Carg18731 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18731
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	GAG1At protein
Location	Carg_Chr17: 7205961 .. 7207523 (+)
RNA-Seq Expression	Carg18731
Synteny	Carg18731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGTCAATTTAGTCCAAAGACGGGACATCAAAAACACCGTAACCAAACGCCCCCAAAGGGTTCACCGAGCATTGAGTAAAACTGGAAGAACACACCATTTTGAGAGACAATCGGCGGACAAAATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGAATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGTTTTTGTTCTTTCCTTTACCGAATTTTGTTTCTGTCACTATTATCGCTGATGATCGTTTGTTGCTGCTGAGAGGAATTGATGCGGAAAAGCAGATTTGAACTCGTCGAGTCGTTTTTTTTTTTTTTTTTTGCCCGGGATTTGAAGAAGGGATACGTTTAAATATTGACGTGTGCTGTGCACTAAGAAGATTTCGATTCTTGAATGGAGTTCTGTTTTAAAATTACTTCTTAGTTTTGCTTGAAAACCGAACAGGGAACTCAACAATCTTTGGATTGCAATGGTGGGGATCGGGGTGTTCACTTTTTCGTTGTGTAATTTAGGGTTTCAGAATCTGGGGAGCTTCGATACGATATGTTTAATCTTTTTGGCCTTTGGCACTGGGTGAATTAGGGTTTAGAAATTTTACGTTTTGCTGTTGGGGTTATTCTGCAATTTGGAATGAGGAATGGTAGCTTATCGGGGCAATATTGTTGAGGATTTGATGATACTGATTTTTTAACTTCAGAATTGTTCCAATAGAAATCAAAAGTGATGCCTTGGGGCTGTATGGGAAGTGCTCTAGAGTAACATATTGATGAAAATGTTACTTTTAGATTGTTTTCATGGTCGATTTGGTTGTAGCTAAACTGAAGTTCTTCCTTATAAGATCATAGGCGAGTAAGTAGTGTCGATTAAACTGCTGGTGTATATACTTGATCTAAGAGGCAGAGATTCAAATCTTCCACCCCACAAGTTGTTGAACTTACAAAAAAAACTTACGAGACTTTTGCCCCCACTCTAATTTTCCCATAAGTCAAATAGGATCGAAAGTTGGACTATTTCCTTACCTAAAGGCAAGCAAGCCTCATCTGCTTTACTTTGTGAAATCAGGTCAGGGAATAGAATCAAAGGTTTAGGAGCAAACAAACCTATGCTAATTGCTAACATGACGATGGCTCTCGGGAAAGGGTAGAGTATGCCTACATTCAATCTTTACACACATGATGGTAAAGCTAGGTTATCGATGATTCTACAATAGGCGGCTACTACGTAAATAGATAAAAGCCCCCAAACACACTGCTACGTAAATCTATTTGAGGCTTTATTTAAAATCGACATGACTCATCATCACCACTTAATTGTTTGCAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTTTTTTTTTTCTTTAATTTTTTATTGCTCGTTTTGAGTTTGTTATGATAGAGA

mRNA sequence

AAGAGTCAATTTAGTCCAAAGACGGGACATCAAAAACACCGTAACCAAACGCCCCCAAAGGGTTCACCGAGCATTGAGTAAAACTGGAAGAACACACCATTTTGAGAGACAATCGGCGGACAAAATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGAATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTTTTTTTTTTCTTTAATTTTTTATTGCTCGTTTTGAGTTTGTTATGATAGAGA

Coding sequence (CDS)

ATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGAATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Protein sequence

MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQDYMERADKARSQRLSSGSSSAK

Homology

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_022953259.1 (uncharacterized protein LOC111455862 [Cucurbita moschata] >XP_023547796.1 uncharacterized protein LOC111806650 [Cucurbita pepo subsp. pepo] >KAG6575633.1 hypothetical protein SDJN03_26272, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014187.1 hypothetical protein SDJN02_24361 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_022992483.1 (uncharacterized protein LOC111488802 [Cucurbita maxima])

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSG+AKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGDAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_004135879.1 (uncharacterized protein LOC101214375 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRMEHYLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKH+SH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_008461185.1 (PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo] >KAA0058705.1 hypothetical protein E6C27_scaffold339G001750 [Cucumis melo var. makuwa] >TYK10511.1 hypothetical protein E5676_scaffold459G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRME+YLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_038897164.1 (uncharacterized protein LOC120085312 isoform X2 [Benincasa hispida])

HSP 1 Score: 143.7 bits (361), Expect = 7.3e-31
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAK GG+ GG GGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGEAKRGGATGGAGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWVLMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSS 78
          QDYME+ADKARSQRLSS
Sbjct: 61 QDYMEKADKARSQRLSS 77

[Close]

BLAST of Carg18731 vs. ExPASy TrEMBL
Match: A0A6J1GP50 (uncharacterized protein LOC111455862 OS=Cucurbita moschata OX=3662 GN=LOC111455862 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.3e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. ExPASy TrEMBL
Match: A0A6J1JZC0 (uncharacterized protein LOC111488802 OS=Cucurbita maxima OX=3661 GN=LOC111488802 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSG+AKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGDAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. ExPASy TrEMBL
Match: A0A5D3CFG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001610 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRME+YLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. ExPASy TrEMBL
Match: A0A1S3CEK3 (uncharacterized protein LOC103499845 OS=Cucumis melo OX=3656 GN=LOC103499845 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRME+YLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. ExPASy TrEMBL
Match: A0A2P5DWZ4 (GAG1At protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_025560 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.6e-29
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGG----GFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSK 60
          MSGEAKSGGS  GGG    GFR RMEHYLYSG+KKHV AGI +I ++FGIPW LMNRG+K
Sbjct: 4  MSGEAKSGGSSNGGGGGGQGFRGRMEHYLYSGDKKHVLAGIAIISLVFGIPWVLMNRGAK 63

Query: 61 HQSHQDYMERADKARSQRLSSGSSSAK 84
          HQSHQDY+E+ADKARSQRLSSGSSS K
Sbjct: 64 HQSHQDYLEKADKARSQRLSSGSSSTK 90

[Close]

BLAST of Carg18731 vs. TAIR 10
Match: AT1G16000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MSGEAKSGG---SIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKH 60
          M  E K+ G   S+ GGGGFR++MEHY+YSGEKKHV  GI ++ IIFG+PW LM +GSKH
Sbjct: 1  MGNETKTNGGPASMAGGGGFRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGSKH 60

Query: 61 QSHQDYMERADKARSQRLSSGSSSAK 84
          QSHQDYM++ADKAR  RLSS SS+ K
Sbjct: 61 QSHQDYMDKADKARKARLSSSSSANK 86

[Close]

BLAST of Carg18731 vs. TAIR 10
Match: AT1G80890.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16000.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 111.7 bits (278), Expect = 2.9e-25
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          M  E+KS     GGGG R++MEHY+YSGEKKHV AGI +I IIFGIPW LMN+GSKH+SH
Sbjct: 1  MGNESKSN---LGGGGIRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDY+E+ADKAR  RLSS SSS K
Sbjct: 61 QDYLEKADKARKARLSSSSSSDK 80

The following BLAST results are available for this feature:

BLAST of Carg18731 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953259.1	1.5e-36	100.00	uncharacterized protein LOC111455862 [Cucurbita moschata] >XP_023547796.1 unchar...	[more]
XP_022992483.1	3.4e-36	98.80	uncharacterized protein LOC111488802 [Cucurbita maxima]	[more]
XP_004135879.1	2.1e-33	91.57	uncharacterized protein LOC101214375 [Cucumis sativus]	[more]
XP_008461185.1	3.5e-33	91.57	PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo] >KAA0058705.1 hyp...	[more]
XP_038897164.1	7.3e-31	92.21	uncharacterized protein LOC120085312 isoform X2 [Benincasa hispida]	[more]

BLAST of Carg18731 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GP50	7.3e-37	100.00	uncharacterized protein LOC111455862 OS=Cucurbita moschata OX=3662 GN=LOC1114558...	[more]
A0A6J1JZC0	1.6e-36	98.80	uncharacterized protein LOC111488802 OS=Cucurbita maxima OX=3661 GN=LOC111488802...	[more]
A0A5D3CFG0	1.7e-33	91.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEK3	1.7e-33	91.57	uncharacterized protein LOC103499845 OS=Cucumis melo OX=3656 GN=LOC103499845 PE=...	[more]
A0A2P5DWZ4	9.6e-29	78.16	GAG1At protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_025560 PE=4 SV=1	[more]

BLAST of Carg18731 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16000.1	1.3e-25	65.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G80890.1	2.9e-25	69.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..72
None	No IPR available	PANTHER	PTHR35990	GAG1AT PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18731-RA	Carg18731-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane