Carg18571 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18571
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	lysine-rich arabinogalactan protein 18-like
Location	Carg_Chr07: 3019274 .. 3020840 (+)
RNA-Seq Expression	Carg18571
Synteny	Carg18571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCTCCTGCTGCAGCTCCGCAGCGAAGTATCCATCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCTAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCCCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTTCCCCCGCCCCTTCACTGGACGACAAGGTAATTAAATTTTCACCCAAATCTCTGCATTTACCGCCTACACATTTACCCGCATTGTTAATCTGCTCAAGATCTGCAACATCCCTAAAAAAAAATCCGCCATTATCAATATCCACAGCCAAGATCTCTCTATAATTTGGATAAAAATGGCACATCTTAGCGCTCTTAGGGCTGTGTCAATGGCCGCATTTGCTGCACTCGATAACTGAGTGACTAAGCCTAACGCAACGCGCCACCGACACGCGTGGATCTAGCGCGTAAGAAGCCTTGAGTTGAGACAATTACCTTAGTTGAGTACAAGATTAACCCAAGATTAAAGAAACACGGCAAGAAAAGGAATCAAAATGTCAGAATGTCAGATCACACAGCACTCGAGAGCATTAAATGTCCGTCCAGTTCTTTATCAGATCAAACACGTTTAAAAAATAAGTTGTCTGCAGCTTTTGAACATGCAGTTTCTATAATCTTTAAATTAATATGATTAAATAATAGTTTAATATTTATAACGCCCTGGATCTGTTTTTTTGTTGCAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTGGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAGAGAGAGTTTGTGATCGTGCTTCATTTATTATATTTAATCCTTTTTTTTGTTTAAATTTCCGCCACCGTACTCTATCAGAAGAGGTGCTTTATATTCATTCTTCATTGAATTGATTGATGAAATTTGATTTACGAAATTGATGAGCTCTGGGGCGTTTGATTTGATGATGATGATGAACATTTTGGATGGAGATGGGATTTGGAGTGGGGAAATCTTTTATTATTACATTTTGATTGGATGGATCCATTTGTGTTCTGTAATTAATTCTCTTTCATTTCTTCTTCCCATCATTTACTGTTAATTTATTATAACAAATTAAATTATGTGGAAATCAAGTAATTATAAACTTTAATCATTATAAAGCAGTAGGCCACCGACAGGATGAGTGAAGTGATAGA

mRNA sequence

ATGGCCATCTCCTGCTGCAGCTCCGCAGCGAAGTATCCATCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCTAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCCCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTTCCCCCGCCCCTTCACTGGACGACAAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTGGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAGAGAGAGTTTGTGATCGTGCTTCATTTATTATATTTAATCCTTTTTTTTGTTTAAATTTCCGCCACCGTACTCTATCAGAAGAGGTGCTTTATATTCATTCTTCATTGAATTGATTGATGAAATTTGATTTACGAAATTGATGAGCTCTGGGGCGTTTGATTTGATGATGATGATGAACATTTTGGATGGAGATGGGATTTGGAGTGGGGAAATCTTTTATTATTACATTTTGATTGGATGGATCCATTTGTGTTCTGTAATTAATTCTCTTTCATTTCTTCTTCCCATCATTTACTGTTAATTTATTATAACAAATTAAATTATGTGGAAATCAAGTAATTATAAACTTTAATCATTATAAAGCAGTAGGCCACCGACAGGATGAGTGAAGTGATAGA

Coding sequence (CDS)

ATGGCCATCTCCTGCTGCAGCTCCGCAGCGAAGTATCCATCTCCAGCAGCATCTCCTGTTGTGCCACCGACAAATTCATCTCCCGCTGCCGCTCCCCAAAAGCCGGTCACTCCAGCACCGGTATCTACGCCACCAGCAGTCGCTCCAGTGGCCTCTCCGCCGGCTAGTACTCCTCCAACTGCTTCCGTTCCGGCTAGCTCCCCACCAGCTGCTTCCGTTCCGGCTAGCTCCCCGCCAGCTACCGTTCCAGCGAGCTCTCCGCCGGTTCCAGTTCCGGCCAGTTCTCCACCGGTTCCAGTTCCGGAGAGCTCTCCTCCCGTACCAACTCCGATCGAATCTCCTCCCGCTCCCGAAACTGCTCCTCCTGCTCCGGTCGCATCACCTCCCGCTGAGGTCCCGTCGCCGGCGCCTAGTAAGAAGAAATCGAAGAAGCACAAAGCACCAGCTCCTTCTCCGGCGTTGCTTGGTCCACCTGCTCCACCCTCTGAAGCCCCAGGAGGAAGTGAGGAAGGTCCTTCCCCCGCCCCTTCACTGGACGACAAGAGTGGAGCTGAAGCGTTGAGGAGGAACATGCAGAAGGTGGTCGGAAGCCTGGCTCTGGGATTTTCCGCCGCCGTCTTCAGCTTCATGTTCTAG

Protein sequence

MAISCCSSAAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF

Homology

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BLAST of Carg18571 vs. NCBI nr
Match: KAG7026957.1 (Lysine-rich arabinogalactan protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.4 bits (877), Expect = 2.7e-90
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MAISCCSSAAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPT 60
           MAISCCSSAAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPT
Sbjct: 1   MAISCCSSAAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPT 60

Query: 61  ASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETA 120
           ASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETA
Sbjct: 61  ASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETA 120

Query: 121 PPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDD 180
           PPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDD
Sbjct: 121 PPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDD 180

Query: 181 KSGAEALRRNMQKVVGSLALGFSAAVFSFMF 212
           KSGAEALRRNMQKVVGSLALGFSAAVFSFMF
Sbjct: 181 KSGAEALRRNMQKVVGSLALGFSAAVFSFMF 211

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BLAST of Carg18571 vs. NCBI nr
Match: KAG6595001.1 (hypothetical protein SDJN03_11554, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.8 bits (839), Expect = 6.9e-86
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 68
           AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP
Sbjct: 39  AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 98

Query: 69  PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP 128
           PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP
Sbjct: 99  PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP 158

Query: 129 PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALR 188
           PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALR
Sbjct: 159 PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALR 218

Query: 189 RNMQKVVGSLALGFSAAVFSFMF 212
           RNMQKVVGSLALGFSAAVFSFMF
Sbjct: 219 RNMQKVVGSLALGFSAAVFSFMF 241

[Close]

BLAST of Carg18571 vs. NCBI nr
Match: XP_023517454.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 1.7e-84
Identity = 200/203 (98.52%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 68
           AAKYP PAASPVVPPTNSSPAAAPQKPVTPAPVSTPP VAPVASPPASTPPTASVPASSP
Sbjct: 39  AAKYPPPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPVVAPVASPPASTPPTASVPASSP 98

Query: 69  PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP 128
           PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP
Sbjct: 99  PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP 158

Query: 129 PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALR 188
           PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALR
Sbjct: 159 PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALR 218

Query: 189 RNMQKVVGSLALGFSAAVFSFMF 212
           +NMQKVVGSLALGFSAAVFSFMF
Sbjct: 219 KNMQKVVGSLALGFSAAVFSFMF 241

[Close]

BLAST of Carg18571 vs. NCBI nr
Match: XP_022963306.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 321.2 bits (822), Expect = 6.5e-84
Identity = 200/203 (98.52%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 68
           AAK P PAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP
Sbjct: 39  AAKNPPPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 98

Query: 69  PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP 128
           PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP
Sbjct: 99  PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP 158

Query: 129 PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALR 188
           PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGP+PAPSLDDKSGAEALR
Sbjct: 159 PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPTPAPSLDDKSGAEALR 218

Query: 189 RNMQKVVGSLALGFSAAVFSFMF 212
           RNMQKVVGSLALGFSAAVFSFMF
Sbjct: 219 RNMQKVVGSLALGFSAAVFSFMF 241

[Close]

BLAST of Carg18571 vs. NCBI nr
Match: XP_023003133.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 316.2 bits (809), Expect = 2.1e-82
Identity = 201/213 (94.37%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPT-------- 68
           AAKYP PAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPT        
Sbjct: 39  AAKYPPPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 98

Query: 69  --ASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPE 128
             ASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPE
Sbjct: 99  PAASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPE 158

Query: 129 TAPPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSL 188
           +APPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSL
Sbjct: 159 SAPPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSL 218

Query: 189 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 212
           DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF
Sbjct: 219 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 251

[Close]

BLAST of Carg18571 vs. ExPASy Swiss-Prot
Match: Q9FPR2 (Lysine-rich arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=AGP18 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-18
Identity = 99/204 (48.53%), Postives = 121/204 (59.31%), Query Frame = 0


Query: 14  SPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP--PAA 73
           SP +SP   PT  S   AP    T +P  T P  AP  +P AS    AS P  SP  PA 
Sbjct: 23  SPISSPTKSPTTPS---APTTSPTKSPAVTSPTTAPAKTPTAS----ASSPVESPKSPAP 82

Query: 74  SVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAE 133
              +S PP  VP SSPPVP P  S PV    SSPPVP P+        +PPAPVA+P A+
Sbjct: 83  VSESSPPPTPVPESSPPVPAPMVSSPV----SSPPVPAPVAD------SPPAPVAAPVAD 142

Query: 134 VPSPAPSK-----KKSKKHK-APAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAE 193
           VP+PAPSK     KKSKKH+ APAP+P LLGPPAPP+E+PG + +  SP PS DD+SGA 
Sbjct: 143 VPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESPGPNSDAFSPGPSADDQSGAA 202

Query: 194 ALRRNMQKVVGSLALGFSAAVFSF 210
           + R      VG++A  ++  V +F
Sbjct: 203 STRVLRNVAVGAVATAWAVLVMAF 209

[Close]

BLAST of Carg18571 vs. ExPASy Swiss-Prot
Match: Q9C5S0 (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 86/191 (45.03%), Postives = 108/191 (56.54%), Query Frame = 0


Query: 15  PAASPVVP-PTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASV 74
           P A+P  P PT   PAA P     P PV+T P     A PPA+ PP    P SSPP AS 
Sbjct: 27  PTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPP----PVSSPPPASP 86

Query: 75  PASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVP 134
           P ++PP   P +SPP PV  +SPP   P + PPV TP          PPAP+ASPPA+VP
Sbjct: 87  PPATPP---PVASPPPPV--ASPP---PATPPPVATP----------PPAPLASPPAQVP 146

Query: 135 SPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPS---LDDKSGAEALRRN 194
           +PAP+ K      +P+PSP+   PP P S+APG S +  SPAPS   ++D++GA      
Sbjct: 147 APAPTTKPD----SPSPSPS-SSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGA------ 183

Query: 195 MQKVVGSLALG 202
             K+V SL  G
Sbjct: 207 -SKMVSSLVFG 183

[Close]

BLAST of Carg18571 vs. ExPASy Swiss-Prot
Match: Q9S740 (Lysine-rich arabinogalactan protein 19 OS=Arabidopsis thaliana OX=3702 GN=AGP19 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 3.1e-04
Identity = 89/217 (41.01%), Postives = 108/217 (49.77%), Query Frame = 0


Query: 15  PAASPVVPPTNSSP--AAAPQKPVTPAPVSTPPAVAPVASPPAS--TPPTASVPASSPPA 74
           PAASPV   T + P   AAP     P P +T P V+  A PPAS  TPP A  P +SPPA
Sbjct: 27  PAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVS-AAQPPASPVTPPPAVTP-TSPPA 86

Query: 75  ASV------------PASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPE 134
             V            P  SPPA+ P  SPP   P  +P  P P  + P P P   PPAP 
Sbjct: 87  PKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTSPPPTPASPPPAPASPPPAPA 146

Query: 135 TAPPAPVASPPAEVPS---------PAPSKKKSK-KHK----APAPSPALLGPPAPPSEA 194
           + PPAPV+ PP + PS         PAP+K K K KHK    APAP+P    PP+PPS  
Sbjct: 147 SPPPAPVSPPPVQAPSPISLPPAPAPAPTKHKRKHKHKRHHHAPAPAPI---PPSPPSPP 206

Query: 195 PGGSEEGPSPAPSLDDKSGAEALRRNMQKVVGSLALG 202
                +  +PAPS  + +G  AL +   + V  L  G
Sbjct: 207 VLTDPQDTAPAPS-PNTNGGNALNQLKGRAVMWLNTG 237

[Close]

BLAST of Carg18571 vs. ExPASy TrEMBL
Match: A0A6J1HFT1 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111463555 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.1e-84
Identity = 200/203 (98.52%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 68
           AAK P PAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP
Sbjct: 39  AAKNPPPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 98

Query: 69  PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP 128
           PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP
Sbjct: 99  PAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASP 158

Query: 129 PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALR 188
           PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGP+PAPSLDDKSGAEALR
Sbjct: 159 PAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPTPAPSLDDKSGAEALR 218

Query: 189 RNMQKVVGSLALGFSAAVFSFMF 212
           RNMQKVVGSLALGFSAAVFSFMF
Sbjct: 219 RNMQKVVGSLALGFSAAVFSFMF 241

[Close]

BLAST of Carg18571 vs. ExPASy TrEMBL
Match: A0A6J1KVL2 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111496835 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.0e-82
Identity = 201/213 (94.37%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPT-------- 68
           AAKYP PAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPT        
Sbjct: 39  AAKYPPPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP 98

Query: 69  --ASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPE 128
             ASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPE
Sbjct: 99  PAASVPASSPPAASVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPE 158

Query: 129 TAPPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSL 188
           +APPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSL
Sbjct: 159 SAPPAPVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSL 218

Query: 189 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 212
           DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF
Sbjct: 219 DDKSGAEALRRNMQKVVGSLALGFSAAVFSFMF 251

[Close]

BLAST of Carg18571 vs. ExPASy TrEMBL
Match: A0A1S3B0X7 (lysine-rich arabinogalactan protein 18-like OS=Cucumis melo OX=3656 GN=LOC103484821 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.5e-65
Identity = 175/209 (83.73%), Postives = 184/209 (88.04%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVST-----PPAVAPVASPPASTPPTASV 68
           AAKYP PAASPV PPTNSSPAAAPQKP TPAPVST     PPAVAPVASPPASTPPTASV
Sbjct: 39  AAKYPPPAASPVSPPTNSSPAAAPQKPATPAPVSTPPASAPPAVAPVASPPASTPPTASV 98

Query: 69  PASSPPAASVPASSPP-ATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPP 128
           PASSPPAASVP SSPP ATVPASSPPVPVP SSPPVPVP SSPPVPTP ESPPAPE++PP
Sbjct: 99  PASSPPAASVPPSSPPAATVPASSPPVPVPVSSPPVPVPVSSPPVPTPTESPPAPESSPP 158

Query: 129 APVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKS 188
           APVASPPAEVP+PAPS KKSKKH+APAPSPALLGPPAPPSEAP GSEEGPSP+PSL+DKS
Sbjct: 159 APVASPPAEVPAPAPS-KKSKKHRAPAPSPALLGPPAPPSEAPAGSEEGPSPSPSLEDKS 218

Query: 189 GAEALRRNMQKVVGSLALGFSAAVFSFMF 212
           GAEAL     KV GSLALG++A   S +F
Sbjct: 219 GAEAL----MKVAGSLALGWAAVAVSIIF 242

[Close]

BLAST of Carg18571 vs. ExPASy TrEMBL
Match: Q9XIV1 (Arabinogalactan protein OS=Cucumis sativus OX=3659 GN=Csa_6G493850 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.2e-62
Identity = 170/209 (81.34%), Postives = 180/209 (86.12%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVST-----PPAVAPVASPPASTPPTASV 68
           AA YP PAASPV  PTN SPAAAPQKP TPAPVST     PPAVAPVASPPASTPPTASV
Sbjct: 39  AATYPPPAASPVSTPTNPSPAAAPQKPATPAPVSTPPASAPPAVAPVASPPASTPPTASV 98

Query: 69  PASSPPAASVPASSPP-ATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPP 128
           PASSPPAASVP SSPP ATVPASSPPVPVP SSPPV VP SSPPVPTP ESPPAPE++PP
Sbjct: 99  PASSPPAASVPPSSPPAATVPASSPPVPVPVSSPPVSVPVSSPPVPTPTESPPAPESSPP 158

Query: 129 APVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKS 188
           APVASPP EVP+PAPSKKKSKKH+APAPSPALLGPPAPPSEAP GSEEGP+P+PSL+DKS
Sbjct: 159 APVASPPVEVPAPAPSKKKSKKHRAPAPSPALLGPPAPPSEAPAGSEEGPAPSPSLEDKS 218

Query: 189 GAEALRRNMQKVVGSLALGFSAAVFSFMF 212
           GAEAL     KV GSLALG++A   S +F
Sbjct: 219 GAEAL----MKVAGSLALGWAAVAVSIIF 243

[Close]

BLAST of Carg18571 vs. ExPASy TrEMBL
Match: A0A5D3CP79 (Lysine-rich arabinogalactan protein 18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004360 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 6.6e-58
Identity = 158/179 (88.27%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 9   AAKYPSPAASPVVPPTNSSPAAAPQKPVTPAPVST-----PPAVAPVASPPASTPPTASV 68
           AAKYP PAASPV PPTNSSPAAAPQKP TPAPVST     PPAVAPVASPPASTPPTASV
Sbjct: 39  AAKYPPPAASPVSPPTNSSPAAAPQKPATPAPVSTPPASAPPAVAPVASPPASTPPTASV 98

Query: 69  PASSPPAASVPASSPP-ATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPP 128
           PASSPPAASVP SSPP ATVPASSPPVPVP SSPPVPVP SSPPVPTP ESPPAPE++PP
Sbjct: 99  PASSPPAASVPPSSPPAATVPASSPPVPVPVSSPPVPVPVSSPPVPTPTESPPAPESSPP 158

Query: 129 APVASPPAEVPSPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDK 182
           APVASPPAEVP+PAPS KKSKKH+APAPSPALLGPPAPPSEAP GSEEGPSP+PSL+DK
Sbjct: 159 APVASPPAEVPAPAPS-KKSKKHRAPAPSPALLGPPAPPSEAPAGSEEGPSPSPSLEDK 216

[Close]

BLAST of Carg18571 vs. TAIR 10
Match: AT4G37450.1 (arabinogalactan protein 18 )

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-19
Identity = 99/204 (48.53%), Postives = 121/204 (59.31%), Query Frame = 0


Query: 14  SPAASPVVPPTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSP--PAA 73
           SP +SP   PT  S   AP    T +P  T P  AP  +P AS    AS P  SP  PA 
Sbjct: 23  SPISSPTKSPTTPS---APTTSPTKSPAVTSPTTAPAKTPTAS----ASSPVESPKSPAP 82

Query: 74  SVPASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAE 133
              +S PP  VP SSPPVP P  S PV    SSPPVP P+        +PPAPVA+P A+
Sbjct: 83  VSESSPPPTPVPESSPPVPAPMVSSPV----SSPPVPAPVAD------SPPAPVAAPVAD 142

Query: 134 VPSPAPSK-----KKSKKHK-APAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAE 193
           VP+PAPSK     KKSKKH+ APAP+P LLGPPAPP+E+PG + +  SP PS DD+SGA 
Sbjct: 143 VPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESPGPNSDAFSPGPSADDQSGAA 202

Query: 194 ALRRNMQKVVGSLALGFSAAVFSF 210
           + R      VG++A  ++  V +F
Sbjct: 203 STRVLRNVAVGAVATAWAVLVMAF 209

[Close]

BLAST of Carg18571 vs. TAIR 10
Match: AT2G14890.1 (arabinogalactan protein 9 )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 86/191 (45.03%), Postives = 108/191 (56.54%), Query Frame = 0


Query: 15  PAASPVVP-PTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASV 74
           P A+P  P PT   PAA P     P PV+T P     A PPA+ PP    P SSPP AS 
Sbjct: 27  PTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPP----PVSSPPPASP 86

Query: 75  PASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVP 134
           P ++PP   P +SPP PV  +SPP   P + PPV TP          PPAP+ASPPA+VP
Sbjct: 87  PPATPP---PVASPPPPV--ASPP---PATPPPVATP----------PPAPLASPPAQVP 146

Query: 135 SPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPS---LDDKSGAEALRRN 194
           +PAP+ K      +P+PSP+   PP P S+APG S +  SPAPS   ++D++GA      
Sbjct: 147 APAPTTKPD----SPSPSPS-SSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGA------ 183

Query: 195 MQKVVGSLALG 202
             K+V SL  G
Sbjct: 207 -SKMVSSLVFG 183

[Close]

BLAST of Carg18571 vs. TAIR 10
Match: AT2G14890.2 (arabinogalactan protein 9 )

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-09
Identity = 79/167 (47.31%), Postives = 96/167 (57.49%), Query Frame = 0


Query: 15  PAASPVVP-PTNSSPAAAPQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASV 74
           P A+P  P PT   PAA P     P PV+T P     A PPA+ PP    P SSPP AS 
Sbjct: 27  PTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPP----PVSSPPPASP 86

Query: 75  PASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVP 134
           P ++PP   P +SPP PV  +SPP   P + PPV TP          PPAP+ASPPA+VP
Sbjct: 87  PPATPP---PVASPPPPV--ASPP---PATPPPVATP----------PPAPLASPPAQVP 146

Query: 135 SPAPSKKKSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDD 181
           +PAP+ K      +P+PSP+   PP P S+APG S +  SPAPS  D
Sbjct: 147 APAPTTKPD----SPSPSPS-SSPPLPSSDAPGPSTDSISPAPSPTD 166

[Close]

BLAST of Carg18571 vs. TAIR 10
Match: AT1G68725.1 (arabinogalactan protein 19 )

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05
Identity = 89/217 (41.01%), Postives = 108/217 (49.77%), Query Frame = 0


Query: 15  PAASPVVPPTNSSP--AAAPQKPVTPAPVSTPPAVAPVASPPAS--TPPTASVPASSPPA 74
           PAASPV   T + P   AAP     P P +T P V+  A PPAS  TPP A  P +SPPA
Sbjct: 27  PAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVS-AAQPPASPVTPPPAVTP-TSPPA 86

Query: 75  ASV------------PASSPPATVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPE 134
             V            P  SPPA+ P  SPP   P  +P  P P  + P P P   PPAP 
Sbjct: 87  PKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTSPPPTPASPPPAPASPPPAPA 146

Query: 135 TAPPAPVASPPAEVPS---------PAPSKKKSK-KHK----APAPSPALLGPPAPPSEA 194
           + PPAPV+ PP + PS         PAP+K K K KHK    APAP+P    PP+PPS  
Sbjct: 147 SPPPAPVSPPPVQAPSPISLPPAPAPAPTKHKRKHKHKRHHHAPAPAPI---PPSPPSPP 206

Query: 195 PGGSEEGPSPAPSLDDKSGAEALRRNMQKVVGSLALG 202
                +  +PAPS  + +G  AL +   + V  L  G
Sbjct: 207 VLTDPQDTAPAPS-PNTNGGNALNQLKGRAVMWLNTG 237

The following BLAST results are available for this feature:

BLAST of Carg18571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026957.1	2.7e-90	100.00	Lysine-rich arabinogalactan protein 18, partial [Cucurbita argyrosperma subsp. a...	[more]
KAG6595001.1	6.9e-86	100.00	hypothetical protein SDJN03_11554, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517454.1	1.7e-84	98.52	lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963306.1	6.5e-84	98.52	lysine-rich arabinogalactan protein 18-like [Cucurbita moschata]	[more]
XP_023003133.1	2.1e-82	94.37	lysine-rich arabinogalactan protein 18-like [Cucurbita maxima]	[more]

BLAST of Carg18571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPR2	2.9e-18	48.53	Lysine-rich arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=AGP18 ...	[more]
Q9C5S0	1.6e-08	45.03	Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1...	[more]
Q9S740	3.1e-04	41.01	Lysine-rich arabinogalactan protein 19 OS=Arabidopsis thaliana OX=3702 GN=AGP19 ...	[more]

BLAST of Carg18571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFT1	3.1e-84	98.52	lysine-rich arabinogalactan protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KVL2	1.0e-82	94.37	lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3B0X7	9.5e-65	83.73	lysine-rich arabinogalactan protein 18-like OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
Q9XIV1	1.2e-62	81.34	Arabinogalactan protein OS=Cucumis sativus OX=3659 GN=Csa_6G493850 PE=2 SV=1	[more]
A0A5D3CP79	6.6e-58	88.27	Lysine-rich arabinogalactan protein 18-like OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Carg18571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37450.1	2.1e-19	48.53	arabinogalactan protein 18	[more]
AT2G14890.1	1.1e-09	45.03	arabinogalactan protein 9	[more]
AT2G14890.2	7.3e-09	47.31	arabinogalactan protein 9	[more]
AT1G68725.1	2.2e-05	41.01	arabinogalactan protein 19	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 38..54 score: 44.71 coord: 85..110 score: 33.08 coord: 8..29 score: 26.36 coord: 66..83 score: 34.44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..167
None	No IPR available	PANTHER	PTHR37209:SF3	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 12..207
IPR044981	Lysine-rich arabinogalactan protein AGP9/17/18	PANTHER	PTHR37209	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 12..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18571-RA	Carg18571-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane