACAAACACTGCAATTAAGAGAATGGAATTGGTGGGATGAATATGAGTTGGAATCCTATCCTTAAGCTGTGAGATGGACAAGATTCTTATGTTTTGCACCTTTGGATCATCCCCTTTGCCTTTTGGATACTCATCTTAATTATGGATCATTCCCTCTCTTGCAAGTTTGTAGACAAGACAAATGTGGACAATTTGGGGAGGATCTAAGAATCTCAGACTTTGACATATATTAAAACTCTATGTCAATATAAATAAGGGTGTAGAAACTTCTCCTCAGTAGACGCGTTTTAAAAACTTTATGGAGAAGCCCGAAAGAGAAAGTCCGAAGAGGACAATATCGGCTAGTAGTGGGGTTGAACCGTTATAAATGGTATCAGAGACAGACACTGAGTGATGTGCCCGCGAGGAGGCTGAGTCGTGAAGGGGGACACGACGAGGGGTAGAGACTTAGGCACTACACAAAGTGGAAAAAAAAAAGAAAGAAAAGAAAAGGAAAGCTGCTTTTGTCCAGATGATTCGATTCTTGTATATACAATTTGAATGGTTTTGAAGAAGAAGATGCCCCACACGGTTGAATCAGCTTAGCTTTGTGGAAATACGTTGTCTTCTAGTGCACCTCAGTATTCCATTGGTGTGAAGGCTGTTATTTCCAACTTTTTATAGGATTCTGCACTTTTTCCCAACTCATTTCATGCCTTCTAAACATTATCAAATAAGAACTAAAACAATTTCTGTTCTTATAATCCAAAGAACATAGTTGGATGTTTTGGCAAGAACTCAAATCATTTTCAGATTATTCTTCATTACACCAACTTGGGTACCTATAGATTAACATGGATATACCAAAGCCAAGAAGGTGTTTAAAACTCAGGTTAGAATCTGGCCCCTTTGAATCTGGCTCCTTTTCACGTGGAACAAGCGCTGCACAATCGTTGTCCCAATGCCACAAGAGTGTGATTCTGATAAGTGGTATTAGAGCAGAGTCGGCTCCTTGAATTGTAGTAAACAAATATGTCCATTGCAAAACAACTCGGCAAGAATGACCTGATGGAATGTGGTTTTTGGAATCTTGCATGAATGAGATTGCCGTTAAAGCCTATAGGATCGACAAGATGGTAAGCCACCTTAAGGTAATGTCTGTCTGTGAATTAATGGTTAGTGTTGAGGCCTTAGAAGACAAGGCCACTACTGCTGGTGGCTTTGAGCGTGGGGCTAGCTTGATGGGCACTGTTGCCTGAATTGAAGAACGCAACGAATGCTTAGAGAATGCCCAACAAGCGATTGTTCAGACGGTCTCAGAAATGTTTGAGGATTCAAGAGAAGTCGTTGGAGTGGTTAGGGTTGAAGTCGCAAATCTTAGCGCTAGATTAAATCTAGCCATAAGAACGGTGGGGAACCAAACCCCGACTGGAGGTGTAGTCCAATTCAACAAGATAAAAGGTCTTGGAGCTCAAGCCCTTCTGTGGGGCTCAAAATACCAAGGTTCTAGAGAACTTTATCTTTGACCTCGAACAGTGCTTTCGAGTCACAAATACTGTAGCGGAAGAAGCGAAGGTCACGTTGGCAAATATGCATCTAGCCAACAATGCAAAGTTGTGGTAGACATTCAAGATGGTTGATGTACTGTAGACACTTGGAGGAGCTTAAAACAAGAACTTCACTCTCAGTTCTTCTCAGAGAATGTCGAGATAATCGTAAGAAGGAAGTTAAGGGAGCTGAGACATATTGGCAATATCCGAGACTACGTTAAACAGTTTTTTGATCTTATGTTAGATATTTGTGATATGTTTGAAAAAGACAAGGTCATCAGTTTTGTTGAGGGCTGGAGTCGTGGGTGAAAACCAATCTCTACGAACAAAAAGCTCAAGATCTTTCCATGGCCTATGCTATAGTCGAACGATTGTTTGATTTTAACATCGATCAACCCCAAGATATAGGGCAGAACCAGGCTTAAGCAAGTAGTGAAAATAAAAATTATTGACTCAGCTTTCTCAAAGATGGAGGAAGTGACAGACTTGAAGGCGGAGGAGAGGAATGTGAGTCCTTCCAATAGAAAGGTAAAATTCTATGGCGGAGACCCACTGCCAGAACCGTCCTAGTCAAAGCCATGGCCTCTCGTCTTGCTTCATATGCAAGGGAACCCACTGAAAAACTGAGTGCCCACAAAAGGCGGACACTCTATGACTTCCAAAAAAAAATTTTGAAATGAACTTTGAAGCTGAGTACGAGACGACATAAATTGAAACATCGCTAGTAAAAAACATAGAGAACTCCCGTGTGGGGGCCTTAAAGTATTTATCTACCCTCTAGAAGAGAGTGTGTGAGATAGAACAGGTAGTGAAACGCAATCTTATGTATGTTGAGGTTTGGGTCAACCACAGAGTGCCCAAGAACACTATTGTTGGCTATGGAGCCACCCACAACTTCATGATAGAGATCGAAGTGAAACACTTAAACATCCTATGACATCGAGATACAAGATAGAATGAAAGTCGTCAATTCAGCAGCCCTACTTGTCTCAGGGGTTGCAAAGTGAACTCGTATTAAGATATAATAACCTAGCAAGAGAGTTAATATAATAATCCATTTTTTTTCATCATAATTGAAACCAAACCTACTCATCACACCTCGGATTCAAAAGGTAACCTAACATTTTTCCTATTATGAATTTAATTTAACTTATTAATTGTTTTATTACACACAATTTACTCGAATTTATGGAAAATGTATAAATGGAATCTATATGGTAGGACACCGTGAACCTTTCAATTATTACTTAATTCATAATCAATTCAATTTTTATTTTTAATTTAATAATATCATTATCTCAGGAGGAATGTGAGAAGGGTGATGATAGAGTTTGCGTCACGTGACATTTCACGTGCTACTAGAAATTATTAAATTTATGTAAAATTTTCATTGGGGGAGGCTGATTTTGCAGCTGCTGATGCTTCTGGTTGATAATGGGGATGGCGAGATAGCTTTAAGCGGCACACGGAATTCTTACGTCCTCTTTTCAACGCAGCACACTTCCCCTATCGACGTAGTCTTCTCCGGTCACCGCTGCACAACCCCCAAATCTTCTTCCGCCATTCACTCCGCCGCTTCAACTTCCTCCACATTACCAGCACAGTTCCTGAGGATCTAGACTCCAATTTCCGCTCTTCATGCTCTTCCTCACTTTTGATTATTAGGGTTTTCTTTTGCCTGCTGCTTTCTTTCTCACTTCCCTTGGCGTATTTCATTCCTAGAAGCTGCAATTTGAGGTTTCTTTCTTTCATTTCTGTATCTTTTCGATTATTTCTGCCTAACATCGTAAATAACGATTTTCTCTATGCTTCTTTTGAAACTTTGTTTTGAAATTGGCTTCCTTCTTAACTTTTGCCTACTCTTTCTGGAATCAAGAATACGGATAAATCAGAAAAAAAAAAAAAAAAAAAAAACGTGCTTTACTCGGCAATATAGTCGGAGAATTGTGACACTTGAACAGCTATAAGTAATCTGTATATAGTTAGAGCGCGTGGGAAATTTATGTGAAAATTAACTTTGTTCTTGATCTTTGTCACTCGGTAGCCATCGGTCTACCGGGGTACTGGAAATGAGGCATTTCCCGAAATATGGATTAAGGACATATATCATCGACCAGTGTGTGTTATTTTCGTGTTAGTTGACTCTAATATTTTATTTGCTACGATTTTTTTGCTTTTGCGTGACTATCCTTCATTGAGGGTGCTTTTTGCCACAGCTCCGGAAAATGGGTGCTCCTGTCGTAGTTCTTTTTCCAGAAGAAGAATCACAACAAGGTTTTGTCTAACTACACAATTGGTCATAAATTCTAATGACGCACAAAATTAATATATAGTTGTAGTCATGCAATATAAAGCGCACACCAACTTACTTTGTAACAATTAACCTACAGAAATTGAAAAGGAAAAGGGTGTGAGTCTTAGGTGCACCGTAGTGAAACCACATAAAATGCAAGTTATGCCTCGAACAACACTGGTTATGAATGTCTACATAATTGCTTTCTCTATTTAAAAAAGTTTTTTTTCCTTTTTGTCCTTGCTGATTTCCCTTCAATGCTTTTTTGACCCTGTAATGCTAGATTATGTTTGCGTCCATTAATGTGCTTTCTTCATATTTCTTGTGCCAATTTCTATTTATATTATCATCAACATATTTGTTACTTTAATGATCATCAAAGGAAACAAATTAGGCTTTGACTATATACTTCTTTTGTCTACAGGCTATAA

mRNA sequence

ATGACGCCACAACATGGCCATGACGAGGTTGTAAATGGGAGGAATGGGTTTGTAAATGTCGTTGAAACTAAATGGTTGAAGTTCAACTTAAATTACCTGCTCAGCAAACAAGGTTGGAGTTGTGGCCTTGCAAGTTTCGAGAAGATCCTTGTAGGTGAAGAGGTCGGGTTCATACACAAAAAATCCAGCGTTGAAGTAAAGAGGGGGTGGGTTTCCCATTTCCTCCACAGGCCACTTGACTTTGTCAGGGCATTGCTGGCAGTAACCAATCTTGTACTGCGGGGGGTAAACAGGCTCGATTTCGCGGACGATGCATCCCTGATACTCGAGAATCTGGCGATGGTCTTCGGGAACATCAGGCAGGACAGCTACAATGAGAGGGTAGACGGTTTTGACCTTTCTGAGACCCTTTGCCAATCCAACCACACCTTTCCAATAGTCTCCATTACCGGCCAAGAACGTCACGAATGCCCTCTTGGGAGCATCGGTCGACTCGATGGCAGTTTCGGTGGCAGCCGGAGACATATTGATTATGAGGAATGTGAGAAGGGTGATGATAGACTGCTGATGCTTCTGGTTGATAATGGGGATGGCGAGATAGCTTTAAGCGGCACACGGAATTCTTACGTCCTCTTTTCAACGCAGCACACTTCCCCTATCGACGTAGTCTTCTCCGGTCACCGCTGCACAACCCCCAAATCTTCTTCCGCCATTCACTCCGCCGCTTCAACTTCCTCCACATTACCAGCACAGCTATAA

Coding sequence (CDS)

ATGACGCCACAACATGGCCATGACGAGGTTGTAAATGGGAGGAATGGGTTTGTAAATGTCGTTGAAACTAAATGGTTGAAGTTCAACTTAAATTACCTGCTCAGCAAACAAGGTTGGAGTTGTGGCCTTGCAAGTTTCGAGAAGATCCTTGTAGGTGAAGAGGTCGGGTTCATACACAAAAAATCCAGCGTTGAAGTAAAGAGGGGGTGGGTTTCCCATTTCCTCCACAGGCCACTTGACTTTGTCAGGGCATTGCTGGCAGTAACCAATCTTGTACTGCGGGGGGTAAACAGGCTCGATTTCGCGGACGATGCATCCCTGATACTCGAGAATCTGGCGATGGTCTTCGGGAACATCAGGCAGGACAGCTACAATGAGAGGGTAGACGGTTTTGACCTTTCTGAGACCCTTTGCCAATCCAACCACACCTTTCCAATAGTCTCCATTACCGGCCAAGAACGTCACGAATGCCCTCTTGGGAGCATCGGTCGACTCGATGGCAGTTTCGGTGGCAGCCGGAGACATATTGATTATGAGGAATGTGAGAAGGGTGATGATAGACTGCTGATGCTTCTGGTTGATAATGGGGATGGCGAGATAGCTTTAAGCGGCACACGGAATTCTTACGTCCTCTTTTCAACGCAGCACACTTCCCCTATCGACGTAGTCTTCTCCGGTCACCGCTGCACAACCCCCAAATCTTCTTCCGCCATTCACTCCGCCGCTTCAACTTCCTCCACATTACCAGCACAGCTATAA

Protein sequence

MTPQHGHDEVVNGRNGFVNVVETKWLKFNLNYLLSKQGWSCGLASFEKILVGEEVGFIHKKSSVEVKRGWVSHFLHRPLDFVRALLAVTNLVLRGVNRLDFADDASLILENLAMVFGNIRQDSYNERVDGFDLSETLCQSNHTFPIVSITGQERHECPLGSIGRLDGSFGGSRRHIDYEECEKGDDRLLMLLVDNGDGEIALSGTRNSYVLFSTQHTSPIDVVFSGHRCTTPKSSSAIHSAASTSSTLPAQL
Homology
[Close]
BLAST of Carg18902 vs. NCBI nr
Match: KAG7026368.1 (hypothetical protein SDJN02_12870, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 514.2 bits (1323), Expect = 6.2e-142
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 

Query: 1   MTPQHGHDEVVNGRNGFVNVVETKWLKFNLNYLLSKQGWSCGLASFEKILVGEEVGFIHK 60
           MTPQHGHDEVVNGRNGFVNVVETKWLKFNLNYLLSKQGWSCGLASFEKILVGEEVGFIHK
Sbjct: 1   MTPQHGHDEVVNGRNGFVNVVETKWLKFNLNYLLSKQGWSCGLASFEKILVGEEVGFIHK 60

Query: 61  KSSVEVKRGWVSHFLHRPLDFVRALLAVTNLVLRGVNRLDFADDASLILENLAMVFGNIR 120
           KSSVEVKRGWVSHFLHRPLDFVRALLAVTNLVLRGVNRLDFADDASLILENLAMVFGNIR
Sbjct: 61  KSSVEVKRGWVSHFLHRPLDFVRALLAVTNLVLRGVNRLDFADDASLILENLAMVFGNIR 120

Query: 121 QDSYNERVDGFDLSETLCQSNHTFPIVSITGQERHECPLGSIGRLDGSFGGSRRHIDYEE 180
           QDSYNERVDGFDLSETLCQSNHTFPIVSITGQERHECPLGSIGRLDGSFGGSRRHIDYEE
Sbjct: 121 QDSYNERVDGFDLSETLCQSNHTFPIVSITGQERHECPLGSIGRLDGSFGGSRRHIDYEE 180

Query: 181 CEKGDDRLLMLLVDNGDGEIALSGTRNSYVLFSTQHTSPIDVVFSGHRCTTPKSSSAIHS 240
           CEKGDDRLLMLLVDNGDGEIALSGTRNSYVLFSTQHTSPIDVVFSGHRCTTPKSSSAIHS
Sbjct: 181 CEKGDDRLLMLLVDNGDGEIALSGTRNSYVLFSTQHTSPIDVVFSGHRCTTPKSSSAIHS 240

Query: 241 AASTSSTLPAQL 253
           AASTSSTLPAQL
Sbjct: 241 AASTSSTLPAQL 252

[Close]
BLAST of Carg18902 vs. NCBI nr
Match: KAG6594027.1 (hypothetical protein SDJN03_13503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 9.0e-24
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 190 MLLVDNGDGEIALSGTRNSYVLFSTQHTSPIDVVFSGHRCTTPKSSSAIHSAASTSSTLP 249
           MLLVDNGDGEIALSGTRNSYVLFSTQHTSPIDVVFSGHRCTTPKSSSAIHSAASTSSTLP
Sbjct: 1   MLLVDNGDGEIALSGTRNSYVLFSTQHTSPIDVVFSGHRCTTPKSSSAIHSAASTSSTLP 60

Query: 250 AQL 253
           AQ+
Sbjct: 61  AQV 63

[Close]
BLAST of Carg18902 vs. NCBI nr
Match: ACR36593.1 (unknown [Zea mays])

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-05
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 91  LVLRGVNRLDFADDASLILENLAMVFGNIRQDSYNERVDGFDLSETLCQSNHTFPIVSIT 150
           LVLR V+ LD ADDA+L  E+ A+  G++ Q  +++ V   DL++ L Q +H  P+V++ 
Sbjct: 282 LVLRRVHGLDLADDAALRDEDAAVGLGHVGQHRHHQGVGRADLAQALGQPHHALPVVAVA 341

Query: 151 GQERHECPLGSIGR 165
            +ERH  P G + R
Sbjct: 342 RKERHVRPRGRLHR 355

[Close]
BLAST of Carg18902 vs. ExPASy TrEMBL
Match: C4J5Z3 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-05
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 91  LVLRGVNRLDFADDASLILENLAMVFGNIRQDSYNERVDGFDLSETLCQSNHTFPIVSIT 150
           LVLR V+ LD ADDA+L  E+ A+  G++ Q  +++ V   DL++ L Q +H  P+V++ 
Sbjct: 282 LVLRRVHGLDLADDAALRDEDAAVGLGHVGQHRHHQGVGRADLAQALGQPHHALPVVAVA 341

Query: 151 GQERHECPLGSIGR 165
            +ERH  P G + R
Sbjct: 342 RKERHVRPRGRLHR 355

[Close]
BLAST of Carg18902 vs. ExPASy TrEMBL
Match: A0A5J5B399 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029194 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-04
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 0 

Query: 21  VETKWLKFNLNYLLSKQGWSCGLASFEKILVGEEVGFIHKKSSVEVKRGWVSHFLHRPLD 80
           +E  W    +NYLLSK+G    L   +++++G E G + K +S+EV+R      L  PLD
Sbjct: 81  IEEAWA---VNYLLSKRGRRGNLEGLQEVIIGGETGLVDKHASIEVERR-PGPQLGGPLD 140

Query: 81  FVRALLAVTNLVLRGV 97
            + ALLAV NLVL  V
Sbjct: 141 LIWALLAVANLVLWAV 152

The following BLAST results are available for this feature:
BLAST of Carg18902 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026368.16.2e-142100.00hypothetical protein SDJN02_12870, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6594027.19.0e-2498.41hypothetical protein SDJN03_13503, partial [Cucurbita argyrosperma subsp. sorori... [more]
ACR36593.14.2e-0540.54unknown [Zea mays][more]
BLAST of Carg18902 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18902 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
C4J5Z32.0e-0540.54Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A5J5B3995.0e-0442.11Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029194 PE=4 SV=1[more]
BLAST of Carg18902 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..252

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18902-RACarg18902-RAmRNA