Carg18734 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18734
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	Carg_Chr17: 7189782 .. 7194071 (+)
RNA-Seq Expression	Carg18734
Synteny	Carg18734

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCATGGCGTTTCTCTCTTCTCCACCGCACATTCCCTCTCTGGTTCGACCGTGTCACAGAAATTTTCTATTCTCTCCTATTTCCTCTTCCTTCAGTGCTCTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTAGCGACTTCGGGATTTTGCTTTAGGATACACTGCAGTGACAAAGAACGAGCTGCACCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCTAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTGGAGGATGGAAAGATGCGCTTGGAGATTGATTTCCCGTAATCTTTCTTTTTCTCTATGATTATGGATGATCTTACTTCTCAATCCTATTAGGTTCTTTCTTTTGAGAAATACTGCTCATTCCCGCAATTTGTTACTTAGCAAGTTAGCATAAGAGTTACTACTACCATGCTATACGTTTGTTTCGTTTTAATCCCCCTACCTCGACTATCGTAATCGGTTGTGCGTTTGTTAGGATAATCTGGTGAGTTTCATTTCGGAGCTTTCTTCTTGCAGATGACCAATTTAAAATTTGAAAATCTAGATTCTAACCGCAGTACGTATAAGCAAATTATTTCTGAATGTCTTTTCAACTTACGATGCTTTATTGTCAGAATGTTGTTCATTCTGGAATTTACAAGTTGTTCTTCTGTGTATAATTCTCATTATTTTCTAACCCTCGTTTTGTTTTGTCTTGTTTTTTCTTTTTTCCCTTTTGGTGGGATTTCCTATATTCAGACCCCTGCCTAGCAACATTTCCTCGTACAAGGTATCTTTCTCCGATTTGTTCTTGATGGAATCTGCTGCTCAGAACATTATGTTTTCTCATTTATTAAAATATTCCCCATATAGGCCGTTTGTTTTCTCCTCTATTCTGGTTTTGCACCTCAATGTGTTATATGCAGATGTTCATATGAATATTCTGGTTCGTTGACATGACATTTTTTCCCCTTTTTTCTTGAGGATATTTCCAAACATGTAAAGGGGTCCTTGGATGATTTCATTGATGCAAATAATCAACTTGCAATGAACCTCAAAGAAAAGAGGAGAAACTAGACCTGCTTACATATTTAGTAGTTCATCGTGAATCTTCATACAATGTACCTCGCAGCTCATATTAACTCTCGATTATGAATGTACTCAGTCAACATAGGGTCATTTTATAATTTAACTCGGTTACATTTGCGTATTTTTCTTGTATGAACAAGCCGTGAATATAGAATATAGTATTCCTTGCGATGAAACCAGTTGAAAAGTTGCGAATAGTATATTACATAGGTTACATTCAGAATTATGTTAGTTTAGGTTCTTTTCAATATTCTGGATTGTTGATAGCACATGTTCATTTGATTTGAGAAAACTTTTAAATATGTCAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTAAGCAACTATATATACTCACATATATATTGCAAACCTCTTCTGAAGTTAGTGCAGCTGTTAAGTACTCGTGTTGTAACTTTAGGTATTTCCAGATAAACCAGACAAAGGCAGAGCTTCACAGTTGTTCAAAACAGCTCTCGACTCGGTAACAAGTTAACTCTTTAAAGAAAAAATTTCTTTTGTCCGATGTAGATCGTACCTGCTTGACATTTTTTTGCCTTGTTGGTAAGAAGTAAATATTTTGTTTACAATAGAAATGCGGAGCTAATCGAGGGCATGCTTGTCCACACAATATAAATCCTGGTCTCCGTTTTATGTGCTTTTTTCATTTGTTTTTGCCTTTTATCTCTCAGATTGATGGAATAACCATAAGTTCCCTAGATGATGTTCCTGCTGGACCTGTCACTTCTTTTTTCAGATCTATTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTTGGTTATATACGCATGGATCTCAGACGATGTTTCACATTCTTGTCCTCTTTTTTATTCTGTGCACGTCATGGCCATGTATTTCGCTATTAAGTGCATTCTGCAAGTAGATGACCCTAATCATTGCGGCAAGACTGCAACTTACACTCATAGACTGTAATAACCTTGATTTAGAAAAGGTAAATGGCAGGAAAAAAAAGAAAATTTCAAAGAGAAAAAAGAAAAGAAAAGAAATACCATATGAAAAGTGATTGAACTTAATTCTCATATGAGAAAGCTATTTATAAACTTAAAAACTGCCTCTTCCTATTCATTCCCTTCACTTTTGTGGATATAAACATTTTTCTTCTTCAGGGCCTTACTATGTTATATTTACAATCATTTATCTTTTTATCTGCTTCCTTCCAGGACCAAACATTCTCATTTAATGATTACTCAATCTTCACAATGCATCTTAATTGCAGGTCGTTGGACTTCTAGTGAACCTCCATCTCTGTACATATTTATTAATTGCAGCACGCGTGAACTTGCAATGATAGAGAAGTATGTGGTATGATGTCTATGCTAATTGCAAGATAGCAATTTGCTTGGTTGAACAAATGGCATATCTTGATTAGCTTCTGATTTGAAGTTATCATGATTTCTTCTCGAGTTGGTTCTATTATGCTAATTTCTGTTTTTTTCTTCAGTACAAATTATAAAAAATTTCTTAAAAAGTATCCCTCCCATTGATTATGATTCAGCTGTCTACAGAATACTAGTACTCTAGAGGACGTGTATGCTCTTGTTTAGTTGGTATTACCATTGTAGAACTGCTATCATGCCATCTTTGATGGTGGATTCGATGGTTATATAATACTTTTTCCATATTGAGGATGTGAAAGTACTGAATAAGACCTGTTTATGACATTCTAAGTGACATTTTTATACACCAAGTTAACTTCATTTGGCTTGGTCTAATTAGTTTTTGCCTGTACTCCCGGTGACTCATTTTGGGATTTGCAGGAAACTTTTGCTTCGTCAATCCCCACCCTGATGTTTAATCTAGAACTTGAAACCTTGCGGTAATGGTGCTCCTCCTCATCCATCTTTGATAGATATTGAGTTCATCATATGCAACTATTGATCATAAGTTTGAAAACTTACAGTGCAGACTTGGGCTTACTGGGATTCCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCGGTGTTTTACATTAGAATCAGAGAGTATTCTAAGGTCTTGGATCTCATCTTGAAACCCTTTTTAATTTTACATTATTATTATTATTTGGTGACTAAATTCTCTTTTCTTGGTTCTCTTTGGGGGTATCAAGACAGTACCAATAGCACCTTATATTGTTAATTACAGTGGAGCATTGTTTCGTCAATACCCTGGTGCGTATACTGTTTCATTGAACTTTCCGTTGGATAATCTTGTTTTTTAGTTCTCTTGATATTTTTATCAGTCCAAATTGGTTACCAACCTCTAAGTTTCGCTAGCTAAGCTTATAGATTCATCTGCTTTTACATCAATATTTTGTCATTGAAATAGGTTATGTGATCTATATATCCACATCTATTCATCCTTCATAATACTTTCAGGACCTTGGCAAGTGATGTTAAAACAAGCAGATAATTCTTATGCTTGCGTCGCAGAGAGTGAGACGAGGTTCACCCTTGGTGAAGTATGTAAAATTGAAGTACTTTTAGCACTTAATCATTTGTCTGGTGTTTCTGGACTAACTGTTGCTTGTAATTTAGACCAAAGATGAACTACTAAGGGTCCTTGGACTACAGGAAGAACAAGGAAGCTCATTAGAATTTCTTCGCAGGGGCTACAAGGTTTCCTCTTCCTTCTGTGTTATCTCTTGTTTGCTCCACCAATTTACCAGCAGTTTGAAGAGAAATCCGCATCATATTTTGTTCTCATTTTTTAGGAAATGATTTTACTAAGAACCTAAAATTTTAGGGTCGAGTTGAACTAAGCTCGAGTTGACACATCCAATATAATTAGAGAAAGGGTGGGAGATAGGATGTGTAACTCATGAAATCTAGTCTACTTTTGCAGGCTGCCACTTGGTGGGAAGAAGATAATGACTCTGAAGTATCTTCGGCATGGCGTAGTTGAGCACAGCTCGAGCGTCGATTATTTCCTCTTCAAACACTTGCATTTTCGGTGAGACGATATCGATGATCTCAAACATGAGAGGCCAAGATGACCCTATTTCTAAAAGACTCTCGTGGCTTTCCCTTTGCACAATCATTTAAAAGG

mRNA sequence

ATGGCGATCATGGCGTTTCTCTCTTCTCCACCGCACATTCCCTCTCTGGTTCGACCGTGTCACAGAAATTTTCTATTCTCTCCTATTTCCTCTTCCTTCAGTGCTCTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTAGCGACTTCGGGATTTTGCTTTAGGATACACTGCAGTGACAAAGAACGAGCTGCACCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCTAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTGGAGGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCCTCGTACAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTATTTCCAGATAAACCAGACAAAGGCAGAGCTTCACAGTTGTTCAAAACAGCTCTCGACTCGAAATGCGGAGCTAATCGAGGGCATGCTTGTCCACACAATATAAATCCTGGTCTCCGTTTTATGTGCTTTTTTCATTTGTTTTTGCCTTTTATCTCTCAGATTGATGGAATAACCATAAGTTCCCTAGATGATGTTCCTGCTGGACCTGTCACTTCTTTTTTCAGATCTATTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTCGTTGGACTTCTAGTGAACCTCCATCTCTGTACATATTTATTAATTGCAGCACGCGTGAACTTGCAATGATAGAGAAGTATGTGAACTGCTATCATGCCATCTTTGATGGTGGATTCGATGTTTTTGCCTGTACTCCCGGTGACTCATTTTGGGATTTGCAGGAAACTTTTGCTTCGTCAATCCCCACCCTGATGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACTGGGATTCCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCGGTGTTTTACATTAGAATCAGAGAGTATTCTAAGACAGTACCAATAGCACCTTATATTGTTAATTACAGTGGAGCATTGTTTCGTCAATACCCTGGACCTTGGCAAGTGATGTTAAAACAAGCAGATAATTCTTATGCTTGCGTCGCAGAGAGTGAGACGAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTAAGGGTCCTTGGACTACAGGAAGAACAAGGAAGCTCATTAGAATTTCTTCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATAATGACTCTGAAGTATCTTCGGCATGGCGTAGTTGAGCACAGCTCGAGCGTCGATTATTTCCTCTTCAAACACTTGCATTTTCGGTGAGACGATATCGATGATCTCAAACATGAGAGGCCAAGATGACCCTATTTCTAAAAGACTCTCGTGGCTTTCCCTTTGCACAATCATTTAAAAGG

Coding sequence (CDS)

ATGGCGATCATGGCGTTTCTCTCTTCTCCACCGCACATTCCCTCTCTGGTTCGACCGTGTCACAGAAATTTTCTATTCTCTCCTATTTCCTCTTCCTTCAGTGCTCTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTAGCGACTTCGGGATTTTGCTTTAGGATACACTGCAGTGACAAAGAACGAGCTGCACCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCTAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTGGAGGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCCTCGTACAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTATTTCCAGATAAACCAGACAAAGGCAGAGCTTCACAGTTGTTCAAAACAGCTCTCGACTCGAAATGCGGAGCTAATCGAGGGCATGCTTGTCCACACAATATAAATCCTGGTCTCCGTTTTATGTGCTTTTTTCATTTGTTTTTGCCTTTTATCTCTCAGATTGATGGAATAACCATAAGTTCCCTAGATGATGTTCCTGCTGGACCTGTCACTTCTTTTTTCAGATCTATTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTCGTTGGACTTCTAGTGAACCTCCATCTCTGTACATATTTATTAATTGCAGCACGCGTGAACTTGCAATGATAGAGAAGTATGTGAACTGCTATCATGCCATCTTTGATGGTGGATTCGATGTTTTTGCCTGTACTCCCGGTGACTCATTTTGGGATTTGCAGGAAACTTTTGCTTCGTCAATCCCCACCCTGATGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACTGGGATTCCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCGGTGTTTTACATTAGAATCAGAGAGTATTCTAAGACAGTACCAATAGCACCTTATATTGTTAATTACAGTGGAGCATTGTTTCGTCAATACCCTGGACCTTGGCAAGTGATGTTAAAACAAGCAGATAATTCTTATGCTTGCGTCGCAGAGAGTGAGACGAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTAAGGGTCCTTGGACTACAGGAAGAACAAGGAAGCTCATTAGAATTTCTTCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATAATGACTCTGAAGTATCTTCGGCATGGCGTAGTTGA

Protein sequence

MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCGANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWDLQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

Homology

[Close]

BLAST of Carg18734 vs. NCBI nr
Match: KAG7014184.1 (Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 921.0 bits (2379), Expect = 4.0e-264
Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
           ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF
Sbjct: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD
Sbjct: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
           LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI
Sbjct: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 450

[Close]

BLAST of Carg18734 vs. NCBI nr
Match: KAG6575630.1 (Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 752.3 bits (1941), Expect = 2.4e-213
Identity = 390/450 (86.67%), Postives = 390/450 (86.67%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRPCH NFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPCHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS   
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGITISSLDDVPAGPVTSFFRSIRNTLDF
Sbjct: 181 ------------------------------IDGITISSLDDVPAGPVTSFFRSIRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV                        
Sbjct: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI
Sbjct: 301 --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 391

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Carg18734 vs. NCBI nr
Match: XP_022954402.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 746.9 bits (1927), Expect = 1.0e-211
Identity = 388/450 (86.22%), Postives = 389/450 (86.44%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRP H NFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS   
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGITISSLDDVPAGPVTSFFRSIRNTLDF
Sbjct: 181 ------------------------------IDGITISSLDDVPAGPVTSFFRSIRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV                        
Sbjct: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI
Sbjct: 301 --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 391

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Carg18734 vs. NCBI nr
Match: XP_022992481.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 746.1 bits (1925), Expect = 1.7e-211
Identity = 387/450 (86.00%), Postives = 388/450 (86.22%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRP H NFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS   
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGITISSLDD+PAGPVTSFFRSIRNTLDF
Sbjct: 181 ------------------------------IDGITISSLDDIPAGPVTSFFRSIRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV                        
Sbjct: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI
Sbjct: 301 --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 391

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Carg18734 vs. NCBI nr
Match: XP_023547388.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 744.2 bits (1920), Expect = 6.6e-211
Identity = 386/450 (85.78%), Postives = 389/450 (86.44%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRP H NFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQL+LAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS   
Sbjct: 121 ISSYKGSSDEFIDANIQLSLAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGITISSLDDVPAGPVTSFFRSIRNTLDF
Sbjct: 181 ------------------------------IDGITISSLDDVPAGPVTSFFRSIRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV                        
Sbjct: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI
Sbjct: 301 --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETK+ELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKEELLRVLGLQEEQG 391

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKA+TWWEEDNDSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKASTWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Carg18734 vs. ExPASy Swiss-Prot
Match: Q8H0W0 (Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 2.2e-140
Identity = 258/412 (62.62%), Postives = 299/412 (72.57%), Query Frame = 0


Query: 43  SLFGAQTLATSGFCFRIHCSDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANS 102
           +LF + ++ TS    RI C     +    +  + +SDP+ GVP+YKPK+YEVL +DAANS
Sbjct: 10  ALFSSPSILTS----RIRCGATANSGGAISSTSSNSDPRRGVPLYKPKSYEVLATDAANS 69

Query: 103 LAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVF 162
           LA+AL+D K RLEIDFPPLPS+ISSYKGSSD+FIDANIQLA+ V R LQEK  TR+CIVF
Sbjct: 70  LAFALQDSKSRLEIDFPPLPSSISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVF 129

Query: 163 PDKPDKGRASQLFKTALDSKCGANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISS 222
           PDKP+K RASQ FK A DS                                 +DGI+I S
Sbjct: 130 PDKPEKRRASQRFKAAFDS---------------------------------VDGISIGS 189

Query: 223 LDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNC 282
           LDD+P   VT+FFRSIR+TLDFDFEDEN G W   EPP+LYIFINCSTREL+ IEK+V  
Sbjct: 190 LDDIPGTSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFV-- 249

Query: 283 YHAIFDGGFDVFACTPGDSFWDLQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYR 342
                                   ETFASS P L+FNLEL+TLRADLGLLGFPPKDLHYR
Sbjct: 250 ------------------------ETFASSTPALLFNLELDTLRADLGLLGFPPKDLHYR 309

Query: 343 FLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESET 402
           FLSQFIPVFYIR REYSKTV +AP+++NY+GALFRQYPGPWQVMLKQ D S+ACVAES T
Sbjct: 310 FLSQFIPVFYIRTREYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESPT 358

Query: 403 RFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           RFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEED + E SS WR+
Sbjct: 370 RFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of Carg18734 vs. ExPASy TrEMBL
Match: A0A6J1GQW6 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456648 PE=4 SV=1)

HSP 1 Score: 746.9 bits (1927), Expect = 4.9e-212
Identity = 388/450 (86.22%), Postives = 389/450 (86.44%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRP H NFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS   
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGITISSLDDVPAGPVTSFFRSIRNTLDF
Sbjct: 181 ------------------------------IDGITISSLDDVPAGPVTSFFRSIRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV                        
Sbjct: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI
Sbjct: 301 --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 391

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Carg18734 vs. ExPASy TrEMBL
Match: A0A6J1JTN7 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488800 PE=4 SV=1)

HSP 1 Score: 746.1 bits (1925), Expect = 8.4e-212
Identity = 387/450 (86.00%), Postives = 388/450 (86.22%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRP H NFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS   
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGITISSLDD+PAGPVTSFFRSIRNTLDF
Sbjct: 181 ------------------------------IDGITISSLDDIPAGPVTSFFRSIRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV                        
Sbjct: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI
Sbjct: 301 --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 391

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Carg18734 vs. ExPASy TrEMBL
Match: A0A5A7UU42 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001640 PE=4 SV=1)

HSP 1 Score: 701.4 bits (1809), Expect = 2.4e-198
Identity = 364/450 (80.89%), Postives = 377/450 (83.78%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           M IMAFLSSPP+IPSL RP H NFLFSPISSS   LRRST SSLFGAQTLA SGFCFRIH
Sbjct: 1   MPIMAFLSSPPYIPSLSRPFHSNFLFSPISSS---LRRSTPSSLFGAQTLAASGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           C DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTA+DS   
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGIT+SSLDDVPAGPVTSFFRS+RNTLDF
Sbjct: 181 ------------------------------IDGITVSSLDDVPAGPVTSFFRSVRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFED+NAGRWTSS+PPSLYIFINCSTREL +IEKYV                        
Sbjct: 241 DFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV +
Sbjct: 301 --ETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAV 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 388

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Carg18734 vs. ExPASy TrEMBL
Match: A0A1S3CFB8 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499841 PE=4 SV=1)

HSP 1 Score: 697.6 bits (1799), Expect = 3.4e-197
Identity = 362/450 (80.44%), Postives = 376/450 (83.56%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           M IMAF+SSPP+IPSL RP   NFLFSPISSS   LRRST SSLFGAQTLA SGFCFRIH
Sbjct: 1   MPIMAFISSPPYIPSLSRPFQSNFLFSPISSS---LRRSTPSSLFGAQTLAASGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           C DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTA+DS   
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGIT+SSLDDVPAGPVTSFFRS+RNTLDF
Sbjct: 181 ------------------------------IDGITVSSLDDVPAGPVTSFFRSVRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFED+NAGRWTSS+PPSLYIFINCSTREL +IEKYV                        
Sbjct: 241 DFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV +
Sbjct: 301 --ETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAV 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 388

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Carg18734 vs. ExPASy TrEMBL
Match: A0A0A0KA03 (DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G431980 PE=4 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 5.0e-196
Identity = 362/450 (80.44%), Postives = 373/450 (82.89%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSL  P H NFLFSPISSS   LRRSTRSSLFGAQTLA SGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLSPPFHTNFLFSPISSS---LRRSTRSSLFGAQTLAASGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           C DKERAAPVT+ SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CLDKERAAPVTQRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180
           ISSYKGSSD+FIDANIQLALAVARNLQEKRG RSCIVFPDKP+K RASQLFKTALDS   
Sbjct: 121 ISSYKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDS--- 180

Query: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240
                                         IDGIT+SSLDDVPAG VTSFFRS+RNTLDF
Sbjct: 181 ------------------------------IDGITVSSLDDVPAGAVTSFFRSVRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300
           DFED+NAGRWTSS+PPSLYIFINCSTREL +IEKYV                        
Sbjct: 241 DFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKYV------------------------ 300

Query: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIP L+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV +
Sbjct: 301 --ETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAV 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420
           APYIVNYSGALFRQY GPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYAGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 388

Query: 421 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           SSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 421 SSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Carg18734 vs. TAIR 10
Match: AT1G73060.1 (Low PSII Accumulation 3 )

HSP 1 Score: 500.4 bits (1287), Expect = 1.6e-141
Identity = 258/412 (62.62%), Postives = 299/412 (72.57%), Query Frame = 0


Query: 43  SLFGAQTLATSGFCFRIHCSDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANS 102
           +LF + ++ TS    RI C     +    +  + +SDP+ GVP+YKPK+YEVL +DAANS
Sbjct: 10  ALFSSPSILTS----RIRCGATANSGGAISSTSSNSDPRRGVPLYKPKSYEVLATDAANS 69

Query: 103 LAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVF 162
           LA+AL+D K RLEIDFPPLPS+ISSYKGSSD+FIDANIQLA+ V R LQEK  TR+CIVF
Sbjct: 70  LAFALQDSKSRLEIDFPPLPSSISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVF 129

Query: 163 PDKPDKGRASQLFKTALDSKCGANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISS 222
           PDKP+K RASQ FK A DS                                 +DGI+I S
Sbjct: 130 PDKPEKRRASQRFKAAFDS---------------------------------VDGISIGS 189

Query: 223 LDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNC 282
           LDD+P   VT+FFRSIR+TLDFDFEDEN G W   EPP+LYIFINCSTREL+ IEK+V  
Sbjct: 190 LDDIPGTSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFV-- 249

Query: 283 YHAIFDGGFDVFACTPGDSFWDLQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYR 342
                                   ETFASS P L+FNLEL+TLRADLGLLGFPPKDLHYR
Sbjct: 250 ------------------------ETFASSTPALLFNLELDTLRADLGLLGFPPKDLHYR 309

Query: 343 FLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESET 402
           FLSQFIPVFYIR REYSKTV +AP+++NY+GALFRQYPGPWQVMLKQ D S+ACVAES T
Sbjct: 310 FLSQFIPVFYIRTREYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESPT 358

Query: 403 RFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 451
           RFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEED + E SS WR+
Sbjct: 370 RFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of Carg18734 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 47.0 bits (110), Expect = 4.7e-05
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 312 LMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKT----VPIAPYIVNY 371
           ++FN EL+ +R+     G+ PK             FY ++   +KT    +    YI N+
Sbjct: 225 IIFNGELDRIRS-----GYYPK------------FFYPKLAALTKTLLPKMETVYYIHNF 284

Query: 372 ----SGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELL 411
                G LFR YPGPWQV L++  N Y CV + E+  +L E   ++L
Sbjct: 285 KGQKGGVLFRCYPGPWQV-LRRTRNKYICVHQQESMPSLKEVALDIL 313

The following BLAST results are available for this feature:

BLAST of Carg18734 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014184.1	4.0e-264	100.00	Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
KAG6575630.1	2.4e-213	86.67	Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_022954402.1	1.0e-211	86.22	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]	[more]
XP_022992481.1	1.7e-211	86.00	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]	[more]
XP_023547388.1	6.6e-211	85.78	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18734 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H0W0	2.2e-140	62.62	Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1	[more]

BLAST of Carg18734 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQW6	4.9e-212	86.22	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JTN7	8.4e-212	86.00	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5A7UU42	2.4e-198	80.89	Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CFB8	3.4e-197	80.44	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KA03	5.0e-196	80.44	DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G431980 PE=...	[more]

BLAST of Carg18734 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73060.1	1.6e-141	62.62	Low PSII Accumulation 3	[more]
AT5G48790.1	4.7e-05	32.71	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 85..406 e-value: 1.2E-45 score: 156.0
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 52..450
None	No IPR available	PANTHER	PTHR34051:SF2	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 52..450

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18734-RA	Carg18734-RA	mRNA