Carg18880 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18880
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L29
Location	Carg_Chr08: 7683191 .. 7683928 (-)
RNA-Seq Expression	Carg18880
Synteny	Carg18880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCTAGAATTTGCAGCCACCGCTGGGTCCGAGGTTTGTTCTACTACTCTCCTTCCATTGATTTCATTTACTACGAAATTTGGCGTAGCTTTAGTTTTCTGATTTCACTTTCTCGTTTCTGCTTTTTTATTCTGTGATATTTAGAAATGGCCAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGAAAAGCCCATAGGAATGGCATCAAGAAGCCAAGGAAGCACCGCCACACTTCCACCAAAGGGGTACGAAATACATGAACGAAATCATTGTTTTTCTTTTTGGTTCGATTATTTCATATAGAATGTTACTTCAAAATTGTTTGGCTTTATTTGATAGTGTTTTGTCGATCTGTGTGTAGATGGATCCCAAGTTTCTGAGGAATCAAAGGTACGCCAAGAAACACAACAACAAGAGTGGTGAAAGCGGTACTGAGGAAGAGTAATTTAGAACGCCGTTAATTTGAATTTCGAGTCTGCTTCGATTGAACATTTTTATGTCTCTGCCCTTTTTGTTCATTAGTATAGTTATTTTTACTTGAATTTAACGAGTCCTGTTACGACTATCGATTAACCTGTTCTGGAAGTTCAATTTTTTAGTGATTGATTGTGTTTTCACACTCATTTCTGCATTCTCTCTTGTTTCTTCTTCTTCTGGTTTTAATGGATCCTAATGTTGTCAGTTCATTGCTGACACTTGTTTCTTTCAAATGCATTATGATTTCTTTTTTTGG

mRNA sequence

AAACCCTAGAATTTGCAGCCACCGCTGGGTCCGAGAAATGGCCAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGAAAAGCCCATAGGAATGGCATCAAGAAGCCAAGGAAGCACCGCCACACTTCCACCAAAGGGATGGATCCCAAGTTTCTGAGGAATCAAAGGTACGCCAAGAAACACAACAACAAGAGTGGTGAAAGCGGTACTGAGGAAGAGTAATTTAGAACGCCGTTAATTTGAATTTCGAGTCTGCTTCGATTGAACATTTTTATGTCTCTGCCCTTTTTGTTCATTAGTATAGTTATTTTTACTTGAATTTAACGAGTCCTGTTACGACTATCGATTAACCTGTTCTGGAAGTTCAATTTTTTAGTGATTGATTGTGTTTTCACACTCATTTCTGCATTCTCTCTTGTTTCTTCTTCTTCTGGTTTTAATGGATCCTAATGTTGTCAGTTCATTGCTGACACTTGTTTCTTTCAAATGCATTATGATTTCTTTTTTTGG

Coding sequence (CDS)

ATGGCCAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGAAAAGCCCATAGGAATGGCATCAAGAAGCCAAGGAAGCACCGCCACACTTCCACCAAAGGGATGGATCCCAAGTTTCTGAGGAATCAAAGGTACGCCAAGAAACACAACAACAAGAGTGGTGAAAGCGGTACTGAGGAAGAGTAA

Protein sequence

MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEEE

Homology

[Close]

BLAST of Carg18880 vs. NCBI nr
Match: XP_023000056.1 (60S ribosomal protein L29-1-like [Cucurbita maxima] >KAG7026347.1 60S ribosomal protein L29-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. NCBI nr
Match: XP_023514068.1 (60S ribosomal protein L29-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 3.2e-23
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK GESGTEE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKGGESGTEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. NCBI nr
Match: KAG7013674.1 (60S ribosomal protein L29-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+G+EE
Sbjct: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117

Query: 61  E 62
           E
Sbjct: 118 E 118

[Close]

BLAST of Carg18880 vs. NCBI nr
Match: XP_022930442.1 (60S ribosomal protein L29-1-like [Cucurbita moschata])

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRN RYAKKHNNKSGESGTEE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNLRYAKKHNNKSGESGTEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. NCBI nr
Match: XP_022959482.1 (60S ribosomal protein L29-1-like [Cucurbita moschata] >XP_022959483.1 60S ribosomal protein L29-1-like [Cucurbita moschata] >XP_023006357.1 60S ribosomal protein L29-1-like [Cucurbita maxima] >XP_023006358.1 60S ribosomal protein L29-1-like [Cucurbita maxima] >XP_023549485.1 60S ribosomal protein L29-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+G+EE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. ExPASy Swiss-Prot
Match: Q9M7X7 (60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-20
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE+ + E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. ExPASy Swiss-Prot
Match: Q84WM0 (60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 3.4e-20
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE+   E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. ExPASy Swiss-Prot
Match: Q58DW3 (60S ribosomal protein L29 OS=Bos taurus OX=9913 GN=RPL29 PE=2 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 7.3e-15
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 53
          MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

[Close]

BLAST of Carg18880 vs. ExPASy Swiss-Prot
Match: P47914 (60S ribosomal protein L29 OS=Homo sapiens OX=9606 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 7.3e-15
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 53
          MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

[Close]

BLAST of Carg18880 vs. ExPASy Swiss-Prot
Match: Q8HXB8 (60S ribosomal protein L29 OS=Macaca fascicularis OX=9541 GN=RPL29 PE=2 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 7.3e-15
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 53
          MAKSKNHT HNQSRK HRNGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

[Close]

BLAST of Carg18880 vs. ExPASy TrEMBL
Match: A0A6J1KET9 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494363 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. ExPASy TrEMBL
Match: A0A6J1L4P4 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499112 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-23
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+G+EE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. ExPASy TrEMBL
Match: A0A6J1H4N3 (60S ribosomal protein L29 OS=Cucurbita moschata OX=3662 GN=LOC111460442 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-23
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+G+EE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. ExPASy TrEMBL
Match: A0A6J1EQI3 (60S ribosomal protein L29 OS=Cucurbita moschata OX=3662 GN=LOC111436885 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-23
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRN RYAKKHNNKSGESGTEE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNLRYAKKHNNKSGESGTEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. ExPASy TrEMBL
Match: A0A6J1L1Y3 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499113 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.8e-23
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQSRKAHRNGIKKPRKHR+TSTKGMDPKFLRNQRYAKKHNNKSGE+GTEE
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETGTEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. TAIR 10
Match: AT3G06700.1 (Ribosomal L29e protein family )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE+ + E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. TAIR 10
Match: AT3G06700.2 (Ribosomal L29e protein family )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE+ + E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. TAIR 10
Match: AT3G06700.3 (Ribosomal L29e protein family )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE+ + E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

[Close]

BLAST of Carg18880 vs. TAIR 10
Match: AT3G06680.1 (Ribosomal L29e protein family )

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-21
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE+   E
Sbjct: 23 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 82

Query: 61 E 62
          E
Sbjct: 83 E 83

[Close]

BLAST of Carg18880 vs. TAIR 10
Match: AT3G06680.2 (Ribosomal L29e protein family )

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-21
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60
          MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE+   E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

The following BLAST results are available for this feature:

BLAST of Carg18880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000056.1	1.1e-23	100.00	60S ribosomal protein L29-1-like [Cucurbita maxima] >KAG7026347.1 60S ribosomal ...	[more]
XP_023514068.1	3.2e-23	98.36	60S ribosomal protein L29-1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7013674.1	7.0e-23	96.72	60S ribosomal protein L29-1, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022930442.1	7.0e-23	98.36	60S ribosomal protein L29-1-like [Cucurbita moschata]	[more]
XP_022959482.1	7.0e-23	96.72	60S ribosomal protein L29-1-like [Cucurbita moschata] >XP_022959483.1 60S riboso...	[more]

BLAST of Carg18880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M7X7	2.6e-20	80.33	60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1	[more]
Q84WM0	3.4e-20	81.97	60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2	[more]
Q58DW3	7.3e-15	78.85	60S ribosomal protein L29 OS=Bos taurus OX=9913 GN=RPL29 PE=2 SV=3	[more]
P47914	7.3e-15	78.85	60S ribosomal protein L29 OS=Homo sapiens OX=9606 GN=RPL29 PE=1 SV=2	[more]
Q8HXB8	7.3e-15	78.85	60S ribosomal protein L29 OS=Macaca fascicularis OX=9541 GN=RPL29 PE=2 SV=3	[more]

BLAST of Carg18880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KET9	5.2e-24	100.00	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494363 PE=3 SV=1	[more]
A0A6J1L4P4	3.4e-23	96.72	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499112 PE=3 SV=1	[more]
A0A6J1H4N3	3.4e-23	96.72	60S ribosomal protein L29 OS=Cucurbita moschata OX=3662 GN=LOC111460442 PE=3 SV=...	[more]
A0A6J1EQI3	3.4e-23	98.36	60S ribosomal protein L29 OS=Cucurbita moschata OX=3662 GN=LOC111436885 PE=3 SV=...	[more]
A0A6J1L1Y3	5.8e-23	96.72	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499113 PE=3 SV=1	[more]

BLAST of Carg18880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06700.1	1.8e-21	80.33	Ribosomal L29e protein family	[more]
AT3G06700.2	1.8e-21	80.33	Ribosomal L29e protein family	[more]
AT3G06700.3	1.8e-21	80.33	Ribosomal L29e protein family	[more]
AT3G06680.1	2.4e-21	81.97	Ribosomal L29e protein family	[more]
AT3G06680.2	2.4e-21	81.97	Ribosomal L29e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002673	Ribosomal protein L29e	PFAM	PF01779	Ribosomal_L29e	coord: 3..42 e-value: 3.4E-24 score: 84.9
IPR002673	Ribosomal protein L29e	PANTHER	PTHR12884	60S RIBOSOMAL PROTEIN L29	coord: 1..61
None	No IPR available	GENE3D	6.10.140.1730		coord: 1..61 e-value: 5.6E-31 score: 108.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR12884:SF30	60S RIBOSOMAL PROTEIN L29	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18880-RA	Carg18880-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome