Carg18655 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18655
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Auxin response factor
Location	Carg_Chr12: 12002386 .. 12002736 (-)
RNA-Seq Expression	Carg18655
Synteny	Carg18655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATGGTTATTTTGTGTTCTGAACCAGGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAAGTAGGTTAGCCACTCAATAAGTGTTCGATTCATTTATACATTCAAATAATTTGGTTGTTAATACAATATTCTGTTTTGCAGTATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGTGCGCATCACATCTCGTATTCTTTAA

mRNA sequence

ATGAGATGGTTATTTTGTGTTCTGAACCAGGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGTGCGCATCACATCTCGTATTCTTTAA

Coding sequence (CDS)

ATGAGATGGTTATTTTGTGTTCTGAACCAGGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGTGCGCATCACATCTCGTATTCTTTAA

Protein sequence

MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLVRITSRIL

Homology

[Close]

BLAST of Carg18655 vs. NCBI nr
Match: KAG7021362.1 (Auxin response factor 19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.1 bits (466), Expect = 5.2e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASD 60
          MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASD
Sbjct: 1  MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASD 60

Query: 61 TSTHGGFSVPRRAAEKIFPPLVRITSRIL 90
          TSTHGGFSVPRRAAEKIFPPLVRITSRIL
Sbjct: 61 TSTHGGFSVPRRAAEKIFPPLVRITSRIL 89

[Close]

BLAST of Carg18655 vs. NCBI nr
Match: XP_022965393.1 (auxin response factor 19-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 83  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 142

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 143 FSVPRRAAEKIFPPL 157

[Close]

BLAST of Carg18655 vs. NCBI nr
Match: XP_022937522.1 (auxin response factor 19-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 83  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 142

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 143 FSVPRRAAEKIFPPL 157

[Close]

BLAST of Carg18655 vs. NCBI nr
Match: XP_022937523.1 (auxin response factor 19-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 81  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 140

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 141 FSVPRRAAEKIFPPL 155

[Close]

BLAST of Carg18655 vs. NCBI nr
Match: XP_023538355.1 (auxin response factor 19-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 81  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 140

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 141 FSVPRRAAEKIFPPL 155

[Close]

BLAST of Carg18655 vs. ExPASy Swiss-Prot
Match: Q8RYC8 (Auxin response factor 19 OS=Arabidopsis thaliana OX=3702 GN=ARF19 PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 4.3e-32
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     AD ETDEVYAQMTLQPVNKY++EALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 74  LICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTAS 133

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 134 DTSTHGGFSVPRRAAEKIFPPL 155

[Close]

BLAST of Carg18655 vs. ExPASy Swiss-Prot
Match: A3B9A0 (Auxin response factor 16 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF16 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-31
Identity = 63/71 (88.73%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 11  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVP 70
           AD ETDEVYAQMTLQPVNKY+++A+LAS++GLKQN+QPAEFFCKTLTASDTSTHGGFSVP
Sbjct: 86  ADSETDEVYAQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVP 145

Query: 71  RRAAEKIFPPL 82
           RRAAEKIFPPL
Sbjct: 146 RRAAEKIFPPL 156

[Close]

BLAST of Carg18655 vs. ExPASy Swiss-Prot
Match: P93022 (Auxin response factor 7 OS=Arabidopsis thaliana OX=3702 GN=ARF7 PE=1 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-31
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 75  LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFP L
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPAL 156

[Close]

BLAST of Carg18655 vs. ExPASy Swiss-Prot
Match: A2YAA5 (Auxin response factor 16 OS=Oryza sativa subsp. indica OX=39946 GN=ARF16 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-31
Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 11  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVP 70
           AD ETDEVY QMTLQPVNKY+++A+LAS++GLKQN+QPAEFFCKTLTASDTSTHGGFSVP
Sbjct: 86  ADSETDEVYVQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVP 145

Query: 71  RRAAEKIFPPL 82
           RRAAEKIFPPL
Sbjct: 146 RRAAEKIFPPL 156

[Close]

BLAST of Carg18655 vs. ExPASy Swiss-Prot
Match: Q6Z2W3 (Auxin response factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF5 PE=2 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-27
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADP+TDEVYAQMTLQPVN Y KEAL  S++ LKQ R   EFFCKTLTAS
Sbjct: 96  LICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQMEFFCKTLTAS 155

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 156 DTSTHGGFSVPRRAAEKIFPPL 177

[Close]

BLAST of Carg18655 vs. ExPASy TrEMBL
Match: A0A6J1HNK0 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 83  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 142

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 143 FSVPRRAAEKIFPPL 157

[Close]

BLAST of Carg18655 vs. ExPASy TrEMBL
Match: A0A6J1HQV9 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 81  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 140

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 141 FSVPRRAAEKIFPPL 155

[Close]

BLAST of Carg18655 vs. ExPASy TrEMBL
Match: A0A6J1HNS5 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 83  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 142

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 143 FSVPRRAAEKIFPPL 157

[Close]

BLAST of Carg18655 vs. ExPASy TrEMBL
Match: A0A6J1FG93 (Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111443911 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 81  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 140

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 141 FSVPRRAAEKIFPPL 155

[Close]

BLAST of Carg18655 vs. ExPASy TrEMBL
Match: A0A6J1FBF6 (Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111443911 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 83  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 142

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 143 FSVPRRAAEKIFPPL 157

[Close]

BLAST of Carg18655 vs. TAIR 10
Match: AT1G19220.1 (auxin response factor 19 )

HSP 1 Score: 138.3 bits (347), Expect = 3.1e-33
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     AD ETDEVYAQMTLQPVNKY++EALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 74  LICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTAS 133

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 134 DTSTHGGFSVPRRAAEKIFPPL 155

[Close]

BLAST of Carg18655 vs. TAIR 10
Match: AT5G20730.1 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related )

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-32
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 75  LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFP L
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPAL 156

[Close]

BLAST of Carg18655 vs. TAIR 10
Match: AT5G20730.2 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related )

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-32
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 75  LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFP L
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPAL 156

[Close]

BLAST of Carg18655 vs. TAIR 10
Match: AT5G20730.3 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related )

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-32
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 75  LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFP L
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPAL 156

[Close]

BLAST of Carg18655 vs. TAIR 10
Match: AT1G30330.1 (auxin response factor 6 )

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 7   VLNQADPETDEVYAQMTLQPVNKYE-KEALLASDIGLKQNRQPAEFFCKTLTASDTSTHG 66
           V   AD ETDEVYAQMTLQP+N  E K+  L +++G+  +RQP  +FCKTLTASDTSTHG
Sbjct: 82  VTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGV-PSRQPTNYFCKTLTASDTSTHG 141

Query: 67  GFSVPRRAAEKIFPPL 82
           GFSVPRRAAEK+FPPL
Sbjct: 142 GFSVPRRAAEKVFPPL 156

The following BLAST results are available for this feature:

BLAST of Carg18655 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021362.1	5.2e-43	100.00	Auxin response factor 19, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022965393.1	2.4e-32	96.00	auxin response factor 19-like isoform X1 [Cucurbita maxima]	[more]
XP_022937522.1	2.4e-32	96.00	auxin response factor 19-like isoform X1 [Cucurbita moschata]	[more]
XP_022937523.1	2.4e-32	96.00	auxin response factor 19-like isoform X2 [Cucurbita moschata]	[more]
XP_023538355.1	2.4e-32	96.00	auxin response factor 19-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18655 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RYC8	4.3e-32	82.93	Auxin response factor 19 OS=Arabidopsis thaliana OX=3702 GN=ARF19 PE=1 SV=2	[more]
A3B9A0	1.3e-31	88.73	Auxin response factor 16 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF16 PE=2 ...	[more]
P93022	1.6e-31	81.71	Auxin response factor 7 OS=Arabidopsis thaliana OX=3702 GN=ARF7 PE=1 SV=2	[more]
A2YAA5	3.6e-31	87.32	Auxin response factor 16 OS=Oryza sativa subsp. indica OX=39946 GN=ARF16 PE=2 SV...	[more]
Q6Z2W3	1.1e-27	75.61	Auxin response factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF5 PE=2 SV...	[more]

BLAST of Carg18655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HNK0	1.2e-32	96.00	Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1	[more]
A0A6J1HQV9	1.2e-32	96.00	Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1	[more]
A0A6J1HNS5	1.2e-32	96.00	Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1	[more]
A0A6J1FG93	1.2e-32	96.00	Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111443911 PE=3 SV=1	[more]
A0A6J1FBF6	1.2e-32	96.00	Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111443911 PE=3 SV=1	[more]

BLAST of Carg18655 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19220.1	3.1e-33	82.93	auxin response factor 19	[more]
AT5G20730.1	1.2e-32	81.71	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat...	[more]
AT5G20730.2	1.2e-32	81.71	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat...	[more]
AT5G20730.3	1.2e-32	81.71	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat...	[more]
AT1G30330.1	1.3e-23	69.74	auxin response factor 6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 49..87 e-value: 4.3E-11 score: 44.5
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 41..84
None	No IPR available	PANTHER	PTHR31384:SF21	AUXIN RESPONSE FACTOR 19	coord: 7..81
IPR044835	Auxin response factor	PANTHER	PTHR31384	AUXIN RESPONSE FACTOR 4-RELATED	coord: 7..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18655-RA	Carg18655-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding