Carg18870 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18870
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger protein 6-like
Location	Carg_Chr08: 7634959 .. 7635330 (+)
RNA-Seq Expression	Carg18870
Synteny	Carg18870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTGTTTGGTTTTTCAGTGACGGCTAGTGATCAAGCCACCATGGGTGCGCCATGCGCGAACCTCAACAAGGACGATAAGCGATTCGAGTGCCAATTCTGTGGCCGTGAGTTCGCCAATTCTCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCGTTTCGATCCCAATAAACATCCTCGTTTTTTCACTTCCACGCCGCCGCCCTCCGCCACCGTCATCTGGTCCAGATCTGGTGGTGCTCCGCCGTCTGCTGCTGGTGGTGGTGGTGGTGAAGTGAATGGGGAAAATGGCGTTGATCTCCACCTCAGTCTCGCGCCATCCTCAAGGATCTTCTGTTAA

mRNA sequence

ATGAAGCTGTTTGGTTTTTCAGTGACGGCTAGTGATCAAGCCACCATGGGTGCGCCATGCGCGAACCTCAACAAGGACGATAAGCGATTCGAGTGCCAATTCTGTGGCCGTGAGTTCGCCAATTCTCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCGTTTCGATCCCAATAAACATCCTCGTTTTTTCACTTCCACGCCGCCGCCCTCCGCCACCGTCATCTGGTCCAGATCTGGTGGTGCTCCGCCGTCTGCTGCTGGTGGTGGTGGTGGTGAAGTGAATGGGGAAAATGGCGTTGATCTCCACCTCAGTCTCGCGCCATCCTCAAGGATCTTCTGTTAA

Coding sequence (CDS)

ATGAAGCTGTTTGGTTTTTCAGTGACGGCTAGTGATCAAGCCACCATGGGTGCGCCATGCGCGAACCTCAACAAGGACGATAAGCGATTCGAGTGCCAATTCTGTGGCCGTGAGTTCGCCAATTCTCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCGTTTCGATCCCAATAAACATCCTCGTTTTTTCACTTCCACGCCGCCGCCCTCCGCCACCGTCATCTGGTCCAGATCTGGTGGTGCTCCGCCGTCTGCTGCTGGTGGTGGTGGTGGTGAAGTGAATGGGGAAAATGGCGTTGATCTCCACCTCAGTCTCGCGCCATCCTCAAGGATCTTCTGTTAA

Protein sequence

MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSRIFC

Homology

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: XP_023514440.1 (zinc finger protein 6-like [Cucurbita pepo subsp. pepo] >KAG7026337.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.4 bits (651), Expect = 2.6e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK
Sbjct: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60

Query: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR 120
           QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR
Sbjct: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR 120

Query: 121 IFC 124
           IFC
Sbjct: 121 IFC 123

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: KAG6593997.1 (Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFGFSVTASDQAT+GAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK
Sbjct: 1   MKLFGFSVTASDQATLGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60

Query: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR 120
           QLRFDPNKHPRFFT+TPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR
Sbjct: 61  QLRFDPNKHPRFFTTTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR 120

Query: 121 IFC 124
           IFC
Sbjct: 121 IFC 123

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: XP_022930487.1 (zinc finger protein 6-like [Cucurbita moschata] >XP_023000211.1 zinc finger protein 6-like [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 2.4e-62
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK
Sbjct: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60

Query: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR 120
           QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA GGGGEVNGENGVDLHLSLAPSSR
Sbjct: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA-GGGGEVNGENGVDLHLSLAPSSR 120

Query: 121 IFC 124
           IFC
Sbjct: 121 IFC 122

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: KGN47401.1 (hypothetical protein Csa_022997 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 95/141 (67.38%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRE 60
           MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRE
Sbjct: 2   MKLFGFSVTASTTSTDGATNLGAPCPNHN---KRFECQFCGREFANSQALGGHQNAHKRE 61

Query: 61  RQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPPSAAG---------GGGGEVN 120
           RQLAKQ L   P KH R F ++ PPS+TV IWS +G APP   G          GGGEVN
Sbjct: 62  RQLAKQLLPLQPTKHSRNFLASTPPSSTVGIWS-AGRAPPPKYGIQVQARPAVVGGGEVN 121

Query: 121 GE-NGVDLHLSLAPSS-RIFC 124
            E NGVDLHLSLAPSS RIFC
Sbjct: 122 RESNGVDLHLSLAPSSGRIFC 138

[Close]

BLAST of Carg18870 vs. NCBI nr
Match: XP_004150094.1 (zinc finger protein 6 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 95/141 (67.38%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRE 60
           MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRE
Sbjct: 1   MKLFGFSVTASTTSTDGATNLGAPCPNHN---KRFECQFCGREFANSQALGGHQNAHKRE 60

Query: 61  RQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPPSAAG---------GGGGEVN 120
           RQLAKQ L   P KH R F ++ PPS+TV IWS +G APP   G          GGGEVN
Sbjct: 61  RQLAKQLLPLQPTKHSRNFLASTPPSSTVGIWS-AGRAPPPKYGIQVQARPAVVGGGEVN 120

Query: 121 GE-NGVDLHLSLAPSS-RIFC 124
            E NGVDLHLSLAPSS RIFC
Sbjct: 121 RESNGVDLHLSLAPSSGRIFC 137

[Close]

BLAST of Carg18870 vs. ExPASy Swiss-Prot
Match: Q39265 (Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-11
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 1   MKLFGFSV----TASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRER 60
           +KLFG ++    +  +Q++   P +    + +++ECQ+C REFANSQALGGHQNAHK+ER
Sbjct: 8   LKLFGINLLETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKER 67

Query: 61  QLAKQLR------------FDPNKHPRFFTSTPPP 80
           QL K+ +            F P+ +P      P P
Sbjct: 68  QLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLP 102

[Close]

BLAST of Carg18870 vs. ExPASy Swiss-Prot
Match: Q39264 (Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-10
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MKLFGFSVTASDQ----ATMGAPCANLNKDD----KRFECQFCGREFANSQALGGHQNAH 60
          +KLFGF + +  +     T  +  ++ N       KR ECQ+CG+EFANSQALGGHQNAH
Sbjct: 23 IKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGHQNAH 82

Query: 61 KRERQLAKQLRFDPNK 69
          K+ER   K+L+    +
Sbjct: 83 KKERLKKKRLQLQARR 98

[Close]

BLAST of Carg18870 vs. ExPASy Swiss-Prot
Match: Q9FG05 (Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1  MKLFGFSVTASDQATMGAPCANLN----KDD---KRFECQFCGREFANSQALGGHQNAHK 60
          ++LFGF   AS + +      N N    KDD   KRF+C +C R F  SQALGGHQNAHK
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 61 RERQLAKQLRFDPN 68
          RERQ  K+     N
Sbjct: 79 RERQQTKRFNLHSN 92

[Close]

BLAST of Carg18870 vs. ExPASy Swiss-Prot
Match: Q9C9H1 (Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-08
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 27  DKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKH 70
           ++++ECQ+C REF NSQALGGHQNAHK+ERQ  K+ +    ++
Sbjct: 70  ERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRN 112

[Close]

BLAST of Carg18870 vs. ExPASy Swiss-Prot
Match: P93751 (Zinc finger protein 8 OS=Arabidopsis thaliana OX=3702 GN=ZFP8 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-08
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 24  NKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ 62
           N +++RFEC +C R F  SQALGGHQNAHKRERQ AK+
Sbjct: 89  NNNNRRFECHYCFRNFPTSQALGGHQNAHKRERQHAKR 126

[Close]

BLAST of Carg18870 vs. ExPASy TrEMBL
Match: A0A6J1KF91 (zinc finger protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111494501 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK
Sbjct: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60

Query: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR 120
           QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA GGGGEVNGENGVDLHLSLAPSSR
Sbjct: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA-GGGGEVNGENGVDLHLSLAPSSR 120

Query: 121 IFC 124
           IFC
Sbjct: 121 IFC 122

[Close]

BLAST of Carg18870 vs. ExPASy TrEMBL
Match: A0A6J1EQN3 (zinc finger protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436927 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK
Sbjct: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60

