Carg18658 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18658
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Structural maintenance of chromosomes protein 5
Location	Carg_Chr17: 7591702 .. 7596101 (+)
RNA-Seq Expression	Carg18658
Synteny	Carg18658

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGCCAAGCGTCGCGCAAAGCGCCCTAGAATTACGAGGTCCGTAACACCATCACTCAAATTTTGGCCCCCTGTTGAAATATATGTAGTTTTCTACCATCTTGGTATGTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTAGTGTGATAATGGTGTTAGAACTTGGGTCTTGCTTACGCAATTCTTTGACATATGTGTGGATGTTGAGAAAGTGTATGGAAAACGGGAATTTAAGGATTCCACGGTTTTATCTTTTTGAGCTTCGACCATATCAAGTTGCATTTATTCTCGTGGTCTTGGAAAATGAACTTAGGAAAAGTGGCTAATATTATTATACAATTTAGAGAAGTGGCTAAAATTAGCTACACCCTCTAACAGAAACTAATGTGTGGAGCTGTTGGCTGAAACAAATGTTAAACATCTTGTCTTAGTTGATTCTCTTATGTTTATTGTTATTGTCACCAAATGTTTTGTTTGTCTTAGTTGGTTCATTGACCTTCCTATTCGTTGATGGTTTAAATGACTGGAGGGATATAGGCATCACTTTCAGTTTTGGGAGGACCAGGGACTTGGAACTTGGCCTTCACATGAAATTCTTAACCTTTATGACCTCTCTGTTGTAAAGAAATCCCCTGTATTTGATGTCATTATAAGTTTTGTGGGATCTCATATTACAAAAATCTTTAAATGAAGATTATGTTAGATGAGACTTAAACAAGTAGAAGATTCTTTTGGATGGAATCTTAGAAATTCAGGGCATTTAGTGTCGCAATGAAGTCTCCATAACCAAATGGGCATCCTAAACCAACATACGAGTAGGTGGATTTGGGAAGGTAAGAACCTCAACAATTTCTTCCCTTTGAACCTTGGTTAACCTCAACAATTTCTTCCCTTTGAACCTTGGTTATGGAAGCATTCTAGAGGAAAGGGGTAATAAAAACAAGAGCTACTTTCATCTTTTACCCACGAGCTAAGGATTTGAAATAAAACTTCCTGATCCTTGAAATATTCCATCCAAAGTTAATTTTTAAAGAAGCACTAAATGAAGTATTTCTAAATTTGATTGATTTAATTATTCCCTCATTGCGAGCAAGAAGGGAAGCTTGCAATGCTTTCTCTCCTAGTTTGAAAACTAGAAACACCATTTCTCGTTCGACATGTGTTCAGGTGTGCCACTAGCTTCCATCTTGAGCCACTCAAACACATTAGTTTGAGTTACTTTCTCTACCCATTGTTATTTTGTCATGGATTTTCCAAATCATTCTTGGGGGGGTTAGGGGGGGGGGGGGGTTCGAGATTTCCTCGAAGCAATCTTCCATCATTTTTGTGGAAAATTGTTATCTCTCGTCTGAGCTGAGCTGCCTTCTTTATTGTGGGAAGGGGTAAGATTACAAAGGGTAATCTAATTGACTTAAGGAACTTGTGGGAAGGGGTAAGATTACAAAGGGTAATCTAATTGACTTAAGGTAACAAAGACCTAATTTAGCTAAACTGACCTTAAAAAAGACCAAAGAACAAGAGTTAAGATAATTGCGAAGAGAGTCCTAGAATTCAATACATCATGATCCAAAGGGCGTTCAAGAAAAAGACCCTCAGCAACGCTGCTAACTTCCATCTTTTTTGAGTAAGGATTCTGGTCGAGGGCAACATCTTGGAGTAGATTTGATAAGCTGGCCCACTCACTAGCCTCTAGGTCTTTAAGGTTTCTTCTAAAATCAGCTTTCTACCTTCCAAGCTCCTCAGACCAACATTGATCAACAAAAAAGTTACTTGAATTTATAACTCTATGCCTTCTTTAAGAGATTATGTCAAAGGATTTTCAAGCAGTCATGGATCCGCCTACAACAAAATTCTGTCATCTTTACCAAGTTTTGTACCAATTATCCACCTGCAAGAATTCTTAACAATAGAAGGGCAAAGGATTCTAGAGCTTGAAGGACCCTAGGGCTTGCCAACCAACCCCTAGGACAAGATGGTACTTGCCAATAGTGGCTTTCCTCCAAGCATTTGCTTCTAACTTGAGCTTCCAATCTCATTAGAAGGACCAAGTTCCTCTTATTGACGTTGTCAACTCAACCCTGAGGTGCTTCTAGATTCAAGAGCAACTTAATAGTGTTGAAAATAGATTAGGCTGAGAAGGAAAACACATATAAAATACTTTATTTTATACCTTCTTAAGTCTTTAGACATACTTATAAGTGATAATTAATATTGTGAAATTAGAAATTTCACTGAGTTATTGTTTCAATATTATTTGTGTTCATTTTTCTTATGTAGATTTAGGGTTGAATTAAATGCATGTGTAATTTATATGTTTCTTTTGTCTTACATCATACTAAATATTTTACCCTTTAAACTTGTTCTTCAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGGTTGGTTAAATTTCAATTAATGTACTTGATACTTAACCCAAGGCAATCTTTTTCTAGTTTGTTCTTTAGTATAGATTGGTTGAAATCTTTCTTTCGCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGTAAGGTATCCTGTATATGGTCCATGTCTTTGTTTCTTCAACCTTTCTAACCGATATTAGTTCGTTACTAATTTGAGGTTTTGAGCCTTGCGAGTCTAGAAATATCATTACTTGGTTATCTTAATTGGACTACAACTACAGCAGGAAATACCATGTTGTTTTATCTTTGAACATGTCATGCTTATGGTTTTTCTATTCATTTCCTTGGATAACGATACCTTTAAACAAAGGAACATGAGTTAAATGTCTTTTCCTTGCTTTGGAAATCCCTTGCACTTTCTGCTCAGTGTTTCACATGATATGGCCACCCCACCACTCATTACTGAATGCCTAATGGTTCTCTTTCTCAAGGATATTTCTTTGTGGGCTTTTCTAGAAATATAGATTTCTCTTATGTGGAAGCCTTTCTCTTACACACACCCACTCTTCCATGAAACATTTGTATAAGGTAGCTGTATACCTTTGAAAAGTTTAATTTATATTCCTTTCTTGGAGGGGCGAATAGTCAAGTTGTTCATACTTGTCTTGTAAAAAAGTTGTTCTTACTTGTCATATAAAAAGTTGTTCTTATTTTTCTTAAAAAAAGTTCTTCATTTTGGTTGTCCATCTCCAGGAAAAGTTGTGCCAAAAAAGGATGTAGCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAAGTGAGTAAAATTTAGCCAACTTTTATCTGAGGTATATGCTTGCATGCATGCATGTATGTACATTCCTGTGAATGCAATTGCTCTGTTCTGATTTATTTTCCCATTTCTCTTGTGGGAGAGGAGTTTAGTTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGCGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGTAAGTTTAGACTAACTTATTTCTTGTAATTTCATTCCCCCCATGTAGAATTTTTATTATGTTTTTCAATTAAAAAGGAGAGAGAACAGAAGAACCTTCATGTACTTTTTTTTTTTTGAACAAGAACCTTCATGTATCTCTTTTTCATGTATCTTTTTGTAACTTGCTGTTCTTTTGGTTTTAGGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAAAAAAGGTTTAAATATTTTCCATTAACTTTTTCTTTTTATGTGTGCTTCCATGGACTGATGACCATAGCTATCTGTGTTCTGTCATTTGTAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGTATGATCACTTGGTTTAACTATTTTGATAATCATTTTTCTTACAAGATCAAGAGTTTGAGTTAACCTTTTTGAAAAATCCAATCAGTATTCTATAATTTTTTTTATTT

mRNA sequence

ATGGCGGAAGCCAAGCGTCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTAGCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGCGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGTATGATCACTTGGTTTAACTATTTTGATAATCATTTTTCTTACAAGATCAAGAGTTTGAGTTAACCTTTTTGAAAAATCCAATCAGTATTCTATAATTTTTTTTATTT

Coding sequence (CDS)

ATGGCGGAAGCCAAGCGTCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTAGCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGCGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGTATGATCACTTGGTTTAA

Protein sequence

MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEYDHLV

Homology

[Close]

BLAST of Carg18658 vs. NCBI nr
Match: KAG7014259.1 (Structural maintenance of chromosomes protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 561.6 bits (1446), Expect = 3.9e-156
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK
Sbjct: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEYDHLV 290
           KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEYDHLV
Sbjct: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEYDHLV 289

[Close]

BLAST of Carg18658 vs. NCBI nr
Match: XP_022954044.1 (structural maintenance of chromosomes protein 5 isoform X1 [Cucurbita moschata])

HSP 1 Score: 550.1 bits (1416), Expect = 1.2e-152
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK
Sbjct: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE
Sbjct: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 284

[Close]

BLAST of Carg18658 vs. NCBI nr
Match: KAG6575703.1 (Structural maintenance of chromosomes protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 548.9 bits (1413), Expect = 2.6e-152
Identity = 283/284 (99.65%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDV+GIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVSGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK
Sbjct: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE
Sbjct: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 284

[Close]

BLAST of Carg18658 vs. NCBI nr
Match: XP_023547888.1 (structural maintenance of chromosomes protein 5 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 548.5 bits (1412), Expect = 3.4e-152
Identity = 283/284 (99.65%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGN+KEENITITRKMDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNSKEENITITRKMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK
Sbjct: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE
Sbjct: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 284

[Close]

BLAST of Carg18658 vs. NCBI nr
Match: XP_022991849.1 (structural maintenance of chromosomes protein 5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 545.4 bits (1404), Expect = 2.9e-151
Identity = 281/284 (98.94%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAEAK RAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAEAKHRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDV+GIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVSGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELL+KVESMK
Sbjct: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLEKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE
Sbjct: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 284

[Close]

BLAST of Carg18658 vs. ExPASy Swiss-Prot
Match: Q9LFS8 (Structural maintenance of chromosomes protein 5 OS=Arabidopsis thaliana OX=3702 GN=SMC5 PE=2 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 7.5e-126
Identity = 228/281 (81.14%), Postives = 256/281 (91.10%), Query Frame = 0


Query: 4   AKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVC 63
           ++RRAKRP+I+RG+DD++PG+IIEIELHNFMTFNHL CKPGSRLNLVIGPNGSGKSS+VC
Sbjct: 2   SERRAKRPKISRGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSLVC 61

Query: 64  AIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWL 123
           AIAL LGGEPQLLGRATSVGAYVKRGE+SGYV+I+LRGNT+EEN+TI RK+DT NKSEW+
Sbjct: 62  AIALCLGGEPQLLGRATSVGAYVKRGEDSGYVKISLRGNTREENLTIFRKIDTRNKSEWM 121

Query: 124 FNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPI 183
           FNG  V KKD+  IIQ FNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLP+
Sbjct: 122 FNGSTVSKKDIVEIIQKFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPV 181

Query: 184 LHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKL 243
            HR LVEKS D+K +ERAV KNG+TL+QLKAL  EQEKDVERVRQRE  L KV+SMKKKL
Sbjct: 182 HHRALVEKSRDLKQLERAVAKNGETLNQLKALVDEQEKDVERVRQRELFLTKVDSMKKKL 241

Query: 244 PWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           PWLKYDMKKAEYM+ K++ KEA+KKLDEAA  LN +KEPIE
Sbjct: 242 PWLKYDMKKAEYMDAKKRMKEAEKKLDEAAKNLNSMKEPIE 282

[Close]

BLAST of Carg18658 vs. ExPASy Swiss-Prot
Match: Q8CG46 (Structural maintenance of chromosomes protein 5 OS=Mus musculus OX=10090 GN=Smc5 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-45
Identity = 110/265 (41.51%), Postives = 162/265 (61.13%), Query Frame = 0


Query: 11  PRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLG 70
           P + R    ++ GSI+ I + NF+T++  +  PG  LN++IG NG+GKSSIVCAI LGL 
Sbjct: 39  PTLPRPSGTFVEGSIVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLA 98

Query: 71  GEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDT-HNKSEWLFNGKVV 130
           G+P  +GRA  VG +VKRG   G V I L   +   N+ ITR++D   N+S W  N K V
Sbjct: 99  GKPAFMGRADKVGFFVKRGCSKGLVEIELFRTS--GNLIITREIDVIKNQSFWFINKKPV 158

Query: 131 PKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLV 190
            +K V   + + NIQV NL QFLPQD+V EFAKL+ ++LLE TEK+VG P++   H  L 
Sbjct: 159 TQKIVEEQVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSVGPPEMHRYHCELK 218

Query: 191 EKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYD 250
                 K +E + ++  + L+++   N   ++DVER  +R+  L  +E ++ K PW++Y+
Sbjct: 219 NFREKEKQLETSCKEKTEYLEKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYE 278

Query: 251 MKKAEYMEVK---EKEKEAKKKLDE 272
             + EY  VK   ++ KE  +KL E
Sbjct: 279 NVRQEYEGVKLIRDRVKEEVRKLKE 301

[Close]

BLAST of Carg18658 vs. ExPASy Swiss-Prot
Match: Q8IY18 (Structural maintenance of chromosomes protein 5 OS=Homo sapiens OX=9606 GN=SMC5 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-44
Identity = 109/274 (39.78%), Postives = 165/274 (60.22%), Query Frame = 0


Query: 4   AKRRAKRPR--ITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSI 63
           +KR+   P+  + +    ++ GSI+ I + NF+T++  +  PG  LN+++G NG+GKSSI
Sbjct: 30  SKRKNSAPQLPLLQSSGPFVEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSI 89

Query: 64  VCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMD-THNKS 123
           VCAI LGL G+P  +GRA  VG +VKRG   G V I L       N+ ITR++D   N+S
Sbjct: 90  VCAICLGLAGKPAFMGRADKVGFFVKRGCSRGMVEIEL--FRASGNLVITREIDVAKNQS 149

Query: 124 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 183
            W  N K   +K V   + + NIQV NL QFLPQD+V EFAKL+ ++LLE TEK++G P+
Sbjct: 150 FWFINKKSTTQKIVEEKVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPE 209

Query: 184 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 243
           +   H  L       K +E + ++  + L ++   N   ++DVER  +R+  L  +E ++
Sbjct: 210 MHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLE 269

Query: 244 KKLPWLKYDMKKAEYMEVK---EKEKEAKKKLDE 272
            K PW++Y+  + EY EVK   ++ KE  +KL E
Sbjct: 270 AKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKE 301

[Close]

BLAST of Carg18658 vs. ExPASy Swiss-Prot
Match: Q802R9 (Structural maintenance of chromosomes protein 5 OS=Takifugu rubripes OX=31033 GN=smc5 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.1e-43
Identity = 100/250 (40.00%), Postives = 155/250 (62.00%), Query Frame = 0


Query: 21  MPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRAT 80
           M GSI+ I + NF+T+++ +  PG  LN+++G NG+GKSSIVCAI LGL G+  +LGR  
Sbjct: 40  MDGSILRITMRNFLTYDYTEVYPGPNLNMIVGANGTGKSSIVCAICLGLAGKTAVLGRGD 99

Query: 81  SVGAYVKRGEESGYVRITLRGNTKEENITITRKMDT-HNKSEWLFNGKVVPKKDVAGIIQ 140
            VG YVKRG + G + I L  +    N+ ITR++   +N+S W+ NGK   +K V   ++
Sbjct: 100 KVGLYVKRGCQKGSIEIELYKH--GGNLVITREIHVENNQSHWMINGKQRNQKAVEEEVK 159

Query: 141 SFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIE 200
           +  IQV+NL QFLPQ++V EFAK++  +LLE TEK+VG P++   H  L       + +E
Sbjct: 160 NLCIQVSNLCQFLPQEKVGEFAKMSKTELLEATEKSVGPPEMFEFHCELKNFRSKERELE 219

Query: 201 RAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYDMKKAEYMEVK 260
             V +    +++ K  N   + DV R  +++  L  +E ++KK PW++Y+  + E   VK
Sbjct: 220 NTVTEKTKYIEKAKQRNERNKHDVNRYYEKKRHLDMIELLEKKKPWVEYESTRKELESVK 279

Query: 261 EKEKEAKKKL 270
            + +EAK+ L
Sbjct: 280 REREEAKRNL 287

[Close]

BLAST of Carg18658 vs. ExPASy Swiss-Prot
Match: Q5ZJY5 (Structural maintenance of chromosomes protein 5 OS=Gallus gallus OX=9031 GN=SMC5 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-42
Identity = 99/262 (37.79%), Postives = 162/262 (61.83%), Query Frame = 0


Query: 23  GSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSV 82
           GSI+ I + NF+T++  + +PG  LN++IG NG+GKSSIVCAI LGL G+P  LGRA  V
Sbjct: 30  GSIVRIYMENFLTYDICEVRPGPNLNMIIGANGTGKSSIVCAICLGLAGKPSFLGRAEKV 89

Query: 83  GAYVKRGEESGYVRITLRGNTKEENITITRKMD-THNKSEWLFNGKVVPKKDVAGIIQSF 142
           G +VK+G   G V I L      ENI ITR++    N S W  N K+   K V   + + 
Sbjct: 90  GLFVKQGCLKGLVEIEL--FKVPENIIITREIQVVTNTSTWHINRKLTTLKTVEEQVAAL 149

Query: 143 NIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERA 202
           NIQV+NL QFLPQD+V EFA+++ ++LLE TEK++G P++   H  L       + +E  
Sbjct: 150 NIQVDNLCQFLPQDKVGEFARMSKIELLEATEKSIGPPEMYQFHCKLKSLKEKERELENV 209

Query: 203 VEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYDMKKAEYMEVKEK 262
            +   ++L+++K      ++DV+R  + +  L  ++ +++K PW++Y+  + ++ +VK++
Sbjct: 210 CKDKVNSLEKMKQRAERYKQDVDRYHECKRHLDLIDMLQRKRPWVEYETVRQQHEDVKQR 269

Query: 263 EKEAKKKLDEAANTLNDLKEPI 284
             +AK++L      L +++ P+
Sbjct: 270 RDQAKEEL----KNLKEMQSPL 285

[Close]

BLAST of Carg18658 vs. ExPASy TrEMBL
Match: A0A6J1GRQ5 (Structural maintenance of chromosomes protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111456423 PE=3 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.7e-153
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK
Sbjct: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE
Sbjct: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 284

[Close]

BLAST of Carg18658 vs. ExPASy TrEMBL
Match: A0A6J1JVZ1 (Structural maintenance of chromosomes protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111488372 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.4e-151
Identity = 281/284 (98.94%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAEAK RAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAEAKHRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDV+GIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVSGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELL+KVESMK
Sbjct: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLEKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE
Sbjct: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 284

[Close]

BLAST of Carg18658 vs. ExPASy TrEMBL
Match: A0A5A7UYJ7 (Structural maintenance of chromosomes protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00560 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 8.8e-146
Identity = 269/284 (94.72%), Postives = 278/284 (97.89%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAE++ RAKRPRITRG+DDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 77  MAESEHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 136

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEE ITITRKMDTHNKS
Sbjct: 137 IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKS 196

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDVAG+IQ FNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 197 EWLFNGKVVPKKDVAGVIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 256

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHR LV+KSH IK+IERAVEKNG+TLDQLKALNVEQEKDVE VRQR+ELLKKVESMK
Sbjct: 257 LPILHRALVDKSHGIKSIERAVEKNGETLDQLKALNVEQEKDVEHVRQRDELLKKVESMK 316

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           KKLPWLKYDMKKAEY+EVKEKEKEAKKKLDEAANTLNDLKEPIE
Sbjct: 317 KKLPWLKYDMKKAEYLEVKEKEKEAKKKLDEAANTLNDLKEPIE 360

[Close]

BLAST of Carg18658 vs. ExPASy TrEMBL
Match: A0A1S3CE57 (Structural maintenance of chromosomes protein 5 OS=Cucumis melo OX=3656 GN=LOC103499955 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 8.8e-146
Identity = 269/284 (94.72%), Postives = 278/284 (97.89%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAE++ RAKRPRITRG+DDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAESEHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEE ITITRKMDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDVAG+IQ FNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVAGVIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LPILHR LV+KSH IK+IERAVEKNG+TLDQLKALNVEQEKDVE VRQR+ELLKKVESMK
Sbjct: 181 LPILHRALVDKSHGIKSIERAVEKNGETLDQLKALNVEQEKDVEHVRQRDELLKKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           KKLPWLKYDMKKAEY+EVKEKEKEAKKKLDEAANTLNDLKEPIE
Sbjct: 241 KKLPWLKYDMKKAEYLEVKEKEKEAKKKLDEAANTLNDLKEPIE 284

[Close]

BLAST of Carg18658 vs. ExPASy TrEMBL
Match: A0A6J1CY66 (Structural maintenance of chromosomes protein 5 OS=Momordica charantia OX=3673 GN=LOC111015339 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.0e-145
Identity = 269/288 (93.40%), Postives = 279/288 (96.88%), Query Frame = 0


Query: 1   MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60
           MAE++ RAKRPRITRG+DDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS
Sbjct: 1   MAESEHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSS 60

Query: 61  IVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKS 120
           IVCAIALGLGGEPQLLGRATS+GAYVKRGEESGYVRITLRG+TKEENITI R+MDTHNKS
Sbjct: 61  IVCAIALGLGGEPQLLGRATSIGAYVKRGEESGYVRITLRGSTKEENITIMRRMDTHNKS 120

Query: 121 EWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180
           EWLFNGKVVPKKDVAGIIQ FNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ
Sbjct: 121 EWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQ 180

Query: 181 LPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMK 240
           LP+LHR LVEKS DIKN+ERAVEKNGDTLDQLKALNVEQEKDVERVRQR+ELLKKVESMK
Sbjct: 181 LPMLHRALVEKSRDIKNMERAVEKNGDTLDQLKALNVEQEKDVERVRQRDELLKKVESMK 240

Query: 241 KKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEYDHL 289
           KKLPWLKYDMKKAEYMEVKEKEK+AKKKLDEAA TLNDLKEPIE   L
Sbjct: 241 KKLPWLKYDMKKAEYMEVKEKEKDAKKKLDEAAKTLNDLKEPIEKQKL 288

[Close]

BLAST of Carg18658 vs. TAIR 10
Match: AT5G15920.1 (structural maintenance of chromosomes 5 )

HSP 1 Score: 451.4 bits (1160), Expect = 5.3e-127
Identity = 228/281 (81.14%), Postives = 256/281 (91.10%), Query Frame = 0


Query: 4   AKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVC 63
           ++RRAKRP+I+RG+DD++PG+IIEIELHNFMTFNHL CKPGSRLNLVIGPNGSGKSS+VC
Sbjct: 2   SERRAKRPKISRGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSLVC 61

Query: 64  AIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWL 123
           AIAL LGGEPQLLGRATSVGAYVKRGE+SGYV+I+LRGNT+EEN+TI RK+DT NKSEW+
Sbjct: 62  AIALCLGGEPQLLGRATSVGAYVKRGEDSGYVKISLRGNTREENLTIFRKIDTRNKSEWM 121

Query: 124 FNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPI 183
           FNG  V KKD+  IIQ FNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLP+
Sbjct: 122 FNGSTVSKKDIVEIIQKFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPV 181

Query: 184 LHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKL 243
            HR LVEKS D+K +ERAV KNG+TL+QLKAL  EQEKDVERVRQRE  L KV+SMKKKL
Sbjct: 182 HHRALVEKSRDLKQLERAVAKNGETLNQLKALVDEQEKDVERVRQRELFLTKVDSMKKKL 241

Query: 244 PWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIE 285
           PWLKYDMKKAEYM+ K++ KEA+KKLDEAA  LN +KEPIE
Sbjct: 242 PWLKYDMKKAEYMDAKKRMKEAEKKLDEAAKNLNSMKEPIE 282

[Close]

BLAST of Carg18658 vs. TAIR 10
Match: AT5G07660.1 (structural maintenance of chromosomes 6A )

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-10
Identity = 70/287 (24.39%), Postives = 135/287 (47.04%), Query Frame = 0


Query: 17  DDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLL 76
           D     G I+ I L NFM  ++L+ + G  +N + G NGSGKS+I+ A+ +  G   +  
Sbjct: 15  DQQTSSGKILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGT 74

Query: 77  GRATSVGAYVKRGEESGYVRITLRGNTKE--------ENITITRKMDTHNKSEWL--FNG 136
            RA ++  ++K G     V + L+   ++        + + I R++        L    G
Sbjct: 75  QRAATLKDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQG 134

Query: 137 KVVP--KKDVAGIIQSFNIQVNNLTQFLPQDRVCEFA-------------KLTPVQLLEE 196
           + +   K+++  +++ +NI V N    + QD+  EF              K T +Q +++
Sbjct: 135 RKISSRKEELRELVEHYNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVDD 194

Query: 197 TEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREE 256
             +++G  +L   + +L E    IK IE+ + +            +E+ K++E V   EE
Sbjct: 195 ILQSIG-TKLNSANALLDEMEKTIKPIEKEINE-----------LLEKIKNMEHV---EE 254

Query: 257 LLKKVESMKKKLPW-LKYDMKKAEYMEVKEKEKEAKKKLDEAANTLN 278
           + ++V  +KKKL W   YD+ + +  E  EK  + K+++    N ++
Sbjct: 255 ITQQVLHLKKKLAWSWVYDVDR-QLKEQNEKIVKFKERVPTCQNKID 285

[Close]

BLAST of Carg18658 vs. TAIR 10
Match: AT5G61460.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-09
Identity = 65/293 (22.18%), Postives = 137/293 (46.76%), Query Frame = 0


Query: 23  GSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSV 82
           GSI+ I++ NFM  ++L+ + G  +N + G NGSGKS+I+ A+ +  G   +   RA ++
Sbjct: 20  GSILRIKVENFMCHSNLQIEFGEWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATL 79

Query: 83  GAYVKRGEESGYVRITLRGNTKEE-------NITITRKMDTHNKSEWL---FNGKVVPKK 142
             ++K G     V++ ++ + ++         + I  +  T + +  +   + GK V  K
Sbjct: 80  KDFIKTGCSYAVVQVEMKNSGEDAFKPEIYGGVIIIERRITESATATVLKDYLGKKVSNK 139

Query: 143 --DVAGIIQSFNIQVNNLTQFLPQDRVCEFA-------------KLTPVQLLEETEKAVG 202
             ++  +++ FNI V N    + QD+  EF              K T +Q + +  +++ 
Sbjct: 140 RDELRELVEHFNIDVENPCVVMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIY 199

Query: 203 DPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVE 262
           +  L     ++ E  + IK IE+ +               E    ++ + Q EE+ ++++
Sbjct: 200 E-HLTKATAIVDELENTIKPIEKEIS--------------ELRGKIKNMEQVEEIAQRLQ 259

Query: 263 SMKKKLPW-LKYDMKK------AEYMEVKEKEKEAKKKLDEAANTLNDLKEPI 284
            +KKKL W   YD+ +       + +++KE+    + K+D     +  L++ +
Sbjct: 260 QLKKKLAWSWVYDVDRQLQEQTEKIVKLKERIPTCQAKIDWELGKVESLRDTL 297

[Close]

BLAST of Carg18658 vs. TAIR 10
Match: AT3G54670.1 (Structural maintenance of chromosomes (SMC) family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 71/284 (25.00%), Postives = 128/284 (45.07%), Query Frame = 0


Query: 23  GSIIEIELHNFMTF-NHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEP-QLLGRAT 82
           G I+++E+ NF ++  H    P      +IGPNGSGKS+++ AI+  LG    QL G   
Sbjct: 9   GKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQL 68

Query: 83  S--VGAYVKRGEE----SGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDV 142
              + A+  R +E      +VR+  + +   E +  TR + +   SE+  + +VV   + 
Sbjct: 69  KDLIYAFDDRDKEQRGRKAFVRLVYQMDDGVE-LRFTRSITSAGGSEYRIDNRVVNLDEY 128

Query: 143 AGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHD 202
            G ++S  I V      + Q  V   A   P +L    E+  G  +L   +  L EK   
Sbjct: 129 NGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEGLEEKKAS 188

Query: 203 IKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKY----DM 262
            +     + +   T+   K L   Q+++ E+  + +E LK ++  +++  W  Y    D+
Sbjct: 189 AEEKAALIYQKKKTIGNEKKLKKAQKEEAEKHLRLQEELKALK--RERFLWQLYNIENDI 248

Query: 263 KKAE-------------YMEVKEKEKEAKKKLDEAANTLNDLKE 282
           +KA                E+++ E+EA K+  E A  L ++ +
Sbjct: 249 EKANEDVDSEKSNRKDVMRELEKFEREAGKRKVEQAKYLKEIAQ 289

[Close]

BLAST of Carg18658 vs. TAIR 10
Match: AT3G54670.3 (Structural maintenance of chromosomes (SMC) family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 71/284 (25.00%), Postives = 128/284 (45.07%), Query Frame = 0


Query: 23  GSIIEIELHNFMTF-NHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEP-QLLGRAT 82
           G I+++E+ NF ++  H    P      +IGPNGSGKS+++ AI+  LG    QL G   
Sbjct: 9   GKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQL 68

Query: 83  S--VGAYVKRGEE----SGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDV 142
              + A+  R +E      +VR+  + +   E +  TR + +   SE+  + +VV   + 
Sbjct: 69  KDLIYAFDDRDKEQRGRKAFVRLVYQMDDGVE-LRFTRSITSAGGSEYRIDNRVVNLDEY 128

Query: 143 AGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHD 202
            G ++S  I V      + Q  V   A   P +L    E+  G  +L   +  L EK   
Sbjct: 129 NGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEGLEEKKAS 188

Query: 203 IKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKY----DM 262
            +     + +   T+   K L   Q+++ E+  + +E LK ++  +++  W  Y    D+
Sbjct: 189 AEEKAALIYQKKKTIGNEKKLKKAQKEEAEKHLRLQEELKALK--RERFLWQLYNIENDI 248

Query: 263 KKAE-------------YMEVKEKEKEAKKKLDEAANTLNDLKE 282
           +KA                E+++ E+EA K+  E A  L ++ +
Sbjct: 249 EKANEDVDSEKSNRKDVMRELEKFEREAGKRKVEQAKYLKEIAQ 289

The following BLAST results are available for this feature:

BLAST of Carg18658 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014259.1	3.9e-156	100.00	Structural maintenance of chromosomes protein 5, partial [Cucurbita argyrosperma...	[more]
XP_022954044.1	1.2e-152	100.00	structural maintenance of chromosomes protein 5 isoform X1 [Cucurbita moschata]	[more]
KAG6575703.1	2.6e-152	99.65	Structural maintenance of chromosomes protein 5, partial [Cucurbita argyrosperma...	[more]
XP_023547888.1	3.4e-152	99.65	structural maintenance of chromosomes protein 5 isoform X1 [Cucurbita pepo subsp...	[more]
XP_022991849.1	2.9e-151	98.94	structural maintenance of chromosomes protein 5 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg18658 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFS8	7.5e-126	81.14	Structural maintenance of chromosomes protein 5 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8CG46	2.2e-45	41.51	Structural maintenance of chromosomes protein 5 OS=Mus musculus OX=10090 GN=Smc5...	[more]
Q8IY18	1.1e-44	39.78	Structural maintenance of chromosomes protein 5 OS=Homo sapiens OX=9606 GN=SMC5 ...	[more]
Q802R9	6.1e-43	40.00	Structural maintenance of chromosomes protein 5 OS=Takifugu rubripes OX=31033 GN...	[more]
Q5ZJY5	2.3e-42	37.79	Structural maintenance of chromosomes protein 5 OS=Gallus gallus OX=9031 GN=SMC5...	[more]

BLAST of Carg18658 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRQ5	5.7e-153	100.00	Structural maintenance of chromosomes protein 5 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JVZ1	1.4e-151	98.94	Structural maintenance of chromosomes protein 5 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7UYJ7	8.8e-146	94.72	Structural maintenance of chromosomes protein 5 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CE57	8.8e-146	94.72	Structural maintenance of chromosomes protein 5 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CY66	2.0e-145	93.40	Structural maintenance of chromosomes protein 5 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg18658 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15920.1	5.3e-127	81.14	structural maintenance of chromosomes 5	[more]
AT5G07660.1	3.1e-10	24.39	structural maintenance of chromosomes 6A	[more]
AT5G61460.1	2.0e-09	22.18	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G54670.1	1.4e-07	25.00	Structural maintenance of chromosomes (SMC) family protein	[more]
AT3G54670.3	1.4e-07	25.00	Structural maintenance of chromosomes (SMC) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 195..229
None	No IPR available	COILS	Coil	Coil	coord: 248..279
None	No IPR available	CDD	cd03277	ABC_SMC5_euk	coord: 23..180 e-value: 3.18881E-59 score: 186.262
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 24..284 e-value: 5.6E-31 score: 110.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 25..281
IPR038729	Rad50/SbcC-type AAA domain	PFAM	PF13476	AAA_23	coord: 28..281 e-value: 8.6E-20 score: 72.1
IPR027131	Structural maintenance of chromosomes protein 5	PANTHER	PTHR45916	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5	coord: 19..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18658-RA	Carg18658-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030915	Smc5-Smc6 complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity