Carg18893 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18893
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SINE3
Location	Carg_Chr08: 7736438 .. 7737504 (+)
RNA-Seq Expression	Carg18893
Synteny	Carg18893

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAGGACGAAAGAATACCAAACTCCTCTGAGAGATCAAGCTGCGAATCGTAGATCAAAGAAGCCTCTGAAGGTACAGTTTCTTTTGTCTGTTCTTCTCATCTTTCTCATTCTCTAGCTTAATCTCTCGTTCGTTCTGCTGCAATTAAGATCACCAAGAGTTTGACTGCCACATTTTCATCATTTTGCGACGATAAAATCCAGCCAATTTCGAAGGAAGACTTTTCTCCGATTTCCGTTGTCTCAAACATCAGTCAAATTCCTGATATCGACAGTGTAAGTTCCGATTCATTTGTGATTTTTGGACGATCTGTTCGATTTAACTTTTCATTTTTGCTGTGTCTCCGTGCTGTATCTGCGTTATTTTTTATTTCTTTTATTAGTTGATCTCAATTTGGGGCCCATTCATACTGAGAAGAAGATTTGTTATCTATTATTTGCTCAAGTCATATTCGTTTTTTTTCTCCGCCTATAATCTACTGCGACTAGAGTGTTCACTTTGAAATTTAATGTATGGTCAAGCAACGAAACAAAGTATATTTGATTTATGGCACTGGAATATGATTGATTTCAAATTTTTCTGGTTTTCTAAGTTAGTTTTCTCTATTTCAGAGTTTCTTGCAAGATGTCAATCCAGCTCTTTCAGTTTCCTGCGAGAGCTCGCTTTTCCCCGAACTTTCTCCATCTTCAGTTGTTACTTTTGACAATAAGCAGCTTGACAAGGTTCCAGTTAATTTTGGTGGATCTAATAATTTAGATGAAGCAAGCGCGGGTTCAGTGGAGGCGGAGATTGCCGTGAATTACTTAAGGCGTGCTCTTAGTCAAGTCTTGCAATCGACGGATGTTGATCATCAGTCTAAGAAGCTGATAGATGCATCCGTGAGGATCATTGTGGACGAATTTCTCGCCATACCTCAAGAGAGAGACCTGATTACTCGGCTTATTTCTTCCAAAAGTCATGTTCTGTCTCTAGGTTTATTCCTATGGATCATCGTCTTGGTATTTGCTTTCTTTTCTGGTTCGGGAGTCGAGAACTGTTTCATTGGTCCACTGCCAACTTAA

mRNA sequence

ATGGAGAAAAGGACGAAAGAATACCAAACTCCTCTGAGAGATCAAGCTGCGAATCGTAGATCAAAGAAGCCTCTGAAGATCACCAAGAGTTTGACTGCCACATTTTCATCATTTTGCGACGATAAAATCCAGCCAATTTCGAAGGAAGACTTTTCTCCGATTTCCGTTGTCTCAAACATCAGTCAAATTCCTGATATCGACAGTAGTTTCTTGCAAGATGTCAATCCAGCTCTTTCAGTTTCCTGCGAGAGCTCGCTTTTCCCCGAACTTTCTCCATCTTCAGTTGTTACTTTTGACAATAAGCAGCTTGACAAGGTTCCAGTTAATTTTGGTGGATCTAATAATTTAGATGAAGCAAGCGCGGGTTCAGTGGAGGCGGAGATTGCCGTGAATTACTTAAGGCGTGCTCTTAGTCAAGTCTTGCAATCGACGGATGTTGATCATCAGTCTAAGAAGCTGATAGATGCATCCGTGAGGATCATTGTGGACGAATTTCTCGCCATACCTCAAGAGAGAGACCTGATTACTCGGCTTATTTCTTCCAAAAGTCATGTTCTGTCTCTAGGTTTATTCCTATGGATCATCGTCTTGGTATTTGCTTTCTTTTCTGGTTCGGGAGTCGAGAACTGTTTCATTGGTCCACTGCCAACTTAA

Coding sequence (CDS)

ATGGAGAAAAGGACGAAAGAATACCAAACTCCTCTGAGAGATCAAGCTGCGAATCGTAGATCAAAGAAGCCTCTGAAGATCACCAAGAGTTTGACTGCCACATTTTCATCATTTTGCGACGATAAAATCCAGCCAATTTCGAAGGAAGACTTTTCTCCGATTTCCGTTGTCTCAAACATCAGTCAAATTCCTGATATCGACAGTAGTTTCTTGCAAGATGTCAATCCAGCTCTTTCAGTTTCCTGCGAGAGCTCGCTTTTCCCCGAACTTTCTCCATCTTCAGTTGTTACTTTTGACAATAAGCAGCTTGACAAGGTTCCAGTTAATTTTGGTGGATCTAATAATTTAGATGAAGCAAGCGCGGGTTCAGTGGAGGCGGAGATTGCCGTGAATTACTTAAGGCGTGCTCTTAGTCAAGTCTTGCAATCGACGGATGTTGATCATCAGTCTAAGAAGCTGATAGATGCATCCGTGAGGATCATTGTGGACGAATTTCTCGCCATACCTCAAGAGAGAGACCTGATTACTCGGCTTATTTCTTCCAAAAGTCATGTTCTGTCTCTAGGTTTATTCCTATGGATCATCGTCTTGGTATTTGCTTTCTTTTCTGGTTCGGGAGTCGAGAACTGTTTCATTGGTCCACTGCCAACTTAA

Protein sequence

MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT

Homology

[Close]

BLAST of Carg18893 vs. NCBI nr
Match: KAG6594019.1 (hypothetical protein SDJN03_13495, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026359.1 hypothetical protein SDJN02_12861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 409.8 bits (1052), Expect = 1.4e-110
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI
Sbjct: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS
Sbjct: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS
Sbjct: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
           SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT
Sbjct: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 217

[Close]

BLAST of Carg18893 vs. NCBI nr
Match: XP_022930352.1 (uncharacterized protein LOC111436822 [Cucurbita moschata])

HSP 1 Score: 405.2 bits (1040), Expect = 3.5e-109
Identity = 215/217 (99.08%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVVSNI
Sbjct: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPILKEDFSPISVVSNI 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS
Sbjct: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS
Sbjct: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
           SKSHVLSLGLFLWIIVLV AFFSGSGVENCFIGPLPT
Sbjct: 181 SKSHVLSLGLFLWIIVLVLAFFSGSGVENCFIGPLPT 217

[Close]

BLAST of Carg18893 vs. NCBI nr
Match: XP_022999957.1 (uncharacterized protein LOC111494286 [Cucurbita maxima] >XP_022999958.1 uncharacterized protein LOC111494286 [Cucurbita maxima] >XP_022999959.1 uncharacterized protein LOC111494286 [Cucurbita maxima])

HSP 1 Score: 398.7 bits (1023), Expect = 3.3e-107
Identity = 212/217 (97.70%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVVSNI
Sbjct: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPILKEDFSPISVVSNI 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFG SNNLDEAS
Sbjct: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGESNNLDEAS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGSVEAEIAVNYLRRAL QVLQSTDVDHQSKKLIDASVRIIVD+FLAIPQERDLITRLIS
Sbjct: 121 AGSVEAEIAVNYLRRALIQVLQSTDVDHQSKKLIDASVRIIVDDFLAIPQERDLITRLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
           SKSHVLSLGLFLWIIVLV AFFSGSGVENCFIGPLPT
Sbjct: 181 SKSHVLSLGLFLWIIVLVLAFFSGSGVENCFIGPLPT 217

[Close]

BLAST of Carg18893 vs. NCBI nr
Match: XP_023514806.1 (uncharacterized protein LOC111779010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.0 bits (1011), Expect = 8.1e-106
Identity = 209/217 (96.31%), Postives = 211/217 (97.24%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVV NI
Sbjct: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPILKEDFSPISVVPNI 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           +QIPDID+SFLQDVNPALSVSCESSLFPEL PSSVVTFDNKQLDKVPVNFGGSNNLDEAS
Sbjct: 61  NQIPDIDTSFLQDVNPALSVSCESSLFPELFPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGSVEAEIAVNYLRRAL QVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS
Sbjct: 121 AGSVEAEIAVNYLRRALIQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
           SKSHVLSLGLFLWIIVLV AFFSG GVENCFIGPLPT
Sbjct: 181 SKSHVLSLGLFLWIIVLVLAFFSGLGVENCFIGPLPT 217

[Close]

BLAST of Carg18893 vs. NCBI nr
Match: XP_038876305.1 (uncharacterized protein LOC120068561 [Benincasa hispida])

HSP 1 Score: 323.9 bits (829), Expect = 1.0e-84
Identity = 171/217 (78.80%), Postives = 193/217 (88.94%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEK+ K+YQTP RDQ ANRRS+KP KI K LTATFSS  DDKIQPISKEDFSPISVV++I
Sbjct: 1   MEKKMKDYQTPQRDQTANRRSRKPQKIAKCLTATFSSLSDDKIQPISKEDFSPISVVTDI 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           +QIPDIDS+FLQ VNPA S SCE+SLF +LSPSSVV+FDN+QLDKVPVNF GSN++DEAS
Sbjct: 61  NQIPDIDSNFLQGVNPAFSASCETSLFADLSPSSVVSFDNEQLDKVPVNFSGSNDMDEAS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGSVE +IAVN LRRAL+QVLQSTDVDHQSKKLIDAS+ IIVD+FLAIPQERD I +LIS
Sbjct: 121 AGSVEVQIAVNSLRRALTQVLQSTDVDHQSKKLIDASMSIIVDDFLAIPQERDQIAQLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
            K+HVLSL +FLWIIVL  AFF GSGV++ FIGPLPT
Sbjct: 181 VKNHVLSLCVFLWIIVLAIAFFLGSGVKSSFIGPLPT 217

[Close]

BLAST of Carg18893 vs. ExPASy TrEMBL
Match: A0A6J1EQ83 (uncharacterized protein LOC111436822 OS=Cucurbita moschata OX=3662 GN=LOC111436822 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.7e-109
Identity = 215/217 (99.08%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVVSNI
Sbjct: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPILKEDFSPISVVSNI 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS
Sbjct: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS
Sbjct: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
           SKSHVLSLGLFLWIIVLV AFFSGSGVENCFIGPLPT
Sbjct: 181 SKSHVLSLGLFLWIIVLVLAFFSGSGVENCFIGPLPT 217

[Close]

BLAST of Carg18893 vs. ExPASy TrEMBL
Match: A0A6J1KL67 (uncharacterized protein LOC111494286 OS=Cucurbita maxima OX=3661 GN=LOC111494286 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.6e-107
Identity = 212/217 (97.70%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVVSNI
Sbjct: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPILKEDFSPISVVSNI 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFG SNNLDEAS
Sbjct: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGESNNLDEAS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGSVEAEIAVNYLRRAL QVLQSTDVDHQSKKLIDASVRIIVD+FLAIPQERDLITRLIS
Sbjct: 121 AGSVEAEIAVNYLRRALIQVLQSTDVDHQSKKLIDASVRIIVDDFLAIPQERDLITRLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
           SKSHVLSLGLFLWIIVLV AFFSGSGVENCFIGPLPT
Sbjct: 181 SKSHVLSLGLFLWIIVLVLAFFSGSGVENCFIGPLPT 217

[Close]

BLAST of Carg18893 vs. ExPASy TrEMBL
Match: A0A6J1H5Y6 (uncharacterized protein LOC111460327 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460327 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.5e-78
Identity = 162/217 (74.65%), Postives = 184/217 (84.79%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           ME+R K+ QTP RDQAANRRS+KPLKI K LTATFSS  DDKIQ  SK+DFS ISVVS++
Sbjct: 1   MERRMKDSQTPQRDQAANRRSRKPLKIAKCLTATFSSLSDDKIQRSSKQDFSSISVVSDV 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           +QIPDID SFL DVNPALS  C SSL P+LSPSSVVTFDN QLDKVPVNF GSN+LDE  
Sbjct: 61  NQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDETG 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGSV AEIAV+ L RAL+QVLQSTDVDHQ+KKLIDAS+RIIVD+FLAIPQ+RD I ++IS
Sbjct: 121 AGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
           +K+ VLS+ LFLWIIVL  AFF  S V++ FIGPLPT
Sbjct: 181 AKNQVLSISLFLWIIVLALAFFFNSEVKSSFIGPLPT 217

[Close]

BLAST of Carg18893 vs. ExPASy TrEMBL
Match: A0A6J1CAA2 (uncharacterized protein LOC111009828 OS=Momordica charantia OX=3673 GN=LOC111009828 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.4e-76
Identity = 158/217 (72.81%), Postives = 183/217 (84.33%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEKR KEYQTP RD AANRRS+KP KI KSL ATFSS  DDK+QPIS EDFSPI  VS+I
Sbjct: 1   MEKRMKEYQTPQRDPAANRRSRKPQKIAKSLAATFSSLSDDKVQPISMEDFSPIYEVSDI 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           +Q+PD+D SFLQ VNPALS S ESS FP+LSPSSVVT +N+Q DK+PVNF GSN+L + S
Sbjct: 61  NQVPDMDRSFLQVVNPALSASFESSFFPDLSPSSVVTAENEQTDKIPVNFAGSNDLVKGS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           A SVEAEIAV++LRRALSQVLQSTDVDHQSKKL+DAS+RIIV++F+AIPQE+D I +LIS
Sbjct: 121 ACSVEAEIAVDFLRRALSQVLQSTDVDHQSKKLLDASMRIIVEDFVAIPQEQDHIAQLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
           +KS VLSL  FLWII+L  AFF GSG ++ F GP PT
Sbjct: 181 AKSLVLSLCFFLWIIILALAFFFGSGAKSSFSGPPPT 217

[Close]

BLAST of Carg18893 vs. ExPASy TrEMBL
Match: A0A1S4E1Y8 (uncharacterized protein LOC103497781 OS=Cucumis melo OX=3656 GN=LOC103497781 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 8.0e-75
Identity = 154/217 (70.97%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 1   MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNI 60
           MEKR K++QTP R+Q  NRRS+KP KI K LTA+FSS  +DKI  ISKE+ SPISVVS++
Sbjct: 1   MEKRMKDHQTPQREQTTNRRSRKPQKIAKCLTASFSSLSEDKIHSISKENSSPISVVSDV 60

Query: 61  SQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNFGGSNNLDEAS 120
           +QI DIDSSFLQ VNP  S  C++SLFP+LSPSSVV+FDN+ LDKV V+F GSN+++EAS
Sbjct: 61  NQISDIDSSFLQGVNPEFSACCDTSLFPDLSPSSVVSFDNELLDKVSVDFSGSNDMNEAS 120

Query: 121 AGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLIS 180
           AGS+EAEIAVN LRRAL+QVL STDVDHQSKKLIDAS+RIIVD+FLAIPQERD I +LIS
Sbjct: 121 AGSLEAEIAVNSLRRALTQVLLSTDVDHQSKKLIDASMRIIVDDFLAIPQERDRIAQLIS 180

Query: 181 SKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT 218
            K++VLS+ +FLWI+VL  AFF GSGV++ F GPLPT
Sbjct: 181 VKNYVLSMCVFLWIVVLAIAFFVGSGVKSSFTGPLPT 217

The following BLAST results are available for this feature:

BLAST of Carg18893 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594019.1	1.4e-110	100.00	hypothetical protein SDJN03_13495, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930352.1	3.5e-109	99.08	uncharacterized protein LOC111436822 [Cucurbita moschata]	[more]
XP_022999957.1	3.3e-107	97.70	uncharacterized protein LOC111494286 [Cucurbita maxima] >XP_022999958.1 uncharac...	[more]
XP_023514806.1	8.1e-106	96.31	uncharacterized protein LOC111779010 [Cucurbita pepo subsp. pepo]	[more]
XP_038876305.1	1.0e-84	78.80	uncharacterized protein LOC120068561 [Benincasa hispida]	[more]

BLAST of Carg18893 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18893 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQ83	1.7e-109	99.08	uncharacterized protein LOC111436822 OS=Cucurbita moschata OX=3662 GN=LOC1114368...	[more]
A0A6J1KL67	1.6e-107	97.70	uncharacterized protein LOC111494286 OS=Cucurbita maxima OX=3661 GN=LOC111494286...	[more]
A0A6J1H5Y6	4.5e-78	74.65	uncharacterized protein LOC111460327 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CAA2	9.4e-76	72.81	uncharacterized protein LOC111009828 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A1S4E1Y8	8.0e-75	70.97	uncharacterized protein LOC103497781 OS=Cucumis melo OX=3656 GN=LOC103497781 PE=...	[more]

BLAST of Carg18893 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18893-RA	Carg18893-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane