Carg18850 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18850
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Dynein light chain
Location	Carg_Chr08: 7534536 .. 7535648 (+)
RNA-Seq Expression	Carg18850
Synteny	Carg18850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTACGATTACCAGTCGAAGTATAGAGTAATTCCAAATTTCGAAACGAAAAGGTTGCAGAGATTGTGTGTAAGCTCCTCTTATTGGAGCACCCACCTGCTGAATCGACGAAGATAGGAGAAGAAGCGGAGAAAATGAGCAACGATGCGAAGAGAAGCATTCAAGGAAATCAAATGGTGAAAACTGTTTCGGAAGATCGGAAACCGATGGCGGTGGCGACTACAGGCAAGAAAATCGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGTTGTTAGCTTTCTTTTCTCGATTGCTATTGTTCAAATTTCAAGTACGAATTTCATTTTTGAACTGCTGTTCTTTCTTATGATCCTCAGTTTATTCGGGATTTTGGTACAGGCATTTGAAAAGCATAGTGTAGAGAAAGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGTCGTAATTTCGGTAACTGATCTCTCTATTTTTCTAATCTCTAGCTTATTTTTTTCGTGATTTTGCTGCTTGACAAGCTTCCTTCCGGTTCTAAGTCTGCTGGCTAGCGAAGTTTTAAAATCTGATTGGAACAGATCTAAGCTTGTAGATTTCTTATTAAAAATGTCTGTTCTGGTTAAACTAGTTTAGTAGAAAAAGGAGTGCTATTCCTAGATTGTGGATCTTCAATTTATTCATCTGCATTTGATAAAAATGATGTTCTTCCATTGTATTTCATTGAATTGAGCTGGTTTAGAATTGTAAATAACTTTCCAGGGTCCATGACAATGTTTCTTCTCAATTTTTCCCATTCCCTTGCCTTTTATCCTCGGACCTTAGTTTTTTTCATGAAATTTGGACTCAGAATTACCATGAACTGATCTGTTGTCTCTTCGAGGTGATCACTATTAGTTTCATGAAGGTGGTTGGTTCCCTGAGATAGTTGTCCTGTTAGATTAGTCGAGTTGGAAATAGGTGGATCAAAAGATATAAAAAAGAAACCAAAACTATTTGGCACTTCTAGAAGTTGTCCCTCTTGAACATAAGAACATCTTAACACTTTAAGCTGGTTCT

mRNA sequence

AATTACGATTACCAGTCGAAGTATAGAGTAATTCCAAATTTCGAAACGAAAAGGTTGCAGAGATTGTGTGTAAGCTCCTCTTATTGGAGCACCCACCTGCTGAATCGACGAAGATAGGAGAAGAAGCGGAGAAAATGAGCAACGATGCGAAGAGAAGCATTCAAGGAAATCAAATGGTGAAAACTGTTTCGGAAGATCGGAAACCGATGGCGGTGGCGACTACAGGCAAGAAAATCGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGTTGCATTTGAAAAGCATAGTGTAGAGAAAGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGTCGTAATTTCGGTAACTGATCTCTCTATTTTTCTAATCTCTAGCTTATTTTTTTCGTGATTTTGCTGCTTGACAAGCTTCCTTCCGGTTCTAAGTCTGCTGGCTAGCGAAGTTTTAAAATCTGATTGGAACAGATCTAAGCTTGTAGATTTCTTATTAAAAATGTCTGTTCTGGTTAAACTAGTTTAGTAGAAAAAGGAGTGCTATTCCTAGATTGTGGATCTTCAATTTATTCATCTGCATTTGATAAAAATGATGTTCTTCCATTGTATTTCATTGAATTGAGCTGGTTTAGAATTGTAAATAACTTTCCAGGGTCCATGACAATGTTTCTTCTCAATTTTTCCCATTCCCTTGCCTTTTATCCTCGGACCTTAGTTTTTTTCATGAAATTTGGACTCAGAATTACCATGAACTGATCTGTTGTCTCTTCGAGGTGATCACTATTAGTTTCATGAAGGTGGTTGGTTCCCTGAGATAGTTGTCCTGTTAGATTAGTCGAGTTGGAAATAGGTGGATCAAAAGATATAAAAAAGAAACCAAAACTATTTGGCACTTCTAGAAGTTGTCCCTCTTGAACATAAGAACATCTTAACACTTTAAGCTGGTTCT

Coding sequence (CDS)

ATGAGCAACGATGCGAAGAGAAGCATTCAAGGAAATCAAATGGTGAAAACTGTTTCGGAAGATCGGAAACCGATGGCGGTGGCGACTACAGGCAAGAAAATCGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGTTGCATTTGAAAAGCATAGTGTAGAGAAAGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGTCGTAATTTCGGTAACTGA

Protein sequence

MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

Homology

[Close]

BLAST of Carg18850 vs. NCBI nr
Match: KAG7026318.1 (Dynein light chain 2, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.1 bits (466), Expect = 5.4e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 92

[Close]

BLAST of Carg18850 vs. NCBI nr
Match: XP_022930226.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. NCBI nr
Match: XP_023000010.1 (dynein light chain 1, cytoplasmic-like [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 2.7e-42
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVD+AIVAFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDIAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. NCBI nr
Match: XP_023513722.1 (dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.6 bits (457), Expect = 6.0e-42
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGNQMVK+VSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKSVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. NCBI nr
Match: XP_022959519.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_023547610.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo] >KAG6575076.1 Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.9 bits (442), Expect = 3.3e-40
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Carg18850 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Carg18850 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Carg18850 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Carg18850 vs. ExPASy Swiss-Prot
Match: Q78P75 (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 32 KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 N 93
          +
Sbjct: 64 S 64

[Close]

BLAST of Carg18850 vs. ExPASy TrEMBL
Match: A0A6J1EQC6 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111436746 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.9e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. ExPASy TrEMBL
Match: A0A6J1KH59 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111494322 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVD+AIVAFEKH
Sbjct: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDIAIVAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. ExPASy TrEMBL
Match: A0A6J1H8A5 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111460475 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. ExPASy TrEMBL
Match: A0A6J1L253 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111499159 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGN MVK+VSEDRKP+ +ATTGKKIVIKSADMFGDVQKEA+DVAI AFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLVMATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. ExPASy TrEMBL
Match: A0A1S3C7T8 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103497840 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.4e-38
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 60
          MSNDAKRSIQGN MVK+VSEDRKP AV  TGKKIVIKSADMFGDVQKEA+DVAI AFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKD+AE IKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of Carg18850 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-24
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 6  KRSIQGNQMVKTVSEDRKPM-----AVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKH 65
          K+S+ G    +T+ +DR+       A    GK+ VIKSADM  D+QKEA+++AI AFEK+
Sbjct: 7  KKSVNGGAPAQTILDDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAISAFEKY 66

Query: 66 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 93
          SVEKD+AE IKKEFDK+HG TWHCIVGRNFG+
Sbjct: 67 SVEKDIAENIKKEFDKKHGATWHCIVGRNFGS 98

[Close]

BLAST of Carg18850 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 35/87 (40.23%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 10  QGNQMVKTVSEDRKPMAVATTGKKIV-IKSADMFGDVQKEAVDVA---IVAFEKHSVEKD 69
           +G + V  V  D      A      V I +ADM G +Q  A   A   + + EK S  K 
Sbjct: 92  EGRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFS-SKH 151

Query: 70  VAEYIKKEFDKRHGPTWHCIVGRNFGN 93
           +A  +KKEFDK +GP WHCIVG +FG+
Sbjct: 152 MAFNLKKEFDKGYGPAWHCIVGSSFGS 177

[Close]

BLAST of Carg18850 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 48.1 bits (113), Expect = 4.3e-06
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 33 KIVIKSADMFGDVQKEAVDVAIVAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNF 92
          K +++ +DM   +Q +A+  A  A +   V   K +A +IKKEFD+R+G  W C+VG NF
Sbjct: 5  KAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNF 64

[Close]

BLAST of Carg18850 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 33 KIVIKSADMFGDVQKEAVDVAIVAFEKHSV--EKDVAEYIKKEFDKRHGPTWHCIVGRNF 92
          K  ++  DM   +Q +A+ +A  + +   V     +A +IKKEFD+R+G  W C+VG NF
Sbjct: 5  KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

[Close]

BLAST of Carg18850 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.8e-05
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 33 KIVIKSADMFGDVQKEAVDVAIVAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNF 92
          K V+   DM   ++++A+ +A  A +   V +   +A +IKKEFD+ +G  W CIVG +F
Sbjct: 5  KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64

The following BLAST results are available for this feature:

BLAST of Carg18850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026318.1	5.4e-43	100.00	Dynein light chain 2, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022930226.1	2.1e-42	98.91	dynein light chain 1, cytoplasmic-like [Cucurbita moschata]	[more]
XP_023000010.1	2.7e-42	97.83	dynein light chain 1, cytoplasmic-like [Cucurbita maxima]	[more]
XP_023513722.1	6.0e-42	97.83	dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959519.1	3.3e-40	93.48	dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_023547610.1 dyne...	[more]

BLAST of Carg18850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q22799	1.4e-17	63.93	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q3MHR3	1.4e-17	65.57	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	1.4e-17	65.57	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	1.4e-17	65.57	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]
Q78P75	1.4e-17	65.57	Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 S...	[more]

BLAST of Carg18850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQC6	9.9e-43	98.91	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111436746 PE=3 SV=1	[more]
A0A6J1KH59	1.3e-42	97.83	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111494322 PE=3 SV=1	[more]
A0A6J1H8A5	1.6e-40	93.48	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111460475 PE=3 SV=1	[more]
A0A6J1L253	1.0e-39	91.30	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111499159 PE=3 SV=1	[more]
A0A1S3C7T8	7.4e-38	89.13	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103497840 PE=3 SV=1	[more]

BLAST of Carg18850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15930.1	2.7e-24	58.70	Dynein light chain type 1 family protein	[more]
AT5G20110.1	3.3e-06	40.23	Dynein light chain type 1 family protein	[more]
AT1G52240.2	4.3e-06	40.98	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	2.1e-05	37.70	Dynein light chain type 1 family protein	[more]
AT4G27360.1	2.8e-05	37.10	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 29..92 e-value: 1.2E-21 score: 87.9
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 33..91 e-value: 3.4E-22 score: 78.6
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 6..91
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 30..92 e-value: 3.3E-24 score: 86.9
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 30..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	PANTHER	PTHR11886:SF95	DYNEIN LIGHT CHAIN	coord: 6..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18850-RA	Carg18850-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding