Carg18693 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18693
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L6
Location	Carg_Chr17: 7420191 .. 7422014 (+)
RNA-Seq Expression	Carg18693
Synteny	Carg18693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCACTTGTCTTCTTTCTGGTTGCGAAGAAGAGGACCGCAGAGATACTGAAATGGCGCCCAAAACCCCTAGAGTTACACGTAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCCAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAATGGTGGAGTTTTCCCTCGTCACGATGCGAAGCTGAAAGCCGATGCCCCGGCTGAGAATTCGCCGAAGTTTTACCCTGCCGATGATGTGAAGAAGCCCCTTGTCAACAAGCGCAAGGCCAGGCTCACGAAACTGAGGTATGTATTGATTATTTTTCGGTTGAGAATTATATCACAGTGCAGTGTGGTGGGATTTGGTTCTTTGATCCTAAATATACTGTTTAGGGAACGCCTTTTTAATCCTGGATTTATTCCTATTTTAGAGCCAGCATTACTCCTGGTACTGTGTTGATAATCCTTGCTGGGAGGTTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTTCCATCTGGGTTGCTTCTGGTCACTGGTGAGTTTCCTAATTTTTTCCCCGACTTGGCTAGATCATACCAAAATCCATTAGTGGTGGAATTTTGATGGTTCTTTGCCTTTACATTGCGTTTATTTGATTTTAATTGGGAGATTATGTTGTAATTTGGTGCCATCTTTGGGTTTCATTTCTTTCATTCACTATGTAATTTTAGCGGACTTTCAGCCATGGTATGTGGTTATCTATCCAACCAAAAACGTTTGACGAAGTATTACTTATTTCTTAGCTGCCAATTTGAATAATTTCGACGAAGTATTAAGTCTACGAGTGTATCTGCTTAGGAATTTCTTGCTGTTCTTTTTCTGATGATTTGGAAGTTGAATCTTTTAATGCTGAAGATTGGATTTAACGTTCCATTTTAACAGTTTATGTATAGAACACCAACTCAATTCATTTTTTGGGTTCTTATGAAAAATGGGTGTGCTTGTTCATCAGTTCTTCAACATATTCTTTATGACTATAGGCCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCGTACGCCATTGCAACCTCCACCAAAGTAGACATCTCTGGAGTTAACGCAGAAAAGTTTGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGGGTGAAGGCGAATTTTTCGAGGCCGAGAAAGAGGTAGGCTGACCCGAATGATACAACCTCGTGCCCTTATAATTCTAATTGTTTTAGCCAGCCGGCCTAAGTTTTTTGGTTCCAACTTATTGTAGGAGAAAAGTGCTCTCCCAGCTGACAGGAAGGATGACCAGAAAGCTGTGGATACACCATTGATCAAGTCGATCGAGGGGGTACCGGAGTTGAAGGCTTACTTGGCTGCAAGATTTTCCCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAGATAATGGGTCTGGTTTTTATTTTTTAGATCATCACCTTGTTTTTTGTTCGTCTGAACATGGCTATGACTTGTGATAGTTGCCTTGTCCCAAATTTTGATTCTAAATAGAGATTCCATGTTTCGTTAGCTCTGTTTTCTTATTGAATACTGTGTTCATGTTCTTCGTTGGGTCTGTAACCCTCCGTTACAGAATTTCAGGCTTCAGCCAATCTCATTGATTTAAAGCCACCCGAACTCTGGTGCAAAGCCATTCACGATGTGTTTACACTATGAGAAAATATTAAACATGTTTGAAACTTGATAGACCAAAAAGTATAAAATTCGAAACTTGATGTTCTTGAACTGATGGTTTGTCTTTCAACTCAATTTGTTTTT

mRNA sequence

TGGCACTTGTCTTCTTTCTGGTTGCGAAGAAGAGGACCGCAGAGATACTGAAATGGCGCCCAAAACCCCTAGAGTTACACGTAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCCAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAATGGTGGAGTTTTCCCTCGTCACGATGCGAAGCTGAAAGCCGATGCCCCGGCTGAGAATTCGCCGAAGTTTTACCCTGCCGATGATGTGAAGAAGCCCCTTGTCAACAAGCGCAAGGCCAGGCTCACGAAACTGAGAGCCAGCATTACTCCTGGTACTGTGTTGATAATCCTTGCTGGGAGGTTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTTCCATCTGGGTTGCTTCTGGTCACTGGCCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCGTACGCCATTGCAACCTCCACCAAAGTAGACATCTCTGGAGTTAACGCAGAAAAGTTTGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGGGTGAAGGCGAATTTTTCGAGGCCGAGAAAGAGGAGAAAAGTGCTCTCCCAGCTGACAGGAAGGATGACCAGAAAGCTGTGGATACACCATTGATCAAGTCGATCGAGGGGGTACCGGAGTTGAAGGCTTACTTGGCTGCAAGATTTTCCCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAGATAATGGGTCTGGTTTTTATTTTTTAGATCATCACCTTGTTTTTTGTTCGTCTGAACATGGCTATGACTTGTGATAGTTGCCTTGTCCCAAATTTTGATTCTAAATAGAGATTCCATGTTTCGTTAGCTCTGTTTTCTTATTGAATACTGTGTTCATGTTCTTCGTTGGGTCTGTAACCCTCCGTTACAGAATTTCAGGCTTCAGCCAATCTCATTGATTTAAAGCCACCCGAACTCTGGTGCAAAGCCATTCACGATGTGTTTACACTATGAGAAAATATTAAACATGTTTGAAACTTGATAGACCAAAAAGTATAAAATTCGAAACTTGATGTTCTTGAACTGATGGTTTGTCTTTCAACTCAATTTGTTTTT

Coding sequence (CDS)

ATGGCGCCCAAAACCCCTAGAGTTACACGTAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCCAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAATGGTGGAGTTTTCCCTCGTCACGATGCGAAGCTGAAAGCCGATGCCCCGGCTGAGAATTCGCCGAAGTTTTACCCTGCCGATGATGTGAAGAAGCCCCTTGTCAACAAGCGCAAGGCCAGGCTCACGAAACTGAGAGCCAGCATTACTCCTGGTACTGTGTTGATAATCCTTGCTGGGAGGTTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTTCCATCTGGGTTGCTTCTGGTCACTGGCCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCGTACGCCATTGCAACCTCCACCAAAGTAGACATCTCTGGAGTTAACGCAGAAAAGTTTGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGGGTGAAGGCGAATTTTTCGAGGCCGAGAAAGAGGAGAAAAGTGCTCTCCCAGCTGACAGGAAGGATGACCAGAAAGCTGTGGATACACCATTGATCAAGTCGATCGAGGGGGTACCGGAGTTGAAGGCTTACTTGGCTGCAAGATTTTCCCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAG

Protein sequence

MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSPKFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF

Homology

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BLAST of Carg18693 vs. NCBI nr
Match: KAG6575673.1 (60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014224.1 60S ribosomal protein L6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 449.1 bits (1154), Expect = 2.3e-122
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

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BLAST of Carg18693 vs. NCBI nr
Match: XP_022954334.1 (60S ribosomal protein L6-3-like [Cucurbita moschata])

HSP 1 Score: 445.7 bits (1145), Expect = 2.5e-121
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAE SP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPADRKDDQKAVDTPLIKSI+GVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIDGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Carg18693 vs. NCBI nr
Match: XP_023548320.1 (uncharacterized protein LOC111806995 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 445.3 bits (1144), Expect = 3.3e-121
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD KLKADAPAE SP
Sbjct: 521 MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 580

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 581 KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 640

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 641 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 700

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 701 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 751

[Close]

BLAST of Carg18693 vs. NCBI nr
Match: XP_023548319.1 (uncharacterized protein LOC111806995 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 445.3 bits (1144), Expect = 3.3e-121
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD KLKADAPAE SP
Sbjct: 651 MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 710

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 711 KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 770

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 771 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 830

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 831 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 881

[Close]

BLAST of Carg18693 vs. NCBI nr
Match: XP_022991926.1 (60S ribosomal protein L6-1-like [Cucurbita maxima])

HSP 1 Score: 444.1 bits (1141), Expect = 7.3e-121
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAK KADAPAE SP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Carg18693 vs. ExPASy Swiss-Prot
Match: Q9C9C5 (60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.0e-101
Identity = 188/228 (82.46%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSPKFY 63
           +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP E  PKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           INGVPLRRVNQ+Y I TSTKVDISGV  +KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  +KDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Carg18693 vs. ExPASy Swiss-Prot
Match: Q9FZ76 (60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.6e-101
Identity = 186/230 (80.87%), Postives = 201/230 (87.39%), Query Frame = 0


Query: 2   APKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSPK 61
           A +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DAP E   K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEE 181
           FKINGVPLRRVNQ+Y I TSTK+DISGVN EKFDDKYF K  +KKKKK EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           K  +P ++K+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHELVF
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of Carg18693 vs. ExPASy Swiss-Prot
Match: P34091 (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.3e-100
Identity = 183/228 (80.26%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSPKFY 63
           + P V+RNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  K       E  PKFY
Sbjct: 7   RKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFY 66

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PADDVKKPL+NKRK + TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 67  PADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFK 126

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           +NGVPLRRVNQ+Y IATSTKVDISGVN EKFDDKYF K+ +KK KKGEGEFFEAEK+E +
Sbjct: 127 VNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVN 186

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            LP ++KDDQKAVD  L+K+IEGVPELKAYL ARFSLKAGMKPHELVF
Sbjct: 187 VLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

[Close]

BLAST of Carg18693 vs. ExPASy Swiss-Prot
Match: Q9C9C6 (60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 5.6e-100
Identity = 186/228 (81.58%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP E  PKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           INGVPLRRVNQ+Y I TSTKVDISGV  +KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  +KDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Carg18693 vs. ExPASy Swiss-Prot
Match: Q2YGT9 (60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3)

HSP 1 Score: 191.8 bits (486), Expect = 8.5e-48
Identity = 115/250 (46.00%), Postives = 154/250 (61.60%), Query Frame = 0


Query: 6   PRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPA--------- 65
           P  +RNP L+RG+G+YSRS MY ++ L+  K K      + + K K    A         
Sbjct: 38  PHCSRNPVLVRGIGRYSRSAMYSRKALY--KRKYSAAKSKVEKKKKVRVLATVTKPVGGD 97

Query: 66  ----------ENSPKFYPADDVKKPLVNKRK----ARLTKLRASITPGTVLIILAGRFKG 125
                        P++YP +DV + L++  K      + KLRASITPGT+LIIL GR +G
Sbjct: 98  KNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRG 157

Query: 126 KRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYAIATSTKVDISGVN-AEKFDDKYFSK 185
           KRV+FLKQL SGLLLVTGP  +N VPLRR +Q + IATSTK+DISGV   E   D YF K
Sbjct: 158 KRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKK 217

Query: 186 EVQKKKKKGEGEFFEAEKEEKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLK 232
           +  +K +  EGE F+ EK EK  +   RK DQKAVD+ +++ I+ VP+L+ YL + F+L 
Sbjct: 218 KKLRKPRHQEGEIFDTEK-EKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALT 277

[Close]

BLAST of Carg18693 vs. ExPASy TrEMBL
Match: A0A6J1GSP4 (60S ribosomal protein L6-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456610 PE=3 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.2e-121
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAE SP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPADRKDDQKAVDTPLIKSI+GVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIDGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Carg18693 vs. ExPASy TrEMBL
Match: A0A6J1JS55 (60S ribosomal protein L6-1-like OS=Cucurbita maxima OX=3661 GN=LOC111488421 PE=3 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 3.5e-121
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAK KADAPAE SP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Carg18693 vs. ExPASy TrEMBL
Match: A0A0A0K9V0 (60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_7G428940 PE=3 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 218/231 (94.37%), Postives = 223/231 (96.54%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+ KA APAE  P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKAAAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKA+LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKVDISGVN+EKFDDKYFSKE QKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEAQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPA++KDDQKAVDTPLIKSIE VPELKAYL ARFSLKAGMKPHELVF
Sbjct: 181 EKSALPAEKKDDQKAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Carg18693 vs. ExPASy TrEMBL
Match: A0A6J1H5C5 (60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111460710 PE=3 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 218/231 (94.37%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+ KADA  E  P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKV+ISGVN EKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPAD+KDDQKAVDTPLIKSIEGVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231

[Close]

BLAST of Carg18693 vs. ExPASy TrEMBL
Match: A0A6J1KWW3 (60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111497875 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 4.9e-115
Identity = 217/231 (93.94%), Postives = 221/231 (95.67%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+ KADA  E  P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKV+ SGVN EKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           EKSALPAD+KDDQKAVDTPLIKSIEGVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 231

[Close]

BLAST of Carg18693 vs. TAIR 10
Match: AT1G74050.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 369.4 bits (947), Expect = 2.1e-102
Identity = 188/228 (82.46%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSPKFY 63
           +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP E  PKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           INGVPLRRVNQ+Y I TSTKVDISGV  +KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  +KDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Carg18693 vs. TAIR 10
Match: AT1G18540.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 368.2 bits (944), Expect = 4.7e-102
Identity = 186/230 (80.87%), Postives = 201/230 (87.39%), Query Frame = 0


Query: 2   APKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSPK 61
           A +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DAP E   K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEE 181
           FKINGVPLRRVNQ+Y I TSTK+DISGVN EKFDDKYF K  +KKKKK EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           K  +P ++K+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHELVF
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of Carg18693 vs. TAIR 10
Match: AT1G74060.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 365.2 bits (936), Expect = 4.0e-101
Identity = 186/228 (81.58%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK K DAP E  PKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           INGVPLRRVNQ+Y I TSTKVDISGV  +KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  +KDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

The following BLAST results are available for this feature:

BLAST of Carg18693 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575673.1	2.3e-122	100.00	60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_022954334.1	2.5e-121	99.13	60S ribosomal protein L6-3-like [Cucurbita moschata]	[more]
XP_023548320.1	3.3e-121	99.13	uncharacterized protein LOC111806995 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023548319.1	3.3e-121	99.13	uncharacterized protein LOC111806995 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022991926.1	7.3e-121	99.13	60S ribosomal protein L6-1-like [Cucurbita maxima]	[more]

BLAST of Carg18693 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9C5	3.0e-101	82.46	60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1	[more]
Q9FZ76	6.6e-101	80.87	60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1	[more]
P34091	3.3e-100	80.26	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 S...	[more]
Q9C9C6	5.6e-100	81.58	60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1	[more]
Q2YGT9	8.5e-48	46.00	60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3	[more]

BLAST of Carg18693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSP4	1.2e-121	99.13	60S ribosomal protein L6-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456610 PE...	[more]
A0A6J1JS55	3.5e-121	99.13	60S ribosomal protein L6-1-like OS=Cucurbita maxima OX=3661 GN=LOC111488421 PE=3...	[more]
A0A0A0K9V0	1.3e-115	94.37	60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_7G428940 PE=3 SV=1	[more]
A0A6J1H5C5	1.7e-115	94.37	60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111460710 PE=3 SV=1	[more]
A0A6J1KWW3	4.9e-115	93.94	60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111497875 PE=3 SV=1	[more]

BLAST of Carg18693 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74050.1	2.1e-102	82.46	Ribosomal protein L6 family protein	[more]
AT1G18540.1	4.7e-102	80.87	Ribosomal protein L6 family protein	[more]
AT1G74060.1	4.0e-101	81.58	Ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 124..231 e-value: 9.9E-39 score: 132.4
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 85..169 e-value: 8.6E-17 score: 62.9
IPR005568	Ribosomal protein L6, N-terminal	PFAM	PF03868	Ribosomal_L6e_N	coord: 5..54 e-value: 1.8E-14 score: 53.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..195
None	No IPR available	PANTHER	PTHR10715:SF9	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR041997	Ribosomal Protein L6, KOW domain	CDD	cd13156	KOW_RPL6	coord: 79..231 e-value: 4.34656E-80 score: 234.75
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 85..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18693-RA	Carg18693-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome