Carg18631 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18631
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 11898638 .. 11899126 (+)
RNA-Seq ExpressionCarg18631
SyntenyCarg18631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAACGCGGAAGAGGCATGATTTTGTTCCGGCGGAGAACTCGACGCAGAAGAGGCCGCGAGCGGCGGCGGCGGTGGAGGATGTCGGTAACGACATTCTGGCATGGATTTCGGTGGAAGAGGAGACAGTCGGCGAACTCATGATGCTTCTGGACGACGCTGAGAAAAGCCGACCGATGGCGGAGAAAGTGAAGTTCATTGACGATCCGTACTCATCGGCGATGATTTTTCAATCATCGTCGTCGTTCGTTACGATCAATGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCGGAATCGGACTCGTCGGTGATGGCAAGCGTGGACATGAACGGAGCGAGGATCAAACTGATGGAAATCGATTCTGCGACTGTGGAGAAATGGAAGTTATGGAAGTCGGAGGAGGTGTCGTCCATATCGGAGGGATCCAGTTGGGATGAGGATGATTTAGCGAGGTTCATCGGCGATGAGGAACAGATTTTCTGA

mRNA sequence

ATGGAAGAAACGCGGAAGAGGCATGATTTTGTTCCGGCGGAGAACTCGACGCAGAAGAGGCCGCGAGCGGCGGCGGCGGTGGAGGATGTCGGTAACGACATTCTGGCATGGATTTCGGTGGAAGAGGAGACAGTCGGCGAACTCATGATGCTTCTGGACGACGCTGAGAAAAGCCGACCGATGGCGGAGAAAGTGAAGTTCATTGACGATCCGTACTCATCGGCGATGATTTTTCAATCATCGTCGTCGTTCGTTACGATCAATGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCGGAATCGGACTCGTCGGTGATGGCAAGCGTGGACATGAACGGAGCGAGGATCAAACTGATGGAAATCGATTCTGCGACTGTGGAGAAATGGAAGTTATGGAAGTCGGAGGAGGTGTCGTCCATATCGGAGGGATCCAGTTGGGATGAGGATGATTTAGCGAGGTTCATCGGCGATGAGGAACAGATTTTCTGA

Coding sequence (CDS)

ATGGAAGAAACGCGGAAGAGGCATGATTTTGTTCCGGCGGAGAACTCGACGCAGAAGAGGCCGCGAGCGGCGGCGGCGGTGGAGGATGTCGGTAACGACATTCTGGCATGGATTTCGGTGGAAGAGGAGACAGTCGGCGAACTCATGATGCTTCTGGACGACGCTGAGAAAAGCCGACCGATGGCGGAGAAAGTGAAGTTCATTGACGATCCGTACTCATCGGCGATGATTTTTCAATCATCGTCGTCGTTCGTTACGATCAATGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCGGAATCGGACTCGTCGGTGATGGCAAGCGTGGACATGAACGGAGCGAGGATCAAACTGATGGAAATCGATTCTGCGACTGTGGAGAAATGGAAGTTATGGAAGTCGGAGGAGGTGTCGTCCATATCGGAGGGATCCAGTTGGGATGAGGATGATTTAGCGAGGTTCATCGGCGATGAGGAACAGATTTTCTGA

Protein sequence

MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRPMAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLMEIDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF
Homology
BLAST of Carg18631 vs. NCBI nr
Match: KAG6586479.1 (hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021338.1 hypothetical protein SDJN02_18027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 IDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF 163
           IDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF
Sbjct: 121 IDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF 162

BLAST of Carg18631 vs. NCBI nr
Match: XP_023538157.1 (uncharacterized protein LOC111799012 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.8 bits (787), Expect = 5.7e-80
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 IDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF 163
           IDSATVEKWKLWKSEE SS+SEGSSWDEDDLARFIGDEEQIF
Sbjct: 121 IDSATVEKWKLWKSEEASSVSEGSSWDEDDLARFIGDEEQIF 162

BLAST of Carg18631 vs. NCBI nr
Match: XP_022938092.1 (uncharacterized protein LOC111444281 [Cucurbita moschata])

HSP 1 Score: 306.2 bits (783), Expect = 1.7e-79
Identity = 160/162 (98.77%), Postives = 160/162 (98.77%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 IDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF 163
           IDSATVEKWKLWKSEE SSISEGSSWDEDDLARFIGDEE IF
Sbjct: 121 IDSATVEKWKLWKSEEASSISEGSSWDEDDLARFIGDEEHIF 162

BLAST of Carg18631 vs. NCBI nr
Match: XP_022965986.1 (uncharacterized protein LOC111465706 [Cucurbita maxima])

HSP 1 Score: 304.3 bits (778), Expect = 6.3e-79
Identity = 158/162 (97.53%), Postives = 160/162 (98.77%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 IDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF 163
           IDSATVEKWKLWK+EE SS+SEG SWDEDDLARFIGDEEQIF
Sbjct: 121 IDSATVEKWKLWKTEEASSVSEGFSWDEDDLARFIGDEEQIF 162

BLAST of Carg18631 vs. NCBI nr
Match: XP_038890889.1 (uncharacterized protein LOC120080324 [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 9.8e-64
Identity = 135/169 (79.88%), Postives = 147/169 (86.98%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAA-AVEDVGNDILAWISVEEETVGELMMLLDDAEKSR 60
           M+E+RKRH+FVP E ST+KRPR A    EDV +DILAWISVEEETVGELMMLLDD EKSR
Sbjct: 1   MDESRKRHEFVPPEASTEKRPRVAVKEAEDVDDDILAWISVEEETVGELMMLLDDVEKSR 60

Query: 61  PMAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLM 120
           PM EKVKFIDDPYSSA+IFQSSSS+VTINGNEESCGSSFSESDSS+MASVDMNGARIKLM
Sbjct: 61  PMEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKLM 120

Query: 121 EIDSATVEKWKLW------KSEEVSSISEGSSWDEDDLARFIGDEEQIF 163
           EIDS TVEKWKLW      + EE S++ +G  WDEDDLARFIGDEEQIF
Sbjct: 121 EIDSETVEKWKLWSEDRLKEEEETSAVLDGFCWDEDDLARFIGDEEQIF 169

BLAST of Carg18631 vs. ExPASy TrEMBL
Match: A0A6J1FD19 (uncharacterized protein LOC111444281 OS=Cucurbita moschata OX=3662 GN=LOC111444281 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.0e-80
Identity = 160/162 (98.77%), Postives = 160/162 (98.77%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 IDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF 163
           IDSATVEKWKLWKSEE SSISEGSSWDEDDLARFIGDEE IF
Sbjct: 121 IDSATVEKWKLWKSEEASSISEGSSWDEDDLARFIGDEEHIF 162

BLAST of Carg18631 vs. ExPASy TrEMBL
Match: A0A6J1HN50 (uncharacterized protein LOC111465706 OS=Cucurbita maxima OX=3661 GN=LOC111465706 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.1e-79
Identity = 158/162 (97.53%), Postives = 160/162 (98.77%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 IDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF 163
           IDSATVEKWKLWK+EE SS+SEG SWDEDDLARFIGDEEQIF
Sbjct: 121 IDSATVEKWKLWKTEEASSVSEGFSWDEDDLARFIGDEEQIF 162

BLAST of Carg18631 vs. ExPASy TrEMBL
Match: A0A5A7UZZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00520 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 127/171 (74.27%), Postives = 144/171 (84.21%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEE+R  H+FV  E ST+KR R AA  ED+ +DILAWIS+EEETVGELMMLLDD EKSRP
Sbjct: 1   MEESRNTHEFVRTEASTEKRQRPAA--EDMDDDILAWISLEEETVGELMMLLDDEEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           + EKVKFI+DPYSSA+IFQSSSS+VTINGNEESCGSSFSESDSS+MASVDMNGARIK+ME
Sbjct: 61  VEEKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVME 120

Query: 121 IDSATVEKWKLW---------KSEEVSSISEG-SSWDEDDLARFIGDEEQI 162
           IDS TVEKWK+W         + EEVS + +G  SWDEDDLARF+GDEEQI
Sbjct: 121 IDSETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQI 169

BLAST of Carg18631 vs. ExPASy TrEMBL
Match: A0A5D3CG58 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00940 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 127/171 (74.27%), Postives = 144/171 (84.21%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEE+R  H+FV  E ST+KR R AA  ED+ +DILAWIS+EEETVGELMMLLDD EKSRP
Sbjct: 1   MEESRNTHEFVRTEASTEKRQRPAA--EDMDDDILAWISLEEETVGELMMLLDDEEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           + EKVKFI+DPYSSA+IFQSSSS+VTINGNEESCGSSFSESDSS+MASVDMNGARIK+ME
Sbjct: 61  VEEKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVME 120

Query: 121 IDSATVEKWKLW---------KSEEVSSISEG-SSWDEDDLARFIGDEEQI 162
           IDS TVEKWK+W         + EEVS + +G  SWDEDDLARF+GDEEQI
Sbjct: 121 IDSETVEKWKMWSENGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQI 169

BLAST of Carg18631 vs. ExPASy TrEMBL
Match: A0A1S3CB71 (uncharacterized protein LOC103498512 OS=Cucumis melo OX=3656 GN=LOC103498512 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 127/171 (74.27%), Postives = 144/171 (84.21%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEE+R  H+FV  E ST+KR R AA  ED+ +DILAWIS+EEETVGELMMLLDD EKSRP
Sbjct: 1   MEESRNTHEFVRTEASTEKRQRPAA--EDMDDDILAWISLEEETVGELMMLLDDEEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           + EKVKFI+DPYSSA+IFQSSSS+VTINGNEESCGSSFSESDSS+MASVDMNGARIK+ME
Sbjct: 61  VEEKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVME 120

Query: 121 IDSATVEKWKLW---------KSEEVSSISEG-SSWDEDDLARFIGDEEQI 162
           IDS TVEKWK+W         + EEVS + +G  SWDEDDLARF+GDEEQI
Sbjct: 121 IDSETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQI 169

BLAST of Carg18631 vs. TAIR 10
Match: AT5G56880.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 62/170 (36.47%), Postives = 89/170 (52.35%), Query Frame = 0

Query: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
           MEE R + D    +N+T K       +   G         +E T  E+M L++ +  +  
Sbjct: 1   MEEMRNKVD-ENGKNTTAKEVTKKTTMLVAG-------EYDEYTPDEIMSLVESSSPTMT 60

Query: 61  MAE------------KVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMAS 120
             E            +V+FIDDPY+  ++ QSSS ++TIN NEESCG SFS+SDSSVMAS
Sbjct: 61  TTEIEGTNFSGEGSFRVRFIDDPYAMPVVVQSSSGYITINVNEESCGPSFSDSDSSVMAS 120

Query: 121 VDMNGARIKLMEIDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDE 159
           VD +G      E  +   EK   W + EV   +    W++D LARF+G++
Sbjct: 121 VDASGLFGCCFEYGN---EKGGAWSTNEVR--ASEYEWNDDMLARFLGED 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586479.11.5e-80100.00hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023538157.15.7e-8098.77uncharacterized protein LOC111799012 [Cucurbita pepo subsp. pepo][more]
XP_022938092.11.7e-7998.77uncharacterized protein LOC111444281 [Cucurbita moschata][more]
XP_022965986.16.3e-7997.53uncharacterized protein LOC111465706 [Cucurbita maxima][more]
XP_038890889.19.8e-6479.88uncharacterized protein LOC120080324 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FD198.0e-8098.77uncharacterized protein LOC111444281 OS=Cucurbita moschata OX=3662 GN=LOC1114442... [more]
A0A6J1HN503.1e-7997.53uncharacterized protein LOC111465706 OS=Cucurbita maxima OX=3661 GN=LOC111465706... [more]
A0A5A7UZZ91.1e-5774.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CG581.1e-5774.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CB711.1e-5774.27uncharacterized protein LOC103498512 OS=Cucumis melo OX=3656 GN=LOC103498512 PE=... [more]
Match NameE-valueIdentityDescription
AT5G56880.12.4e-1536.47unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR37265OS01G0195300 PROTEINcoord: 1..159
NoneNo IPR availablePANTHERPTHR37265:SF5BNACNNG68970D PROTEINcoord: 1..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18631-RACarg18631-RAmRNA