Carg18852 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18852
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 7542384 .. 7545734 (+)
RNA-Seq ExpressionCarg18852
SyntenyCarg18852
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTATATCGGTACACTAGGACTAGGCCTGCTTTATTATCCTTAGCACTGCCGGATTATGTTCGCCATGTAAGCTACACAAACGAACTTCTTGATATTTGTCTTCTTGCAGTGTCCAATATCTGGTGGATGTTTCGCGGCATCTCGCCAAATAGAGGCCAATTCGTTCATTGGAGTTGAAAAGCAAACAGAAACATTGGGACTGATTGGTAACTTATTTTATATTGGCGCTAAATAAAATTTCTGATGAATTTTTCAATTTTCTCGGTTTTGAAATTTTCTTACAGGGATCGGAAAATGAATTTTTCCACGATGCAATTCAGAGTTATGCAGCCAATTTACAAATATTCGATGTGAGTTAAATCTTCACATGTTTATGCATATTTCTTGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCTGCTTCTGCTGTTTTGTTTCTTATTAGAAAGCAAATTCGTTCTTATCGTTATGGAGATTCCATCTCACTCATTAGGCTAATGACAGTCGTTTTCAGGTCGTTTCATTACTATATCATCGTTGTCGTGGAAATGGAGTTTGATTAGTAATGTAGAATCTTGCCTTGGTGGTCCATGGTGTAAAGTATGCGCGCCACTACTGTTGCACGCTAGGTGTTTGATGTAATGTCTCTGCATAATTTGGTTACCCCCCTGCATAGTTCTTTCTTTCTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAACAAGAAATTGAAAAGTCTCAATTAATCATTTCTGGGAATAAGATTCAATTATCTTTAGATCAGTCGGGTGATAATCTCTATTGTAAGCCATAGGTTTGAATCCCATATTACTCTTAAAGCCAGAATTGTCTCTACTCTGCATCGCACATGCTTTGATTCCATATGATACAATTACTTCAAAAGTTAAGTATCAAGAGTCAAAATCAAACCAAAATTTACTTTTTGTTACAACTTAACATCTTTATCTTAACCACCGATTTTGCACCCCATTGGGAAGTAAGCAGATTTGCACAACTTTTTGAATTCTGTTTTGCAAAGAGCAATCAATACATTTTAGGCCTCTAATGATTAAAAGTTATTATTAAATGAAACTGTTGATGAAGCTTGCTTTCTGTTGGCAGAAATGTTGGATTTGAAACTCCGTTGGCACAGGTTCAGTCTCTGTTAATTAGTTGAAGAGTCAGCAATCGGTGGACATAAAGGCACTGATCTTGAACGACAATTCAGTTCTCTAATTGTTTGACATTAATTTGCTGCTTTTCTTGCACACAGGGAAGGAAGCTGGATTCAACGTTTTAATTACTTTTGCTCGTTTGAGTTTGAAACAAGAGGAGTGCCATACCCCAGAAATGGATGACAGGTAAGGCAATCAGGTTTATACAGCTTCTTTGCCTCCCAAACACGCACAAAAGCCTTAAATTTAGCCAAGCCTTTCATTTTTCCTTCTTAATGAAAAACCCAACCCCAAGACAGGAGCATTTATCAGTTGGTTTTGTATGATTTAGCTGCTGCTTAGTAATAATGATATGAAACTGTTTTATACTTGTCAAAACAATATTTACTATTTAGTACAGTAAAGCAGGTTAGATTCTAAGTTTTCAAAGCTTGTTTCCGGTTGAGGTGATCTGAATGATCCTTAACTTGAGAAGTTCTTTGAACGGAGAAATGAAAGAATAAGAACACGTATGTAACAATAGGATTGACGAAAAAAAAAAAATTGAACTATCGTTATATAGAATCAATAAAGGACAATGAAAACATGTAGAGGAAATGAGTTGAAGCCTAATAGAATTTTGGGTTTAGAGGAAATGAATTCAAACTACAGTGATCCTAGTAGAATTAAGTATCTTAAGAATTTCTCTAACAGCAAATATAGTAAGATCTAATAGTTCTGTGAAATTAGCTGCAAGTTGGTAAAACTCTTGATCTCTCCAAAATCTGGCCCTGGCACAAACTTTTTAAAAGAAGAGTTACAACAGGAGAGCTGTAAAGCATCTTCTACATGGTTCAAATTTGGACCACTTTTTGGATATTTTGGTCCAGCATTGCTTTGTACCATAAAGAAGGAAGAATCAGGCTAATGTGATGTGGTATATACCAGATTCCAAGTTCTAGCACATGCCTAAGTTTAGAAGTTATTAATGAAGCTTATCATCGCAAGTTGATAGTACGAACATTTCTTTACGTCATCATGTGTGTAAAAAAAGGTGTGTTCTCAGAAAAAGGAAAAGAAAAACCCATAAATTTGTCTGCTCCGCCACCATAACTGAAGATCTAGCCCTGGAAATGACTATAATGTCCAACATCGTATATGTATGAATGATGATATGAATGAAGAATGTGGTAGTTGTATTGTTGAAGGATTGTTTATTATCAGCCATGCATTTGCATGTACGAATACACTGTGGCGTAGCGAACGGTTCATTTTTGTTGTCTCAATGGCCACACACACACCACACCACACATGGCTGGTCTATTACTGTGCTTCCATATGCCTCTTCCATTTTTTTCGTTATATAGTTTCCGATCATATTCGAAAGGGAAATCTCATCCATTGATATGACACCAAATTCCCCCCACCCAAAAACACGAAACTAAACAAAAATATTTCACTATCTAAATATATTACAAACATATCCCAATGCCAATTAACCCCAATTTACCCGAAATCAAACAAAATAATAGGCTTTAAAGAAAAATGGAGATAATTAATTGTAATATATAGTATACCTTCCTATTATATCCTAAATTATGCTTATATATCATGCTTACTTTTGAAAAATTAAATCTAACTCTGTGTGTCTTGTTTTTGAACAGGCGATTCTTTGAGAAATTCAGGACCTTCCTCGCGTATGGCTGTGTGGATTGCATGTGCGAAGACATTATCGGTGCTTTTGCCTACCAAGTCTTTGGCTTTGATCGACTCCATTTCCCAATCTGTATTGAACACAACTATTAAGATTGAGACCACACATGCCATCTGAGCTGCCAAAAGCCCATAGCAAAGACCCACAAACCCAAACTTCCAAACAAACGCCGACAACACCGCCACCGGCGCCCCCACCATGTAAAATGAATAGAAGTTTATTCCTGCTCCGATCCCTGGCCTTGCACTTCCCCTCAGAATCCCGCAGCTTGTTGTTTGTGGGCAATTTGCCAGCTCGCACAATCCGATTATGGGCAGAACCGCCATTGTCAGCTCTAGAATTCCCTCATCTTTTGTGAAAACGCTTCCCCACGTCCTTCTGCCTATGGTGGTCAATGCGAGCCCCATCAATGAACCCACCAACGCCAATCCTAT

mRNA sequence

ATGCTGTTATATCGGTACACTAGGACTAGGCCTGCTTTATTATCCTTAGCACTGCCGGATTATGTTCGCCATTGTCCAATATCTGGTGGATGTTTCGCGGCATCTCGCCAAATAGAGGCCAATTCGTTCATTGGAGTTGAAAAGCAAACAGAAACATTGGGACTGATTGGGAAGGAAGCTGGATTCAACGTTTTAATTACTTTTGCTCGTTTGAGTTTGAAACAAGAGGAGTGCCATACCCCAGAAATGGATGACAGGCGATTCTTTGAGAAATTCAGGACCTTCCTCGCGTATGGCTGTGTGGATTGCATGTGCGAAGACATTATCGGTGCTTTTGCCTACCAAGTCTTTGGCTTTGATCGACTCCATTTCCCAATCTGTATTGAACACAACTATTAAGATTGAGACCACACATGCCATCTGAGCTGCCAAAAGCCCATAGCAAAGACCCACAAACCCAAACTTCCAAACAAACGCCGACAACACCGCCACCGGCGCCCCCACCATGTAAAATGAATAGAAGTTTATTCCTGCTCCGATCCCTGGCCTTGCACTTCCCCTCAGAATCCCGCAGCTTGTTGTTTGTGGGCAATTTGCCAGCTCGCACAATCCGATTATGGGCAGAACCGCCATTGTCAGCTCTAGAATTCCCTCATCTTTTGTGAAAACGCTTCCCCACGTCCTTCTGCCTATGGTGGTCAATGCGAGCCCCATCAATGAACCCACCAACGCCAATCCTAT

Coding sequence (CDS)

ATGCTGTTATATCGGTACACTAGGACTAGGCCTGCTTTATTATCCTTAGCACTGCCGGATTATGTTCGCCATTGTCCAATATCTGGTGGATGTTTCGCGGCATCTCGCCAAATAGAGGCCAATTCGTTCATTGGAGTTGAAAAGCAAACAGAAACATTGGGACTGATTGGGAAGGAAGCTGGATTCAACGTTTTAATTACTTTTGCTCGTTTGAGTTTGAAACAAGAGGAGTGCCATACCCCAGAAATGGATGACAGGCGATTCTTTGAGAAATTCAGGACCTTCCTCGCGTATGGCTGTGTGGATTGCATGTGCGAAGACATTATCGGTGCTTTTGCCTACCAAGTCTTTGGCTTTGATCGACTCCATTTCCCAATCTGTATTGAACACAACTATTAA

Protein sequence

MLLYRYTRTRPALLSLALPDYVRHCPISGGCFAASRQIEANSFIGVEKQTETLGLIGKEAGFNVLITFARLSLKQEECHTPEMDDRRFFEKFRTFLAYGCVDCMCEDIIGAFAYQVFGFDRLHFPICIEHNY
Homology
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BLAST of Carg18852 vs. NCBI nr
Match: KAG7026320.1 (hypothetical protein SDJN02_12821, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 7.9e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MLLYRYTRTRPALLSLALPDYVRHCPISGGCFAASRQIEANSFIGVEKQTETLGLIGKEA 60
           MLLYRYTRTRPALLSLALPDYVRHCPISGGCFAASRQIEANSFIGVEKQTETLGLIGKEA
Sbjct: 1   MLLYRYTRTRPALLSLALPDYVRHCPISGGCFAASRQIEANSFIGVEKQTETLGLIGKEA 60

Query: 61  GFNVLITFARLSLKQEECHTPEMDDRRFFEKFRTFLAYGCVDCMCEDIIGAFAYQVFGFD 120
           GFNVLITFARLSLKQEECHTPEMDDRRFFEKFRTFLAYGCVDCMCEDIIGAFAYQVFGFD
Sbjct: 61  GFNVLITFARLSLKQEECHTPEMDDRRFFEKFRTFLAYGCVDCMCEDIIGAFAYQVFGFD 120

Query: 121 RLHFPICIEHNY 133
           RLHFPICIEHNY
Sbjct: 121 RLHFPICIEHNY 132

The following BLAST results are available for this feature:
BLAST of Carg18852 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026320.17.9e-72100.00hypothetical protein SDJN02_12821, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18852 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18852 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18852 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18852-RACarg18852-RAmRNA