Carg18542 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18542
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cyclin-D1-1-like
Location	Carg_Chr07: 2871564 .. 2872675 (+)
RNA-Seq Expression	Carg18542
Synteny	Carg18542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACTGCCAGGCGGCCGAGGCGGCGACGGTGGTCATTCAACACCCTGGGATTAATCCCAAGATAGAGAGGATTTATTGGTCCGTAAGTGCACACCAGATCATGAACTCCAACCCTGGCCATTACGTTGCGCTGGTTGTTACCTCGTCCACTTTGAAGACCCAAAATGGTACCCCGATCAAGCAGCTCAAACTCCTCCGCCCCGATGACACGCTTCTTATCGGCCATGTCTATCGTCTCATCACCTTCGAGGGTAATTCTTCATATTTCTCAAATATTTATTTTAAAAAAAAAACTATAGTTTAGTTGGGTTTGTTCTTGTTTCTTTTGGTTCAGATGTATTGAAGGAATTTGCTGCAAAGAAATGCGTGAAACTGGGGAAATTGCTTAAAGAGGGAGGAGCACTCTCGAAAAAGGACACAGATTCTGCTTCAAATCCAAATTCAAATTCTAAATCCCAAAATTACATGAAGGTAATCGAATACCCATGAACCTTAATCATGCTCCAAATCCCCAAAAGTTGATTTATATAATTTCTTTTTCATGATTACACTCTGATTAAAACCAAAAATCAAAAGAAAAAAACAAAACAAAACAAAAAGCTGTTTTTCTGTATAAACAAGTATCTGAAAATGGTTTGAAATTTAAGGCCACGGATATCAAGGGAAATGCCTTTTATGGGCCACTTCATGAACCTTGTCAGAAATTTAAGTAACCTGTAGAGCGGTAGAGTTCAGAGGTATTCAATTATATATCATCAAGTCAAACGTATATAGTTTGGTAATGGGGTTTTGCCTGTATTTTAAATATATTTATTGGCTCGCTTTCGCTGTCTCCTTTGGTCCATATCAATATCTTCAGGAAAACGTGAACATTATTCCCACTTCTTCGTCTCATTGGGGTCAAATCCAAACGTGACGCTGAAATAATTATTTTGAATATATGGTCAGGCGGAGCCGGAGGGGGGCCGTCGCCTGGAAAACAGAGTCGCCGGCAGCAGCAGTGGTGGAAGAGGCGGAGGAGGACACAGAGGCATGGGTAGGCATTACGGTGGTGGGGGTCAATGGCGGCCAGCCTTACAGAGCATTGCAGAAGTTGGAATTAATTGA

mRNA sequence

ATGGGGAACTGCCAGGCGGCCGAGGCGGCGACGGTGGTCATTCAACACCCTGGGATTAATCCCAAGATAGAGAGGATTTATTGGTCCGTAAGTGCACACCAGATCATGAACTCCAACCCTGGCCATTACGTTGCGCTGGTTGTTACCTCGTCCACTTTGAAGACCCAAAATGGTACCCCGATCAAGCAGCTCAAACTCCTCCGCCCCGATGACACGCTTCTTATCGGCCATGTCTATCGTCTCATCACCTTCGAGGATGTATTGAAGGAATTTGCTGCAAAGAAATGCGTGAAACTGGGGAAATTGCTTAAAGAGGGAGGAGCACTCTCGAAAAAGGACACAGATTCTGCTTCAAATCCAAATTCAAATTCTAAATCCCAAAATTACATGAAGGCGGAGCCGGAGGGGGGCCGTCGCCTGGAAAACAGAGTCGCCGGCAGCAGCAGTGGTGGAAGAGGCGGAGGAGGACACAGAGGCATGGGTAGGCATTACGGTGGTGGGGGTCAATGGCGGCCAGCCTTACAGAGCATTGCAGAAGTTGGAATTAATTGA

Coding sequence (CDS)

