Carg18685 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18685
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein gamma response 1
Location	Carg_Chr17: 7452825 .. 7454111 (-)
RNA-Seq Expression	Carg18685
Synteny	Carg18685

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGGTATGTCTCTAATTCCTCTGCCCTCTGTTGATCAGCTGAAGTTTGCCGCATTTTCGAATTATTTTTCGTGCATTTTTATCTGCCTGATTACTGTTCAATCGAGCGAATGCAGAAAGAATACTTCCGCAATCTGTTACTATTCGACAATGAACTTTCAATCGTATTCCTAAATTTCAACCTGCGAGCCGTTCTATATGAATTTCTGCTTATCCACTTTTATGATTCCGAACTCTAGCATGGGATTCTCACCTTGTTCTTTCAAATCGTCCAGCAGTGGAATCGCTAACTTGTACTTCACCTTTTTCTGTTTGGATTGTACAATTTTTTTAGTGTTTATCTCCATTAGAATGTTGAACTTGCTGCGACTTGTATGCTTGCTAGTATGTAGTTTATGTTGCAAGCTCTGTGGTAAACGTGTTTTTGACAAATAGACCAATTTGATTTTCCGCTACGAATAGCTAAAAGCAGGATTTGATCTATAATTGCGAAACCTAGGTCAATCCCGCCATTAGTATAAGCAAAATCTCGGAGGCATAATGTATCGTTTGTAGAGATTCATCATTTTTTTGTGGAACTTTTACCTTTGTTGACATAGTTATATATGGTATTTGTAGAGATTCATCAATTTTTTGTGGAACTTTTACCTTTGTTGACATAGTTATGTATGGTATTTGTAGAGATTCATCAATTTTTTGTGGAACTTTTACCTTTGTTGACATTGTTATGTATTTCCTCTTGCAATGCGGTTTTAGTCCAAGTTTCTTTGTTCCTGTTATTGTTTTCTTCAATAGTTGAAACTTAACTGGATGTTCTTTCTCCTTCGTTCATCTGGTTTTAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGGTTTGTTCAAAAACCTCTCTGATAATGAGTAATCAAATTCATTGCGCACCCAATTGACTAGCCTTGAGGGATAGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

mRNA sequence

ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

Coding sequence (CDS)

ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

Protein sequence

MSSQSNRTARFFVGHYTYSPIDFSFRRLKSILHEIWRLTKITLSILEGPLLKDLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEMFDELQKKLNEKTDEKLQENLFEKLNYKLQKL

Homology

[Close]

BLAST of Carg18685 vs. NCBI nr
Match: KAG7014232.1 (hypothetical protein SDJN02_24407, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSSQSNRTARFFVGHYTYSPIDFSFRRLKSILHEIWRLTKITLSILEGPLLKDLLRSELL 60
           MSSQSNRTARFFVGHYTYSPIDFSFRRLKSILHEIWRLTKITLSILEGPLLKDLLRSELL
Sbjct: 1   MSSQSNRTARFFVGHYTYSPIDFSFRRLKSILHEIWRLTKITLSILEGPLLKDLLRSELL 60

Query: 61  DEQFKVEEVSQHLNLKWREIDEGIELQQKLLEMFDELQKKLNEKTDEKLQENLFEKLNYK 120
           DEQFKVEEVSQHLNLKWREIDEGIELQQKLLEMFDELQKKLNEKTDEKLQENLFEKLNYK
Sbjct: 61  DEQFKVEEVSQHLNLKWREIDEGIELQQKLLEMFDELQKKLNEKTDEKLQENLFEKLNYK 120

Query: 121 LQKL 125
           LQKL
Sbjct: 121 LQKL 124

[Close]

BLAST of Carg18685 vs. NCBI nr
Match: KAG6575679.1 (SURP and G-patch domain-containing protein 1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.6 bits (449), Expect = 6.8e-41
Identity = 94/110 (85.45%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MSSQSNRTARFFVGHYTYSPIDFSFRRLKSILHEIWRLTKITLSILEGPLLKDLLRSELL 60
           MSSQSNRTARFFVGHYTYSPIDFSF RLKSILHEIWRLTKITLSILEGPLLKDLLRSELL
Sbjct: 1   MSSQSNRTARFFVGHYTYSPIDFSFLRLKSILHEIWRLTKITLSILEGPLLKDLLRSELL 60

Query: 61  DEQFKVEEVSQHLNLKWREIDEGIELQQKLLEMFDELQKKLNEKTDEKLQ 111
           DEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM       +  K  +K++
Sbjct: 61  DEQFKVEEVSQHLNLKWREIDEGIELQQKLLEMVCSKTSLIMTKKQDKME 110

[Close]

BLAST of Carg18685 vs. NCBI nr
Match: XP_023004494.1 (protein gamma response 1 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-09
Identity = 53/112 (47.32%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM------------------- 112
           DLLR++LLDEQ KVEE+SQ L  K REIDEGIELQQKLLEM                   
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQKLLEMVRSKSSLIMSKEQKLKEHE 182

Query: 113 ----------------FDELQKKLNEKTDE-----KLQENLFEKLNYKLQKL 125
                           F ELQKKLNEKTDE     KL+ENLF+K+  +  ++
Sbjct: 183 DESNALRSKLTSLEIKFHELQKKLNEKTDEVSKVKKLEENLFKKIESQASEI 234

[Close]

BLAST of Carg18685 vs. NCBI nr
Match: KAG6593314.1 (Protein gamma response 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025663.1 Protein gamma response 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-09
Identity = 53/112 (47.32%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM------------------- 112
           DLLR++LLDEQ KVEE+SQ L  K REIDEGIELQQKLLEM                   
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQKLLEMVRSKTSLIMSKEQKLKEHE 182

Query: 113 ----------------FDELQKKLNEKTDE-----KLQENLFEKLNYKLQKL 125
                           F ELQKKLNEKTDE     KL+ENLF+K+  +  ++
Sbjct: 183 DESNALRSKLTSLEIKFHELQKKLNEKTDEVSKVKKLEENLFKKIESQASEI 234

[Close]

BLAST of Carg18685 vs. NCBI nr
Match: XP_023514213.1 (protein gamma response 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.9 bits (172), Expect = 9.0e-09
Identity = 52/112 (46.43%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM------------------- 112
           DLLR++LLDEQ KVEE+SQ L  K REIDEGIELQQKLLEM                   
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQKLLEMVRSKTSLIMSKEQKLKEHE 182

Query: 113 ----------------FDELQKKLNEKTDE-----KLQENLFEKLNYKLQKL 125
                           F ELQKKLNEKTDE     +L+ENLF+K+  +  ++
Sbjct: 183 DESNALRSKLTSLEIKFHELQKKLNEKTDEVSKVKRLEENLFKKIESQASEI 234

[Close]

BLAST of Carg18685 vs. ExPASy TrEMBL
Match: A0A6J1KWF2 (protein gamma response 1 OS=Cucurbita maxima OX=3661 GN=LOC111497782 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 53/112 (47.32%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM------------------- 112
           DLLR++LLDEQ KVEE+SQ L  K REIDEGIELQQKLLEM                   
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQKLLEMVRSKSSLIMSKEQKLKEHE 182

Query: 113 ----------------FDELQKKLNEKTDE-----KLQENLFEKLNYKLQKL 125
                           F ELQKKLNEKTDE     KL+ENLF+K+  +  ++
Sbjct: 183 DESNALRSKLTSLEIKFHELQKKLNEKTDEVSKVKKLEENLFKKIESQASEI 234

[Close]

BLAST of Carg18685 vs. ExPASy TrEMBL
Match: A0A5A7URX2 (Protein gamma response 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00990 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.7e-09
Identity = 53/112 (47.32%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM------------------- 112
           DLLRS+LL EQ K EE+SQ L  K REIDEGIELQQKLLEM                   
Sbjct: 128 DLLRSKLLGEQLKAEELSQQLKQKSREIDEGIELQQKLLEMVRSKTSLIMSKEQKQKEYE 187

Query: 113 ----------------FDELQKKLNEKTDE-----KLQENLFEKLNYKLQKL 125
                           FDELQKKLN KTDE     KL+ENLF+KL  +  ++
Sbjct: 188 DQSNVLRTKLTSMEVKFDELQKKLNAKTDEVSTAKKLEENLFKKLELQASEI 239

[Close]

BLAST of Carg18685 vs. ExPASy TrEMBL
Match: A0A1S3CDW1 (protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.7e-09
Identity = 53/112 (47.32%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM------------------- 112
           DLLRS+LL EQ K EE+SQ L  K REIDEGIELQQKLLEM                   
Sbjct: 123 DLLRSKLLGEQLKAEELSQQLKQKSREIDEGIELQQKLLEMVRSKTSLIMSKEQKQKEYE 182

Query: 113 ----------------FDELQKKLNEKTDE-----KLQENLFEKLNYKLQKL 125
                           FDELQKKLN KTDE     KL+ENLF+KL  +  ++
Sbjct: 183 DQSNVLRTKLTSMEVKFDELQKKLNAKTDEVSTAKKLEENLFKKLELQASEI 234

[Close]

BLAST of Carg18685 vs. ExPASy TrEMBL
Match: A0A6J1H6V6 (protein gamma response 1 OS=Cucurbita moschata OX=3662 GN=LOC111460660 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.7e-09
Identity = 52/112 (46.43%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM------------------- 112
           DLLR++LLDEQ KVEE+SQ L  K REIDE IELQQKLLEM                   
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEAIELQQKLLEMVRSKTSLIMSKEQKLKEHE 182

Query: 113 ----------------FDELQKKLNEKTDE-----KLQENLFEKLNYKLQKL 125
                           F ELQKKLNEKTDE     KL+ENLF+K+  +  ++
Sbjct: 183 DESNALRSKLTSLEIKFHELQKKLNEKTDEVSKVKKLEENLFKKIESQASEI 234

[Close]

BLAST of Carg18685 vs. ExPASy TrEMBL
Match: A0A0A0K9T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428840 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEM------------------- 112
           DLLRS+LL EQ K EE++Q L  K REIDEGIELQQKLLEM                   
Sbjct: 123 DLLRSKLLGEQLKAEELAQQLKQKSREIDEGIELQQKLLEMVRSKTSLIMSKEQKLKEYE 182

Query: 113 ----------------FDELQKKLNEKTDE-----KLQENLFEKLNYKLQKL 125
                           FDELQKKLN KTDE     KL+ENLF+KL  +  ++
Sbjct: 183 DQSNVLRTKLTSMEVKFDELQKKLNAKTDEVSTVKKLEENLFKKLELQASEI 234

The following BLAST results are available for this feature:

BLAST of Carg18685 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014232.1	1.6e-58	100.00	hypothetical protein SDJN02_24407, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575679.1	6.8e-41	85.45	SURP and G-patch domain-containing protein 1-like protein, partial [Cucurbita ar...	[more]
XP_023004494.1	4.0e-09	47.32	protein gamma response 1 [Cucurbita maxima]	[more]
KAG6593314.1	4.0e-09	47.32	Protein gamma response 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_023514213.1	9.0e-09	46.43	protein gamma response 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18685 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KWF2	2.0e-09	47.32	protein gamma response 1 OS=Cucurbita maxima OX=3661 GN=LOC111497782 PE=4 SV=1	[more]
A0A5A7URX2	5.7e-09	47.32	Protein gamma response 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CDW1	5.7e-09	47.32	protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1	[more]
A0A6J1H6V6	9.7e-09	46.43	protein gamma response 1 OS=Cucurbita moschata OX=3662 GN=LOC111460660 PE=4 SV=1	[more]
A0A0A0K9T9	1.3e-08	46.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428840 PE=4 SV=1	[more]

BLAST of Carg18685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18685-RA	Carg18685-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003677	DNA binding