Carg18637 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18637
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S3
Location	Carg_Chr12: 11920057 .. 11923136 (+)
RNA-Seq Expression	Carg18637
Synteny	Carg18637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCGTTTCTTCCTCTGGAACGCGCGAAGAACAGAGCTTTCTCTTCTCACAACTTCGATCTTTTACGAGCGGATTTATTTCTCTTTTTCCAAACTCTCTTTGAGAATGGCGACCCAGATGAGTAAGAAGAGAAAGGTCAGTCCTTGAAATTTCTTAATTTATACTTATTTCCCCGCCATCTCTACAACAATTGTTCTGTTCTGTAATGTTTTTGAGTTGATTATGGTTTGTGTTCGATTATGTTTCAGTTCGTTGCCGATGGAGTGTTTTTTGCCGAGCTTAACGAGGTTTTGACCAGAGAGTTGGCTGAGGATGGATACTCCGGTGTCGAGGTTAGAGTTACTCCTATGCGCACTGAGATCATCATCCGAGCCACCCGCACTCAAAACGTTCTCGGTTAGGTTACTTTGATTTTGAAATTCAGTTTATTAAACAGACTTCCTTTTTCCTGAATTGGATTAAACGTCTTAGATTAGCACTCATCGATATCGCGTTAGTGATTTTCTTCGAAAATTTTATTTGGTGTTGTATAGGAGAAAAGGGTAGGAGGATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTTTACGCCGAGAAAGTTAACAACAGAGGGCTTTGTGCCATTGCCCAAGCTGAGTCTCTTCGCTACAAGCTACTTGGTGGCCTTGCTGTGCGGAGGTACTTTTTTGTTTTCCATCCCATAATTATTAGAAGCATTATTATTATTGGTGTGTTATTGATTTGGCATAGAAATGGATCTATGTTTTATGATAATGATAGAATAAAAAGATCACTGATTCCTTATTTTCTTGCGAACAGCTCTGATATATGTAGTATTTTGATCATTCTATCAATCACATTTAAGATATGACTTGTAGTTTCATAAGACTTGTTTTTTTTTCCTGGGTTCTTATGTATGTCATCTACAAAGCAGATTGGTGTTTTGGTGCCAACTTTGTGTCGGATGGTGACAATATAAATTGATCTCTTCCATTTGATAATTATTGTGGAATCATTTTGTTTCGCACTGCAATCATAGGGAGGGACATGCTGCTGCCTGGTGGTATATTTAGCCTTCTTTGTCTGCAGCTTGTGATTTTTGTGTCTCTTCTTATTTTAATGTTTTCAAAGGATGAAGAGTAAGAGTAAGCCTCAGTTTTATTTAATGTAAACTGTGCAAATCATAAAAATATACAATCAAGTATTATCATGCACAATGTTTTTATTAAAGTACAAACAAATCACACCTATCAATTATCACTTTCTTAAATACATATCATACAAGGTTATTTTTAATATCAATAGTAGCTAGGAAGCTTGGGCACTTCGTTTGACAGAGCTTCCAATAGGGTACAATCCAAACTATTGAAAAGAAGTCCCTTCTTTTAATTTTTGTTTTTAATTTTAGACATGGGACATGCAAACGTGTCTTCCTTGGGAATTTCTGTGGCAAGCTAGAGTGTGTGCGGTGTTGTGGGGTCTTTAAGGGAGATGAATAATAGAATCTTTAGGAGAGTTGGGAGTGGTCTTTCTGATGAGCGGTTTCTTGATTGTAGCTCATTTCTATAGTGGGATGTCCTTTTTTGAGCTTTTTTTTTTAATGCCCTTGAAATAATTATAAAAGTGCTGCTTCCTTGAAATAATTACGGGGTAACAAACATTTAGGCTAGCCCATTATTATGCTCATTTCCCAATCCATTGCTCATCTTATTATGACCAAACCTAAAATTTAATCCAACCTTAAAACACCATCTGACAGGCAGAAAGAAATTGTGACGTGATGTACACTTGGTTCATTGCCAAGTCTTCTTTTTTTTTTTTCTTTTGGTATTGAATTTGCATGTTTTCAAGTATTGAATAGATCAATGTATACACAATCCTCAGAAAAAATGTGCCCAAAATGCCAACGTCCTGCCTTTCCAGACGTTGACATGTTACTGCGTCCAGGCTTCTTCAATTATTATTCAAATTGACTTGTAGCCTTGAGTGAGCCTCGTGGTTTGAAAACACAGTTGTCATTAGTATATCAACCTTTTCTATTAATAATATATTTGCATATACACATGGAAACTTTATAGCTTTGAAGAATGGGCATATCAATATTGTTCTTTTTCTTATTATTAAATTTGATACATGAACTTTGTGGTTTGTGCGTTCTTGTGGATGTGCTTGTCCTTTACTCAAGGCTGGAGCTTTCCTACGAATTTCCCTTTTATTAATAGTTTTAACAAGTTCAAAGTTCATTTTTGAGCCTATGGGGTTCCATTTTATTGATCTTCTGACTGAGCTATTATAAGTGAGTATCAAAATGAATACATAATATAATACGACCCATGCTGATGTATGTACTTTTTCCATCAGGGCATGCTATGGTGTCTTGAGATTCGTTATGGAAAGTGGAGCAAAGGGATGCGAGGTTAGCTTGTAGCTCAATCCATTATTATCGCTATATGAATTTTTTTTTTATATGGGAATGTCATTCACACAGGTGATTGTTAGTGGAAAACTGAGGGCACAGCGTGCAAAGTCTATGAAGTTCAAAGATGGATATATGATATCTTCTGGTCAACCAGTGAGAGATTATATCGACTCGGCTGTTAGACACGTTCTTCTCAGACAGGTTAGGTTCGAGTCGAGTTCATACTAATAAAGCAAGAAGGCAGTGTGTTTATACGATGAAGTATAATGTTAATTGTGTGTTTTGGGTGTCTCAGGGAGTTCTGGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCCAAGGGCAAACAAGGCCCTACCACCCCTCTTCCTGATGTTGTGGTAATCCATTCCCCCAAGGAGGAAGAAGAAATCGTGCATAGACCAGCAGCAGCAGCAGCACCACCAGTTTTGAGCGCTGATATTGAGGTTGTTCCAGAAGTAGTAATAGCAGCTTGAGAGGGCTTCTTATCTAGATATTCATCTCTTGGTTTGAGCGTTCTTTTTGATAATCAAACATAATGCATGTGAACAACAGTTTGTAACATTTTTTTTTGCTTAATCATTATTTATTTTGGACTCCTCTTGATTTT

mRNA sequence

GCAGCGTTTCTTCCTCTGGAACGCGCGAAGAACAGAGCTTTCTCTTCTCACAACTTCGATCTTTTACGAGCGGATTTATTTCTCTTTTTCCAAACTCTCTTTGAGAATGGCGACCCAGATGAGTAAGAAGAGAAAGTTCGTTGCCGATGGAGTGTTTTTTGCCGAGCTTAACGAGGTTTTGACCAGAGAGTTGGCTGAGGATGGATACTCCGGTGTCGAGGTTAGAGTTACTCCTATGCGCACTGAGATCATCATCCGAGCCACCCGCACTCAAAACGTTCTCGGAGAAAAGGGTAGGAGGATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTTTACGCCGAGAAAGTTAACAACAGAGGGCTTTGTGCCATTGCCCAAGCTGAGTCTCTTCGCTACAAGCTACTTGGTGGCCTTGCTGTGCGGAGGGCATGCTATGGTGTCTTGAGATTCGTTATGGAAAGTGGAGCAAAGGGATGCGAGGTGATTGTTAGTGGAAAACTGAGGGCACAGCGTGCAAAGTCTATGAAGTTCAAAGATGGATATATGATATCTTCTGGTCAACCAGTGAGAGATTATATCGACTCGGCTGTTAGACACGTTCTTCTCAGACAGGGAGTTCTGGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCCAAGGGCAAACAAGGCCCTACCACCCCTCTTCCTGATGTTGTGGTAATCCATTCCCCCAAGGAGGAAGAAGAAATCGTGCATAGACCAGCAGCAGCAGCAGCACCACCAGTTTTGAGCGCTGATATTGAGGTTGTTCCAGAAGTAGTAATAGCAGCTTGAGAGGGCTTCTTATCTAGATATTCATCTCTTGGTTTGAGCGTTCTTTTTGATAATCAAACATAATGCATGTGAACAACAGTTTGTAACATTTTTTTTTGCTTAATCATTATTTATTTTGGACTCCTCTTGATTTT

Coding sequence (CDS)

ATGGCGACCCAGATGAGTAAGAAGAGAAAGTTCGTTGCCGATGGAGTGTTTTTTGCCGAGCTTAACGAGGTTTTGACCAGAGAGTTGGCTGAGGATGGATACTCCGGTGTCGAGGTTAGAGTTACTCCTATGCGCACTGAGATCATCATCCGAGCCACCCGCACTCAAAACGTTCTCGGAGAAAAGGGTAGGAGGATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTTTACGCCGAGAAAGTTAACAACAGAGGGCTTTGTGCCATTGCCCAAGCTGAGTCTCTTCGCTACAAGCTACTTGGTGGCCTTGCTGTGCGGAGGGCATGCTATGGTGTCTTGAGATTCGTTATGGAAAGTGGAGCAAAGGGATGCGAGGTGATTGTTAGTGGAAAACTGAGGGCACAGCGTGCAAAGTCTATGAAGTTCAAAGATGGATATATGATATCTTCTGGTCAACCAGTGAGAGATTATATCGACTCGGCTGTTAGACACGTTCTTCTCAGACAGGGAGTTCTGGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCCAAGGGCAAACAAGGCCCTACCACCCCTCTTCCTGATGTTGTGGTAATCCATTCCCCCAAGGAGGAAGAAGAAATCGTGCATAGACCAGCAGCAGCAGCAGCACCACCAGTTTTGAGCGCTGATATTGAGGTTGTTCCAGAAGTAGTAATAGCAGCTTGA

Protein sequence

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVPEVVIAA

Homology

[Close]

BLAST of Carg18637 vs. NCBI nr
Match: XP_023538264.1 (40S ribosomal protein S3-2-like [Cucurbita pepo subsp. pepo] >KAG7021344.1 40S ribosomal protein S3-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 472.2 bits (1214), Expect = 2.7e-129
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240

Query: 241 EVVIAA 247
           EVVIAA
Sbjct: 241 EVVIAA 246

[Close]

BLAST of Carg18637 vs. NCBI nr
Match: XP_022965528.1 (40S ribosomal protein S3-2-like [Cucurbita maxima])

HSP 1 Score: 465.7 bits (1197), Expect = 2.5e-127
Identity = 244/246 (99.19%), Postives = 245/246 (99.59%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRP AAAAPPVLSADIEVVP
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRP-AAAAPPVLSADIEVVP 240

Query: 241 EVVIAA 247
           EVV+AA
Sbjct: 241 EVVVAA 245

[Close]

BLAST of Carg18637 vs. NCBI nr
Match: XP_022938091.1 (40S ribosomal protein S3-2-like [Cucurbita moschata])

HSP 1 Score: 461.8 bits (1187), Expect = 3.6e-126
Identity = 243/246 (98.78%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAA   PVLSADIEVVP
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAA---PVLSADIEVVP 240

Query: 241 EVVIAA 247
           EVVIAA
Sbjct: 241 EVVIAA 243

[Close]

BLAST of Carg18637 vs. NCBI nr
Match: KAG6586486.1 (40S ribosomal protein S3-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 237/238 (99.58%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEV 239
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIE+
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEL 238

[Close]

BLAST of Carg18637 vs. NCBI nr
Match: XP_022946744.1 (40S ribosomal protein S3-2-like [Cucurbita moschata])

HSP 1 Score: 452.2 bits (1162), Expect = 2.8e-123
Identity = 238/246 (96.75%), Postives = 240/246 (97.56%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAA  VL+ DIEV  
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAAAVLTTDIEV-- 240

Query: 241 EVVIAA 247
            VV+AA
Sbjct: 241 PVVVAA 244

[Close]

BLAST of Carg18637 vs. ExPASy Swiss-Prot
Match: Q9M339 (40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 6.2e-113
Identity = 210/235 (89.36%), Postives = 220/235 (93.62%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSAD 236
           VLGIKVK+MLDWDPKG  GP TPLPDVV+IHSPKEEE I + PA  AAP  L AD
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAI-YAPAQVAAPAALVAD 234

[Close]

BLAST of Carg18637 vs. ExPASy Swiss-Prot
Match: Q9SIP7 (40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 1.7e-110
Identity = 205/232 (88.36%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVL 233
           VLGIKVKIMLDWDP GK GP TPLPDVV+IH+PK ++ +   PA AAAP  L
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPK-DDVVYSAPAQAAAPVTL 231

[Close]

BLAST of Carg18637 vs. ExPASy Swiss-Prot
Match: Q9FJA6 (40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 2.9e-110
Identity = 204/246 (82.93%), Postives = 224/246 (91.06%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEE------EIVHRPAAAAAPPVLSA 240
           VLG+KVKIMLDWDPKGKQGP TPLPDVV+IH+PKE++      ++V + A     P+ + 
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVPEAPLTTT 240

[Close]

BLAST of Carg18637 vs. ExPASy Swiss-Prot
Match: P02350 (40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2)

HSP 1 Score: 354.0 bits (907), Expect = 1.4e-96
Identity = 183/216 (84.72%), Postives = 191/216 (88.43%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEE 217
           VLGIKVKIML WDP GK GP  PLPD V I  PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216

[Close]

BLAST of Carg18637 vs. ExPASy Swiss-Prot
Match: P47835 (40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.4e-96
Identity = 183/216 (84.72%), Postives = 191/216 (88.43%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA QMSKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLG
Sbjct: 1   MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEE 217
           VLGIKVKIML WDP GK GP  PLPD V I  PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216

[Close]

BLAST of Carg18637 vs. ExPASy TrEMBL
Match: A0A6J1HP95 (40S ribosomal protein S3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465403 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.2e-127
Identity = 244/246 (99.19%), Postives = 245/246 (99.59%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRP AAAAPPVLSADIEVVP
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRP-AAAAPPVLSADIEVVP 240

Query: 241 EVVIAA 247
           EVV+AA
Sbjct: 241 EVVVAA 245

[Close]

BLAST of Carg18637 vs. ExPASy TrEMBL
Match: A0A6J1FC65 (40S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444280 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.7e-126
Identity = 243/246 (98.78%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAA   PVLSADIEVVP
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAA---PVLSADIEVVP 240

Query: 241 EVVIAA 247
           EVVIAA
Sbjct: 241 EVVIAA 243

[Close]

BLAST of Carg18637 vs. ExPASy TrEMBL
Match: A0A6J1G4R4 (40S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111450719 PE=3 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.4e-123
Identity = 238/246 (96.75%), Postives = 240/246 (97.56%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAA  VL+ DIEV  
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAAAVLTTDIEV-- 240

Query: 241 EVVIAA 247
            VV+AA
Sbjct: 241 PVVVAA 244

[Close]

BLAST of Carg18637 vs. ExPASy TrEMBL
Match: A0A6J1KF90 (40S ribosomal protein S3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493776 PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 9.9e-122
Identity = 236/246 (95.93%), Postives = 239/246 (97.15%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS VQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEVVP 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRP+AAAA  VL+ DIEV  
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPSAAAA--VLTTDIEV-- 240

Query: 241 EVVIAA 247
            VV+AA
Sbjct: 241 PVVVAA 242

[Close]

BLAST of Carg18637 vs. ExPASy TrEMBL
Match: A0A0A0LHQ6 (KH type-2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000230 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.4e-120
Identity = 234/248 (94.35%), Postives = 236/248 (95.16%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSADIEV-- 240
           VLGIKVKIMLDWDPKGKQGPTTPLPDVV IHSPKEEEEIVHRP     P VL+ADIEV  
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP-----PAVLTADIEVPV 240

Query: 241 -VPEVVIA 246
            VP V +A
Sbjct: 241 AVPPVPVA 243

[Close]

BLAST of Carg18637 vs. TAIR 10
Match: AT3G53870.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 408.3 bits (1048), Expect = 4.4e-114
Identity = 210/235 (89.36%), Postives = 220/235 (93.62%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVLSAD 236
           VLGIKVK+MLDWDPKG  GP TPLPDVV+IHSPKEEE I + PA  AAP  L AD
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAI-YAPAQVAAPAALVAD 234

[Close]

BLAST of Carg18637 vs. TAIR 10
Match: AT2G31610.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 400.2 bits (1027), Expect = 1.2e-111
Identity = 205/232 (88.36%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAPPVL 233
           VLGIKVKIMLDWDP GK GP TPLPDVV+IH+PK ++ +   PA AAAP  L
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPK-DDVVYSAPAQAAAPVTL 231

[Close]

BLAST of Carg18637 vs. TAIR 10
Match: AT5G35530.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 399.4 bits (1025), Expect = 2.0e-111
Identity = 204/246 (82.93%), Postives = 224/246 (91.06%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEE------EIVHRPAAAAAPPVLSA 240
           VLG+KVKIMLDWDPKGKQGP TPLPDVV+IH+PKE++      ++V + A     P+ + 
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVPEAPLTTT 240

The following BLAST results are available for this feature:

BLAST of Carg18637 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538264.1	2.7e-129	100.00	40S ribosomal protein S3-2-like [Cucurbita pepo subsp. pepo] >KAG7021344.1 40S r...	[more]
XP_022965528.1	2.5e-127	99.19	40S ribosomal protein S3-2-like [Cucurbita maxima]	[more]
XP_022938091.1	3.6e-126	98.78	40S ribosomal protein S3-2-like [Cucurbita moschata]	[more]
KAG6586486.1	1.4e-125	99.58	40S ribosomal protein S3-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946744.1	2.8e-123	96.75	40S ribosomal protein S3-2-like [Cucurbita moschata]	[more]

BLAST of Carg18637 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M339	6.2e-113	89.36	40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1	[more]
Q9SIP7	1.7e-110	88.36	40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1	[more]
Q9FJA6	2.9e-110	82.93	40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1	[more]
P02350	1.4e-96	84.72	40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2	[more]
P47835	1.4e-96	84.72	40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1	[more]

BLAST of Carg18637 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HP95	1.2e-127	99.19	40S ribosomal protein S3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465403 PE=3...	[more]
A0A6J1FC65	1.7e-126	98.78	40S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444280 PE...	[more]
A0A6J1G4R4	1.4e-123	96.75	40S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111450719 PE...	[more]
A0A6J1KF90	9.9e-122	95.93	40S ribosomal protein S3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493776 PE=3...	[more]
A0A0A0LHQ6	1.4e-120	94.35	KH type-2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000230 P...	[more]

BLAST of Carg18637 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53870.1	4.4e-114	89.36	Ribosomal protein S3 family protein	[more]
AT2G31610.1	1.2e-111	88.36	Ribosomal protein S3 family protein	[more]
AT5G35530.1	2.0e-111	82.93	Ribosomal protein S3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 1..91 e-value: 2.0E-48 score: 164.3
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 106..188 e-value: 2.5E-25 score: 88.8
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 93..219 e-value: 4.5E-66 score: 222.6
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 93..191
IPR005703	Ribosomal protein S3, eukaryotic/archaeal	TIGRFAM	TIGR01008	TIGR01008	coord: 8..210 e-value: 7.2E-71 score: 235.9
IPR004044	K Homology domain, type 2	PFAM	PF07650	KH_2	coord: 20..93 e-value: 1.1E-12 score: 47.5
IPR004044	K Homology domain, type 2	PROSITE	PS50823	KH_TYPE_2	coord: 21..92 score: 11.333969
None	No IPR available	PANTHER	PTHR11760:SF52	40S RIBOSOMAL PROTEIN S3-RELATED	coord: 3..228
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 3..228
None	No IPR available	CDD	cd02413	40S_S3_KH	coord: 15..95 e-value: 7.32966E-51 score: 158.925
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 147..183
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 10..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18637-RA	Carg18637-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome