Carg18856 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18856
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 7562358 .. 7563486 (+)
RNA-Seq ExpressionCarg18856
SyntenyCarg18856
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTGAGAGATGGAGAAATTAAGGCTCCTCAAGCTGACCAGGTGGCGGCTACCGCGAAGCCATCGGGTACGGCGGAGCAACCACCGTGGAAGATGAGAGAAAATCCGGTGGTGATCGTGAACCGCTGTCCCGTCGTCTCACCCTCCGGCGTAATCTCGATAACAGTCCTGCCTGGGAATATGCAAACCCAATATAGCATTTTTTTCGTCTAGAACAGGTGCTCGTAATGTAAATACATATAAATACAAGTACTTATCTGCAATATACATAAATATGTGAAGCTGTCAATCGTTTTCTTCTTGAATTGAACTATATTTAAATTGATAAACTTCGACTATTTTTATTTAGTTTAACTTACTTTTGTGTAGGTCTAATTTGTTGAACCAAGAATTTGCTACAAGTACTTATCTGCAATATACTCATGTGGCCAAGGATCAAAGTAGTATGACGTTGAGGTGAGACGAGCTAGTGTCGTTGTTGGGCATTCTTTAAAAGAGGAAGTTATGCTCTAGTGCAATTACATACCATTTTAATAAATAATATATAGAGGGTATTTTACGTATTGAGTCCATGTAATTTGTATATATGATACCTTAGCAAAAGATTTACCGAATCCCGATAAAGGGAGAACTAAAGTAAACGTGTAAGTTAGAATGTAAAGATGTCGATGGTAATGAGATATGCAACACTGTAACTTTACAATAAGAGATCTCACACGTCTATATATTGATCTTCGTCAGCGTTTCACCTTTGCTCTGCTCAATGTCACAATAGCACTTTCTAAACAGTGGACTAGTGATTGTGTGTGCTTGTTCTAATCCAATAAATAAGTAAACCGAAAAATCAAGCATACTATCTAACCTCAAATCTTATTCTGAGAGAAAGGTTTTAGAAAATCGAGAATTTATTTTGAAGTAAGTTAAATTAAACGAAGTCAATTGATAATAAAATACAATATTTGGTGGGAGAAGGTTTGATCACTACTTAATCCATTCAATCTTCCGGTTCGATTTAAAACTTGGGGGTCCGGATGCTCCCCACTCAACGATCCTTCTCCCAACTGGATCAATCGACCTCCAAAAGAGACGATACTCCTTGATGGCTGCGAATACGAGCACAGGCTGA

mRNA sequence

ATGTCTCTGAGAGATGGAGAAATTAAGGCTCCTCAAGCTGACCAGGTGGCGGCTACCGCGAAGCCATCGGGTACGGCGGAGCAACCACCGTGGAAGATGAGAGAAAATCCGGTGGTGATCGTGAACCGCTGTCCCGTCGTCTCACCCTCCGGCCAAAAGATTTACCGAATCCCGATAAAGGGAGAACTAAAGTTTGATCACTACTTAATCCATTCAATCTTCCGGTTCGATTTAAAACTTGGGGGTCCGGATGCTCCCCACTCAACGATCCTTCTCCCAACTGGATCAATCGACCTCCAAAAGAGACGATACTCCTTGATGGCTGCGAATACGAGCACAGGCTGA

Coding sequence (CDS)

ATGTCTCTGAGAGATGGAGAAATTAAGGCTCCTCAAGCTGACCAGGTGGCGGCTACCGCGAAGCCATCGGGTACGGCGGAGCAACCACCGTGGAAGATGAGAGAAAATCCGGTGGTGATCGTGAACCGCTGTCCCGTCGTCTCACCCTCCGGCCAAAAGATTTACCGAATCCCGATAAAGGGAGAACTAAAGTTTGATCACTACTTAATCCATTCAATCTTCCGGTTCGATTTAAAACTTGGGGGTCCGGATGCTCCCCACTCAACGATCCTTCTCCCAACTGGATCAATCGACCTCCAAAAGAGACGATACTCCTTGATGGCTGCGAATACGAGCACAGGCTGA

Protein sequence

MSLRDGEIKAPQADQVAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSGQKIYRIPIKGELKFDHYLIHSIFRFDLKLGGPDAPHSTILLPTGSIDLQKRRYSLMAANTSTG
Homology
[Close]
BLAST of Carg18856 vs. NCBI nr
Match: KAG7026324.1 (hypothetical protein SDJN02_12825, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.6 bits (597), Expect = 4.3e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSLRDGEIKAPQADQVAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSGQKIYRIPIK 60
           MSLRDGEIKAPQADQVAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSGQKIYRIPIK
Sbjct: 1   MSLRDGEIKAPQADQVAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSGQKIYRIPIK 60

Query: 61  GELKFDHYLIHSIFRFDLKLGGPDAPHSTILLPTGSIDLQKRRYSLMAANTSTG 115
           GELKFDHYLIHSIFRFDLKLGGPDAPHSTILLPTGSIDLQKRRYSLMAANTSTG
Sbjct: 61  GELKFDHYLIHSIFRFDLKLGGPDAPHSTILLPTGSIDLQKRRYSLMAANTSTG 114

[Close]
BLAST of Carg18856 vs. NCBI nr
Match: XP_023514439.1 (multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 4.0e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MSLRDGEIKAPQADQVAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSG 52
          MSLRDGEIKAPQADQ AATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSG
Sbjct: 26 MSLRDGEIKAPQADQAAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSG 76

[Close]
BLAST of Carg18856 vs. NCBI nr
Match: KAG6593984.1 (Multiple organellar RNA editing factor 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-11
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MSLRDGEIKAPQADQVAATAKPSGTAEQPPWKMRENPV 39
          MSLRDGEIKAPQADQVAA AKPSGTAEQPPWKMRENPV
Sbjct: 1  MSLRDGEIKAPQADQVAAIAKPSGTAEQPPWKMRENPV 38

The following BLAST results are available for this feature:
BLAST of Carg18856 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026324.14.3e-58100.00hypothetical protein SDJN02_12825, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023514439.14.0e-1998.04multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita pepo sub... [more]
KAG6593984.18.8e-1197.37Multiple organellar RNA editing factor 3, mitochondrial, partial [Cucurbita argy... [more]
BLAST of Carg18856 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18856 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18856 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18856-RACarg18856-RAmRNA