Query: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDLHLSLAPSSR 120
           QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA GGGGEVNGENGVDLHLSLAPSSR
Sbjct: 61  QLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA-GGGGEVNGENGVDLHLSLAPSSR 120

Query: 121 IFC 124
           IFC
Sbjct: 121 IFC 122

[Close]

BLAST of Carg18870 vs. ExPASy TrEMBL
Match: A0A0A0KI02 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312040 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.6e-33
Identity = 95/141 (67.38%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRE 60
           MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRE
Sbjct: 2   MKLFGFSVTASTTSTDGATNLGAPCPNHN---KRFECQFCGREFANSQALGGHQNAHKRE 61

Query: 61  RQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPPSAAG---------GGGGEVN 120
           RQLAKQ L   P KH R F ++ PPS+TV IWS +G APP   G          GGGEVN
Sbjct: 62  RQLAKQLLPLQPTKHSRNFLASTPPSSTVGIWS-AGRAPPPKYGIQVQARPAVVGGGEVN 121

Query: 121 GE-NGVDLHLSLAPSS-RIFC 124
            E NGVDLHLSLAPSS RIFC
Sbjct: 122 RESNGVDLHLSLAPSSGRIFC 138

[Close]

BLAST of Carg18870 vs. ExPASy TrEMBL
Match: A0A6J1KZQ7 (zinc finger protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111499068 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.1e-31
Identity = 89/130 (68.46%), Postives = 95/130 (73.08%), Query Frame = 0


Query: 1   MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60
           MKLFG+SVTAS + ++GAPC N     KRFECQFCGREFANSQALGGHQNAHKRERQLAK
Sbjct: 1   MKLFGYSVTASAEPSLGAPCTN---HIKRFECQFCGREFANSQALGGHQNAHKRERQLAK 60

Query: 61  QLRFDPNKHPR-FFTSTPPPSATVI-----WSRSGGAPPSAAGGGGGEVNGE-NGVDLHL 120
           QL       PR FFT TPPPSA  I     +     APPS    GGGE+NGE NGVDLHL
Sbjct: 61  QLL------PRNFFTPTPPPSAAGISPPPNYEMPVEAPPSV---GGGEINGENNGVDLHL 118

Query: 121 SLAPSS-RIF 123
           SLAPSS RIF
Sbjct: 121 SLAPSSTRIF 118

[Close]

BLAST of Carg18870 vs. ExPASy TrEMBL
Match: A0A6J1C9X8 (zinc finger protein 5-like OS=Momordica charantia OX=3673 GN=LOC111009726 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.1e-31
Identity = 82/132 (62.12%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 1   MKLFGFSVT--ASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQL 60
           MKLFGFSVT  A +     A  A  NKD+KRFECQFCGR+FANSQALGGHQNAHKRER L
Sbjct: 1   MKLFGFSVTAGAGEGNVRDAAAARANKDEKRFECQFCGRDFANSQALGGHQNAHKRERHL 60

Query: 61  AKQLRFD-------PNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVDL 120
           AKQLRFD        NKHPRF +ST PP+          APP  A     E+ G+NGVDL
Sbjct: 61  AKQLRFDSNNHRRQQNKHPRFLSSTLPPA----------APPPLA----DEMYGDNGVDL 118

Query: 121 HLSLAPSSRIFC 124
           HL+LAPSS IFC
Sbjct: 121 HLTLAPSSGIFC 118

[Close]

BLAST of Carg18870 vs. TAIR 10
Match: AT1G67030.1 (zinc finger protein 6 )

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-12
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 1   MKLFGFSV----TASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRER 60
           +KLFG ++    +  +Q++   P +    + +++ECQ+C REFANSQALGGHQNAHK+ER
Sbjct: 8   LKLFGINLLETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKER 67

Query: 61  QLAKQLR------------FDPNKHPRFFTSTPPP 80
           QL K+ +            F P+ +P      P P
Sbjct: 68  QLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLP 102

[Close]

BLAST of Carg18870 vs. TAIR 10
Match: AT1G10480.1 (zinc finger protein 5 )

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-11
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MKLFGFSVTASDQ----ATMGAPCANLNKDD----KRFECQFCGREFANSQALGGHQNAH 60
          +KLFGF + +  +     T  +  ++ N       KR ECQ+CG+EFANSQALGGHQNAH
Sbjct: 23 IKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGHQNAH 82

Query: 61 KRERQLAKQLRFDPNK 69
          K+ER   K+L+    +
Sbjct: 83 KKERLKKKRLQLQARR 98

[Close]

BLAST of Carg18870 vs. TAIR 10
Match: AT5G06650.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 7.8e-11
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1  MKLFGFSVTASDQATMGAPCANLN----KDD---KRFECQFCGREFANSQALGGHQNAHK 60
          ++LFGF   AS + +      N N    KDD   KRF+C +C R F  SQALGGHQNAHK
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 61 RERQLAKQLRFDPN 68
          RERQ  K+     N
Sbjct: 79 RERQQTKRFNLHSN 92

[Close]

BLAST of Carg18870 vs. TAIR 10
Match: AT1G68360.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-09
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 27  DKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKH 70
           ++++ECQ+C REF NSQALGGHQNAHK+ERQ  K+ +    ++
Sbjct: 70  ERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRN 112

[Close]

BLAST of Carg18870 vs. TAIR 10
Match: AT2G41940.1 (zinc finger protein 8 )

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-09
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 24  NKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ 62
           N +++RFEC +C R F  SQALGGHQNAHKRERQ AK+
Sbjct: 89  NNNNRRFECHYCFRNFPTSQALGGHQNAHKRERQHAKR 126

The following BLAST results are available for this feature:

BLAST of Carg18870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514440.1	2.6e-64	100.00	zinc finger protein 6-like [Cucurbita pepo subsp. pepo] >KAG7026337.1 Zinc finge...	[more]
KAG6593997.1	1.3e-63	98.37	Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022930487.1	2.4e-62	99.19	zinc finger protein 6-like [Cucurbita moschata] >XP_023000211.1 zinc finger prot...	[more]
KGN47401.1	1.2e-32	67.38	hypothetical protein Csa_022997 [Cucumis sativus]	[more]
XP_004150094.1	1.2e-32	67.38	zinc finger protein 6 [Cucumis sativus]	[more]

BLAST of Carg18870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39265	3.4e-11	38.95	Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1	[more]
Q39264	8.4e-10	44.74	Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1	[more]
Q9FG05	1.1e-09	48.65	Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1	[more]
Q9C9H1	3.5e-08	55.81	Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1	[more]
P93751	3.5e-08	68.42	Zinc finger protein 8 OS=Arabidopsis thaliana OX=3702 GN=ZFP8 PE=1 SV=1	[more]

BLAST of Carg18870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KF91	1.2e-62	99.19	zinc finger protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111494501 PE=4 SV=1	[more]
A0A6J1EQN3	1.2e-62	99.19	zinc finger protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436927 PE=4 SV...	[more]
A0A0A0KI02	5.6e-33	67.38	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312040 P...	[more]
A0A6J1KZQ7	3.1e-31	68.46	zinc finger protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111499068 PE=4 SV=1	[more]
A0A6J1C9X8	3.1e-31	62.12	zinc finger protein 5-like OS=Momordica charantia OX=3673 GN=LOC111009726 PE=4 S...	[more]

BLAST of Carg18870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67030.1	2.4e-12	38.95	zinc finger protein 6	[more]
AT1G10480.1	5.9e-11	44.74	zinc finger protein 5	[more]
AT5G06650.1	7.8e-11	48.65	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G68360.1	2.5e-09	55.81	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT2G41940.1	2.5e-09	68.42	zinc finger protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 13..73 e-value: 3.5E-7 score: 31.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..105
None	No IPR available	PANTHER	PTHR46353:SF14	ZINC FINGER PROTEIN 8-LIKE	coord: 1..83
IPR044299	Zinc finger protein GIS3/ZFP5/ZFP6	PANTHER	PTHR46353	ZINC FINGER PROTEIN 5	coord: 1..83
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 32..52
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 30..57 score: 12.528368
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 26..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18870-RA	Carg18870-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0010090	trichome morphogenesis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding