Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTTCCAGCAAAATCAGAGCCAGAAACTACCAGCATCAACTCATTGGCAGATGAACTTCCATGGCTGCAACAAGTTTCAATGGATAGCCCTCCAGAAATAAAAGATCCAAGTGACTCAAAAGACATAAGCCTTGAACTTGTTTCTCTCGATCTAAGCCTCTCAAACAAGGATTTGGGTGGGAGTTTGCCAGAAGAATTGAACCTAATTGACTTTTTTTGTGCTGATAATTTACCAAACTACATTTCTTACGAAGGTACAGAAGCAGCAGCTAAGCCTCGAGTTTTCTCCTGCACTTTTTGCCCAAGGGAGTTCTTAAGCCATTTTCCCATGCACCTGTTTTTGGTTCCTTTCATCCTTTTGAGCCTGAGGTCTGGGACAGACAGCCTCTTTACACGCAAGTGGCAACTGGCAAATGGCCCTTGTCGAAGAATTATCGGTCGGGGGCCTCACCGGTACTGCCATCAAGCAGCGGAGCAACAGGTTTTGATGGTGGTTGGAGGCTGTCGTCAAACAGTGACACATTGTTGGATTCAAAGCGTCCTCATAATGAACTGCACAAGCTAGACTGTTTAGACTTGTCTTTGAGGCTGTAA
mRNA sequence
ATGAGTCTTCCAGCAAAATCAGAGCCAGAAACTACCAGCATCAACTCATTGGCAGATGAACTTCCATGGCTGCAACAAGTTTCAATGGATAGCCCTCCAGAAATAAAAGATCCAAGTGACTCAAAAGACATAAGCCTTGAACTTGTTTCTCTCGATCTAAGCCTCTCAAACAAGGATTTGGGTGGGAGTTTGCCAGAAGAATTGAACCTAATTGACTTTTTTTGTGCTGATAATTTACCAAACTACATTTCTTACGAAGGTACAGAAGCAGCAGCTAAGCCTCGACCTGAGGTCTGGGACAGACAGCCTCTTTACACGCAAGTGGCAACTGGCAAATGGCCCTTGTCGAAGAATTATCGGTCGGGGGCCTCACCGGTACTGCCATCAAGCAGCGGAGCAACAGGTTTTGATGGTGGTTGGAGGCTGTCGTCAAACAGTGACACATTGTTGGATTCAAAGCGTCCTCATAATGAACTGCACAAGCTAGACTGTTTAGACTTGTCTTTGAGGCTGTAA
Coding sequence (CDS)
ATGAGTCTTCCAGCAAAATCAGAGCCAGAAACTACCAGCATCAACTCATTGGCAGATGAACTTCCATGGCTGCAACAAGTTTCAATGGATAGCCCTCCAGAAATAAAAGATCCAAGTGACTCAAAAGACATAAGCCTTGAACTTGTTTCTCTCGATCTAAGCCTCTCAAACAAGGATTTGGGTGGGAGTTTGCCAGAAGAATTGAACCTAATTGACTTTTTTTGTGCTGATAATTTACCAAACTACATTTCTTACGAAGGTACAGAAGCAGCAGCTAAGCCTCGACCTGAGGTCTGGGACAGACAGCCTCTTTACACGCAAGTGGCAACTGGCAAATGGCCCTTGTCGAAGAATTATCGGTCGGGGGCCTCACCGGTACTGCCATCAAGCAGCGGAGCAACAGGTTTTGATGGTGGTTGGAGGCTGTCGTCAAACAGTGACACATTGTTGGATTCAAAGCGTCCTCATAATGAACTGCACAAGCTAGACTGTTTAGACTTGTCTTTGAGGCTGTAA
Protein sequence
MSLPAKSEPETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSLPEELNLIDFFCADNLPNYISYEGTEAAAKPRPEVWDRQPLYTQVATGKWPLSKNYRSGASPVLPSSSGATGFDGGWRLSSNSDTLLDSKRPHNELHKLDCLDLSLRL
Homology
BLAST of Carg18739 vs. NCBI nr
Match:
KAG7014179.1 (hypothetical protein SDJN02_24353, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 345.9 bits (886), Expect = 2.0e-91
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query: 1 MSLPAKSEPETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDL 60
MSLPAKSEPETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDL
Sbjct: 1 MSLPAKSEPETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDL 60
Query: 61 GGSLPEELNLIDFFCADNLPNYISYEGTEAAAKPRPEVWDRQPLYTQVATGKWPLSKNYR 120
GGSLPEELNLIDFFCADNLPNYISYEGTEAAAKPRPEVWDRQPLYTQVATGKWPLSKNYR
Sbjct: 61 GGSLPEELNLIDFFCADNLPNYISYEGTEAAAKPRPEVWDRQPLYTQVATGKWPLSKNYR 120
Query: 121 SGASPVLPSSSGATGFDGGWRLSSNSDTLLDSKRPHNELHKLDCLDLSLRL 172
SGASPVLPSSSGATGFDGGWRLSSNSDTLLDSKRPHNELHKLDCLDLSLRL
Sbjct: 121 SGASPVLPSSSGATGFDGGWRLSSNSDTLLDSKRPHNELHKLDCLDLSLRL 171
BLAST of Carg18739 vs. NCBI nr
Match:
KAG7014175.1 (Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 298.5 bits (763), Expect = 3.7e-77
Identity = 166/257 (64.59%), Postives = 168/257 (65.37%), Query Frame = 0
Query: 1 MSLPAKSEPETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDL 60
MSLPAKSEPETTSINSLADELPWLQQVSMDSPPE+KDPSDSKDIS ELVSLDLSLSNKDL
Sbjct: 1 MSLPAKSEPETTSINSLADELPWLQQVSMDSPPEVKDPSDSKDISPELVSLDLSLSNKDL 60
Query: 61 GGSLPEELNLIDFFCADNLPNYISYEGTEAAAKPRP------------------------ 120
GGSLPEELNLIDFFCADNLPNYISYEGTEAAAKPR
Sbjct: 61 GGSLPEELNLIDFFCADNLPNYISYEGTEAAAKPRVFSCTFCPREFLSSQALGGHQNAHN 120
Query: 121 ------------------------------------------------------------ 172
Sbjct: 121 RKRKKAKPAHKLVTNSTDCKHSSVSSLPFQGFNRSLGIQMHSMIHKPFSHAPVFGSFHPF 180
BLAST of Carg18739 vs. NCBI nr
Match:
KAG6575625.1 (Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 252.3 bits (643), Expect = 3.0e-63
Identity = 142/229 (62.01%), Postives = 142/229 (62.01%), Query Frame = 0
Query: 29 MDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSLPEELNLIDFFCADNLPNYISYEGT 88
MDSPPEIKDPSDSKDIS ELVSLDLSLSNKDLGGSLPEELNLIDFFCADNLPNYISYEGT
Sbjct: 1 MDSPPEIKDPSDSKDISPELVSLDLSLSNKDLGGSLPEELNLIDFFCADNLPNYISYEGT 60
Query: 89 EAAAKPR----------------------------------------------------- 148
EAAAKPR
Sbjct: 61 EAAAKPRVFSCTFCPREFLSSQALGGHQNAHNRKRKKAKPAHKLVTNSTDCKHSSVSSLP 120
Query: 149 ---------------------------------PEVWDRQPLYTQVATGKWPLSKNYRSG 172
PEVWDRQPLYTQVATGKWPLSKNYRSG
Sbjct: 121 FQGFNRSLGIQMHSMIHKPFSHAPVFGSFHPFKPEVWDRQPLYTQVATGKWPLSKNYRSG 180
BLAST of Carg18739 vs. NCBI nr
Match:
XP_023548450.1 (zinc finger protein 3-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 214.2 bits (544), Expect = 9.1e-52
Identity = 128/230 (55.65%), Postives = 133/230 (57.83%), Query Frame = 0
Query: 29 MDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSL-PEELNLIDFFCADNLPNYISYEG 88
MDSPPEIKDPSDSKDIS LVSLD SLSNKDLGGSL PEELNLIDFF ADNLPN S+EG
Sbjct: 1 MDSPPEIKDPSDSKDISPGLVSLDPSLSNKDLGGSLMPEELNLIDFFSADNLPNDTSHEG 60
Query: 89 TEAAAKPR---------------------------------------------------- 148
EAAAKPR
Sbjct: 61 KEAAAKPRVFSCNFCPREFSSSQALGGHQNAHNRKRKMAQTGHKLVTNSTDCKQSSVSSL 120
Query: 149 ----------------------------------PEVWDRQPLYTQVATGKWPLSKNYRS 172
+VWDRQPLYTQVA+G WPLS+NY+S
Sbjct: 121 PFQGFNRSLGIQMHSMIHKPFSHAPVFGSFRSFESKVWDRQPLYTQVASGIWPLSENYQS 180
BLAST of Carg18739 vs. NCBI nr
Match:
XP_038896249.1 (zinc finger protein 3-like [Benincasa hispida])
HSP 1 Score: 178.7 bits (452), Expect = 4.2e-41
Identity = 122/259 (47.10%), Postives = 129/259 (49.81%), Query Frame = 0
Query: 1 MSLPAKSEPETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDL 60
MSLPAKSE +TTSINSL DELPWLQ DPSDSKD S ELVSLDL LSNKDL
Sbjct: 1 MSLPAKSELQTTSINSLVDELPWLQ-----------DPSDSKDTSPELVSLDLKLSNKDL 60
Query: 61 GGSL-PEELNLIDFFCADNLPNYISYEGT-EAAAKPRP---------------------- 120
GGSL PEELNL+D F ADNLPN SY+G EAAAKPR
Sbjct: 61 GGSLMPEELNLVDSFDADNLPNDRSYQGVEEAAAKPRVFSCNYCPRKFFSSQALGGHQNA 120
Query: 121 ------------------------------------------------------------ 172
Sbjct: 121 HSRERKIAKTGNKLVTNSTGSKYSSVPSLPLQGFNGSVGIQARSLIHKPFSHSPFFGSLH 180
BLAST of Carg18739 vs. ExPASy TrEMBL
Match:
A0A1S3CEM5 (zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103500023 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 8.6e-32
Identity = 105/241 (43.57%), Postives = 116/241 (48.13%), Query Frame = 0
Query: 9 PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSL---P 68
PETT INSLA+EL WLQ DP+DSKD S ELVSLD LSN +LGG L
Sbjct: 3 PETTRINSLAEELTWLQ-----------DPNDSKDTSPELVSLDFRLSNTNLGGGLTQEE 62
Query: 69 EELNLIDFFCADNLPNYISYEGTEAAAKPRP----------------------------- 128
EE NLIDFF ADNLPN SYEG EAAA+PR
Sbjct: 63 EEPNLIDFFDADNLPNGSSYEGVEAAARPRVFSCNYCPRKFVSSQSLGGHQNAHSRERKM 122
Query: 129 ----------------------------------------------EVWDRQPLYTQVAT 172
E +RQ LY Q+A
Sbjct: 123 AKTSSKMVTNSTGCKYSKSLGIQARSMIHKPFSYSPVFGSFHPFQLEAKNRQSLYEQLAA 182
BLAST of Carg18739 vs. ExPASy TrEMBL
Match:
A0A5D3CH42 (Zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001750 PE=4 SV=1)
HSP 1 Score: 145.2 bits (365), Expect = 2.5e-31
Identity = 104/241 (43.15%), Postives = 115/241 (47.72%), Query Frame = 0
Query: 9 PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSL---P 68
PETT INSLA+EL WLQ DP+DSKD S ELVSLD LSN +LGG
Sbjct: 8 PETTRINSLAEELTWLQ-----------DPNDSKDTSPELVSLDFRLSNTNLGGGFTQEE 67
Query: 69 EELNLIDFFCADNLPNYISYEGTEAAAKPRP----------------------------- 128
EE NLIDFF ADNLPN SYEG EAAA+PR
Sbjct: 68 EEPNLIDFFDADNLPNGSSYEGVEAAARPRVFSCNYCPRKFVSSQSLGGHQNAHSRERKM 127
Query: 129 ----------------------------------------------EVWDRQPLYTQVAT 172
E +RQ LY Q+A
Sbjct: 128 AKTSSKMVTNSTECKYSKSLGIQARSMIHKPFSYSPVFGSFHPFQLEAKNRQSLYEQLAA 187
BLAST of Carg18739 vs. ExPASy TrEMBL
Match:
A0A0A0K8M2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 PE=4 SV=1)
HSP 1 Score: 143.3 bits (360), Expect = 9.5e-31
Identity = 106/242 (43.80%), Postives = 115/242 (47.52%), Query Frame = 0
Query: 9 PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSL---- 68
PETTSINSLA ELPWLQ DP+DSKD S ELVSL+ LSN +LGG L
Sbjct: 3 PETTSINSLA-ELPWLQ-----------DPNDSKDTSPELVSLEFRLSNTNLGGGLMQEE 62
Query: 69 PEELNLIDFFCADNLPNYISYEGTEAAAKPRP---------------------------- 128
EE NLIDFF ADNLPN YEG EAAA+PR
Sbjct: 63 EEEPNLIDFFYADNLPNGSFYEGVEAAARPRVFSCNYCPRKFVSSQSLGGHQNAHSRERK 122
Query: 129 -----------------------------------------------EVWDRQPLYTQVA 172
E RQ LY QVA
Sbjct: 123 IAKTGNKMVTNSTACKYSKSLGIQARSMIHKPFSHSSVFGSFHPFQLEAKSRQFLYEQVA 182
BLAST of Carg18739 vs. ExPASy TrEMBL
Match:
A0A6J1DKR7 (zinc finger protein 1-like OS=Momordica charantia OX=3673 GN=LOC111021988 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 102/261 (39.08%), Postives = 118/261 (45.21%), Query Frame = 0
Query: 1 MSLPAKSE--PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNK 60
MS+PAKSE PETTSI+ DELPWL+QV SKDIS E VSLDL LSN+
Sbjct: 1 MSVPAKSEPCPETTSISLSTDELPWLRQV-------------SKDISTE-VSLDLRLSNE 60
Query: 61 DLGGSL-PEELNLIDFFCADNLPNYISYEGTEAAAKPRP--------------------- 120
DL GSL PEELNLID F A LP S +G E AKPR
Sbjct: 61 DLVGSLMPEELNLIDSFDAICLPG-TSSQGKE-VAKPRVLSCNYCQRKFFSSQALGGHQN 120
Query: 121 ------------------------------------------------------------ 172
Sbjct: 121 AHSRQRKLAKIGRKLDHVSSEYKFSSVSSISLHGFNRSLGIQAHTMIQKPCASHAPIFGS 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7014179.1 | 2.0e-91 | 100.00 | hypothetical protein SDJN02_24353, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG7014175.1 | 3.7e-77 | 64.59 | Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
KAG6575625.1 | 3.0e-63 | 62.01 | Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_023548450.1 | 9.1e-52 | 55.65 | zinc finger protein 3-like [Cucurbita pepo subsp. pepo] | [more] |
XP_038896249.1 | 4.2e-41 | 47.10 | zinc finger protein 3-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3CEM5 | 8.6e-32 | 43.57 | zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103500023 PE=4 SV=1 | [more] |
A0A5D3CH42 | 2.5e-31 | 43.15 | Zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45... | [more] |
A0A0A0K8M2 | 9.5e-31 | 43.80 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 P... | [more] |
A0A6J1DKR7 | 1.1e-23 | 39.08 | zinc finger protein 1-like OS=Momordica charantia OX=3673 GN=LOC111021988 PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |