Carg18840 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18840
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 7473646 .. 7476890 (+)
RNA-Seq ExpressionCarg18840
SyntenyCarg18840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTTGCATTTTTAGCGGATATGATCTCTTAGGCGCTCTCGATCCGACTTCTTCTCTTTCTCCTCATTCAGGTTTCCTTCTCTCTTATCATCTGTAATTTGATTTGTAAATTCGTGTTTAAAATCTGCACTGCGTTTGCATTTTGATCTGATCTGTTTCCGTCGATGTTGTTCCTTTCTTTAGGAAGAGATTGAGATTCCGATTGGCTTGAAATCGCGGTGTTCTACTCGGAAGCTTCCTTGAGTTTTCTGTTCATCGATGTTCTTGTGCACTTTGAAGGATACAAGAAAACAGAGGACGATTCATCGGAGATTCGAGTGAGTTGATTCTTAACCGACTTGAATTTACTTCTTAAACATGTTTGTGAATATGAAGCTACTGAAGCTCGAGATCAGATATTGTGTTTCTAATTTATGAATGAAAATTTATTGGATGCCAGAACCAAACACTAATTCTTTAAAAAGTCGATCGTTCAAACATGCGGTAGTTCACTACGTACTAACGAATTAAATTGAACTAGAGGAGGTAGATGTAACTGTAATAGCTATTATATTGTTAAGTATGTTATGTTCTGTTGAGTTGAAAGTCTGTTTAGTCATTATGATTTCTTAGTCTATAAATATCAGTTGTAAGGCATCTTTTTTAAAAAAATGAAGAGTATCTGTACGATTCGTGAAGATTATTTCATGATATCGGCGCTTTTTTTTTTCTTTTTTTTTCTTTTTTTGTGAATAATGTCGTTTGATCCTTCTTCAAAGCGTCCAGTTCGTTTCCACTTGTCATCTTCGTTCATTCCTTTGCTATAGTTGATTCCACCGATCGTGACATGCGTTCACCGATTTTTGTCCTTTCAAACATTTGTGTACTTGTATCCGTATGACTGGATTCCTCGAATCTTCGCCTCAACAATCTTAGTTCCAGACTACTGCCACATACTTTTCCGATAGAACTTCTTCTAAGCAAATCCTCTGTCTGAAGATTACCACATCTCATGCACTCATGATTCTTATCAACACTACGTTATCGCCTCCAGCCCTTGCGTATGTCGTTGGCCGTGAAACATCATGTCAGATGTAGGAAACTCTAGAAAAACACTATTCTTCAACCTCGCGTGCCAATTTTGTCAATCTATGCTTTAAAAGGGATGCCTATTGAATATAATACATTTCGTACATCTTTACGTACGTGATCGTACTTTGTTTGTTTTGATGAACTTCTTGTTCTTCTTGTCATTGAAGAATCTGCCATCGGGATATAGTTTAAGCGTAACCAGAATTTTACTTCACTGTCTACTCTTCTTACTCGAACAGGATCCTCTTAAGAAATCAGAATCTAATCCTAGTGTCTATCGTAACTGAGGTGATAATGGTAGAGGACGTGGTAATTGGGTTAAACCTGGAAATTATATGCCCTACGGAAGTTGGTCGAGGTTTTGGTCCTCCTCAAGATTCTTCTAATAAATTTCAGTTGAATCAAACAGCCTCAAAGATACATATTATGTGTTGAGGATGGTTGGAGTCCCATATTGATTGTTATAATCGCATGAACAACAGCTTCCAAGGTCCACATCCACCATTTCAGCTTGCTGCTATGGTGGTTTCGCAGAACTATAATGTTGTTGCAAATACATCTACTGTTTCCAATTCTTCCATCGTGTTACTTCCGATTTAAATAATTTTTCTGTTGCAAATGAATAGTCTGGAGAGGAACAAGTAGCTGTAGCCTGTAGGCAATGGTCAATCCCTCCTAATAAATTCAGGTCGTGTTATTCTTCCAACTCCCTTAAAACTTCTTGATCTTATTCGAGTTCCTCTCATTTCTTCCAATCTTCCTTCTGTTAATCGCTTGTGTGCTGACAAAAATTATATTTTAGTTTCCGAAAATGGCTTTTTCCTCCTTTAGGACAAGTCTTCGAGCAAGATTCTTCACCGAGGTCCCAACATTAATGGCCTTTATCCTATTCATCCTGCAAAATATACTTCCTTTCCAAGTCCACTTAGTATCGTTCGTGTTGGAACAGAACATCAACTTCAGTCTAGCATAAACTAGTCAGGCATATCCTAGAAGTTACTTCGATTTTAATGACTCAATTTTCTCTTCCTAACAACTTTTGGCCTTTCGCTTTTGCTGCTGCTGTCTTTTTAATCAATCCTCTTCATACCCCAACTCTAAACCTTCTTTTTAGCCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTCCATAAGCCACTCGATTATACAATTCTTAAAACCCTTGGTTGTCTGTTATACATTTCTTAGGGCCTACACTTCAGCTCAAAAGAACCCGTTTAGTTTTACTTGATTATCCTAAAGACTTTGTGGGATATCTGTGTTACAAAATGAGCAATAGGCGTCTCTATACATCTAGGATAATCATGTATACTTTGAGGGATATCTTGTGCATAGTAATCGTTCTATTATTATTATTTTTTTCTTTCTTTCTTTTGATTCTCTTTTTTCTTTTCTCCTTCCAAATTACCACTGAGGTTATTAATTTTGAATTTCCCACTCTGCTGTTCTTGCTAACACTTCTGCAGCCACTGAGTTGACTAGTGGATCACATATGGTAACTGATGTTTAAGATCCTTGTGTTGTTCAAACTGAAATTGTTGCAACGGACGCTATTCGGCCTTCTCCATTTAATACTAATGTTTCATCATCTTACTTGCCTCTTGTGCATGGTAATCGTTCTATGAAAACCATATCAAAGCACAAAGTTTAGTTGCTACTACCAATGTTTGATCTGATTTGGAACCATCCTCTTTCACAAAGCTTTCTTAAATTTTCGGTTAGGCTAACACTTTGGAATATTAGTTTTTATATTGTTCTCTTTGAGCTTTTCTTCTAGATTTTTAAAACACCTCTATCAAGGGGAAAATGACTTCTTTCCCGGGCAAAAGTATTATTGTCGAAGGGACCAATTCTAATACTTTTTTTGCTCATGATATATTCTCTGATTGGGCTGCTGATCATCTTGATTGCTGTTTAACTACTGGCTTTGTGATCTATCTAGGCTCCATAAATCTCGCAAGCTACCGGAAGCTATCAGACCTATTACGAATTCACGATTGCCAAACAGGAGTGCTCAATCACTTGATCCATTTCAGGTACTAAGTTTTGTTATCATTAATAAAATTTGAATTCTATTTTTTAATTATTTTGTGCATGTGCGTGATACTCAATTGATTGCTTGAATTTAGTTTACATACTTTGG

mRNA sequence

CTTTTTTGCATTTTTAGCGGATATGATCTCTTAGGCGCTCTCGATCCGACTTCTTCTCTTTCTCCTCATTCAGGATACAAGAAAACAGAGGACGATTCATCGGAGATTCGAATTACCACATCTCATGCACTCATGATTCTTATCAACACTACGTTATCGCCTCCAGCCCTTGCGTATGTCGTTGGCCGTGAAACATCATGTCAGATGCTCCATAAATCTCGCAAGCTACCGGAAGCTATCAGACCTATTACGAATTCACGATTGCCAAACAGGAGTGCTCAATCACTTGATCCATTTCAGGTACTAAGTTTTGTTATCATTAATAAAATTTGAATTCTATTTTTTAATTATTTTGTGCATGTGCGTGATACTCAATTGATTGCTTGAATTTAGTTTACATACTTTGG

Coding sequence (CDS)

CTTTTTTGCATTTTTAGCGGATATGATCTCTTAGGCGCTCTCGATCCGACTTCTTCTCTTTCTCCTCATTCAGGATACAAGAAAACAGAGGACGATTCATCGGAGATTCGAATTACCACATCTCATGCACTCATGATTCTTATCAACACTACGTTATCGCCTCCAGCCCTTGCGTATGTCGTTGGCCGTGAAACATCATGTCAGATGCTCCATAAATCTCGCAAGCTACCGGAAGCTATCAGACCTATTACGAATTCACGATTGCCAAACAGGAGTGCTCAATCACTTGATCCATTTCAGGTACTAAGTTTTGTTATCATTAATAAAATTTGA

Protein sequence

LFCIFSGYDLLGALDPTSSLSPHSGYKKTEDDSSEIRITTSHALMILINTTLSPPALAYVVGRETSCQMLHKSRKLPEAIRPITNSRLPNRSAQSLDPFQVLSFVIINKI
Homology
[Close]
BLAST of Carg18840 vs. NCBI nr
Match: KAG7026308.1 (hypothetical protein SDJN02_12809, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.0e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   LFCIFSGYDLLGALDPTSSLSPHSGYKKTEDDSSEIRITTSHALMILINTTLSPPALAYV 60
           LFCIFSGYDLLGALDPTSSLSPHSGYKKTEDDSSEIRITTSHALMILINTTLSPPALAYV
Sbjct: 1   LFCIFSGYDLLGALDPTSSLSPHSGYKKTEDDSSEIRITTSHALMILINTTLSPPALAYV 60

Query: 61  VGRETSCQMLHKSRKLPEAIRPITNSRLPNRSAQSLDPFQVLSFVIINKI 111
           VGRETSCQMLHKSRKLPEAIRPITNSRLPNRSAQSLDPFQVLSFVIINKI
Sbjct: 61  VGRETSCQMLHKSRKLPEAIRPITNSRLPNRSAQSLDPFQVLSFVIINKI 110

The following BLAST results are available for this feature:
BLAST of Carg18840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026308.14.0e-53100.00hypothetical protein SDJN02_12809, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18840 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18840-RACarg18840-RAmRNA