ATGGGGAACTGCCAGGCGGCCGAGGCGGCGACGGTGGTCATTCAACACCCTGGGATTAATCCCAAGATAGAGAGGATTTATTGGTCCGTAAGTGCACACCAGATCATGAACTCCAACCCTGGCCATTACGTTGCGCTGGTTGTTACCTCGTCCACTTTGAAGACCCAAAATGGTACCCCGATCAAGCAGCTCAAACTCCTCCGCCCCGATGACACGCTTCTTATCGGCCATGTCTATCGTCTCATCACCTTCGAGGATGTATTGAAGGAATTTGCTGCAAAGAAATGCGTGAAACTGGGGAAATTGCTTAAAGAGGGAGGAGCACTCTCGAAAAAGGACACAGATTCTGCTTCAAATCCAAATTCAAATTCTAAATCCCAAAATTACATGAAGGCGGAGCCGGAGGGGGGCCGTCGCCTGGAAAACAGAGTCGCCGGCAGCAGCAGTGGTGGAAGAGGCGGAGGAGGACACAGAGGCATGGGTAGGCATTACGGTGGTGGGGGTCAATGGCGGCCAGCCTTACAGAGCATTGCAGAAGTTGGAATTAATTGA

Protein sequence

MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTPIKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEVGIN

Homology

[Close]

BLAST of Carg18542 vs. NCBI nr
Match: KAG7026929.1 (hypothetical protein SDJN02_10936, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.5 bits (916), Expect = 7.1e-95
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP 120

Query: 121 NSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV 180
           NSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV
Sbjct: 121 NSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV 180

Query: 181 GIN 184
           GIN
Sbjct: 181 GIN 183

[Close]

BLAST of Carg18542 vs. NCBI nr
Match: KAG6594969.1 (hypothetical protein SDJN03_11522, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.7 bits (901), Expect = 3.9e-93
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP 120

Query: 121 NSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV 180
           NSNSKSQNYMKAE EGGRRLENR AGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV
Sbjct: 121 NSNSKSQNYMKAEQEGGRRLENRDAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV 180

Query: 181 GIN 184
           GIN
Sbjct: 181 GIN 183

[Close]

BLAST of Carg18542 vs. NCBI nr
Match: XP_023518679.1 (uncharacterized protein LOC111782115 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.5 bits (898), Expect = 8.7e-93
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMN+NPGHYVALVVTSSTLKTQNGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNTNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP 120

Query: 121 NSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV 180
           NSNSKSQNYMKAE EGGRRLENR AGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV
Sbjct: 121 NSNSKSQNYMKAEQEGGRRLENRDAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAEV 180

Query: 181 GIN 184
           GIN
Sbjct: 181 GIN 183

[Close]

BLAST of Carg18542 vs. NCBI nr
Match: XP_023003398.1 (uncharacterized protein LOC111497021 [Cucurbita maxima])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 179/187 (95.72%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPGINP+IERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPRIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS----KKDTDS 120
           IK LKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS    KKDTDS
Sbjct: 61  IKHLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKKKDTDS 120

Query: 121 ASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180
           ASNPNSNSKSQNYMKAE EGGRRLENR AGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEVGIN 184
           IAEVGIN
Sbjct: 181 IAEVGIN 187

[Close]

BLAST of Carg18542 vs. NCBI nr
Match: XP_022963138.1 (uncharacterized protein LOC111463436 [Cucurbita moschata])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 176/187 (94.12%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS----KKDTDS 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS      DT+S
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKINDTNS 120

Query: 121 ASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180
           ASNPNSNSKSQNYMKAE EGGRRLENR AGS SGGRGGGG RGMGRHYGGGGQWRPALQS
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSRSGGRGGGGPRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEVGIN 184
           IAEVGIN
Sbjct: 181 IAEVGIN 187

[Close]

BLAST of Carg18542 vs. ExPASy TrEMBL
Match: A0A6J1KWE0 (uncharacterized protein LOC111497021 OS=Cucurbita maxima OX=3661 GN=LOC111497021 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.7e-91
Identity = 179/187 (95.72%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPGINP+IERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPRIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS----KKDTDS 120
           IK LKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS    KKDTDS
Sbjct: 61  IKHLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKKKDTDS 120

Query: 121 ASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180
           ASNPNSNSKSQNYMKAE EGGRRLENR AGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEVGIN 184
           IAEVGIN
Sbjct: 181 IAEVGIN 187

[Close]

BLAST of Carg18542 vs. ExPASy TrEMBL
Match: A0A6J1HGV9 (uncharacterized protein LOC111463436 OS=Cucurbita moschata OX=3662 GN=LOC111463436 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.9e-88
Identity = 176/187 (94.12%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP
Sbjct: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS----KKDTDS 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS      DT+S
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSIGMKINDTNS 120

Query: 121 ASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180
           ASNPNSNSKSQNYMKAE EGGRRLENR AGS SGGRGGGG RGMGRHYGGGGQWRPALQS
Sbjct: 121 ASNPNSNSKSQNYMKAEQEGGRRLENRDAGSRSGGRGGGGPRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEVGIN 184
           IAEVGIN
Sbjct: 181 IAEVGIN 187

[Close]

BLAST of Carg18542 vs. ExPASy TrEMBL
Match: A0A0A0KLJ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495750 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.0e-75
Identity = 155/187 (82.89%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPG N KIERIYWSVSAH+IMNSNPGHYVAL++TSST+K++NGTP
Sbjct: 1   MGNCQAAEAATVVIQHPG-NQKIERIYWSVSAHEIMNSNPGHYVALLITSSTMKSENGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSK----KDTDS 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS     K +DS
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDS 120

Query: 121 ASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180
            SNPN+NSKSQNYMK E +   RLEN  AGSS GGR   G RGMGRHYGGG QWRPALQS
Sbjct: 121 GSNPNANSKSQNYMKPEQDAEHRLENSNAGSSGGGR---GQRGMGRHYGGGSQWRPALQS 180

Query: 181 IAEVGIN 184
           IAE+GIN
Sbjct: 181 IAEIGIN 183

[Close]

BLAST of Carg18542 vs. ExPASy TrEMBL
Match: A0A1S4DTC0 (uncharacterized protein LOC103484864 OS=Cucumis melo OX=3656 GN=LOC103484864 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.9e-75
Identity = 157/189 (83.07%), Postives = 167/189 (88.36%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATVVIQHPG N KIERIYWSVSAH+IMNSNPGHYVAL++TSSTLK++NGTP
Sbjct: 1   MGNCQAAEAATVVIQHPG-NQKIERIYWSVSAHEIMNSNPGHYVALLITSSTLKSENGTP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSK----KDTDS 120
           IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS     K +DS
Sbjct: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKIKGSDS 120

Query: 121 ASNPNSNSKSQNYMKAEPE--GGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPAL 180
            SNPN+NSKSQNYMK++PE     RLEN  AGSS GGR   G RGMGRHYGGG QWRPAL
Sbjct: 121 GSNPNANSKSQNYMKSQPEQNAEHRLENSDAGSSGGGR---GQRGMGRHYGGGSQWRPAL 180

Query: 181 QSIAEVGIN 184
           QSIAE+GIN
Sbjct: 181 QSIAEIGIN 185

[Close]

BLAST of Carg18542 vs. ExPASy TrEMBL
Match: A0A6J1BSJ8 (uncharacterized protein LOC111005379 OS=Momordica charantia OX=3673 GN=LOC111005379 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.2e-69
Identity = 149/187 (79.68%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATV+I HPG N KI+RIYWSVSAH+IMN+NPGHYVALVVTSSTLK+  G P
Sbjct: 1   MGNCQAAEAATVLIHHPG-NNKIQRIYWSVSAHEIMNANPGHYVALVVTSSTLKSDTGAP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALS----KKDTDS 120
           +K LKLLRPDDTLLIGH+YRLITFEDVLKEFAAKKCVKLGKLLKEGGALS     KD+DS
Sbjct: 61  LKHLKLLRPDDTLLIGHLYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSVGMKVKDSDS 120

Query: 121 ASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQS 180
           A NPNS   S++  K E E GRR E+  AGSS G R GGGHRGMGRHYGGGGQWRPALQS
Sbjct: 121 APNPNS---SEDCTKPEQEAGRRPESSDAGSSGGVR-GGGHRGMGRHYGGGGQWRPALQS 180

Query: 181 IAEVGIN 184
           IAEVGIN
Sbjct: 181 IAEVGIN 182

[Close]

BLAST of Carg18542 vs. TAIR 10
Match: AT5G67620.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 183.0 bits (463), Expect = 2.2e-46
Identity = 109/184 (59.24%), Postives = 126/184 (68.48%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAATV+I HP  N K+ERIYWSV+A  IM SNPGHYVA+VVTS T+K + G P
Sbjct: 1   MGNCQAAEAATVLIHHPAEN-KVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLP 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGA--LSKKDTDSAS 120
           +KQLKLLRPDDTLLIGHVYRL++FE+VL EFA KKCVKLGKLLKEGG   L+KK T    
Sbjct: 61  LKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKLLKEGGGLDLTKKKTKHRK 120

Query: 121 NPNSNSKSQNYMKAEPEGGR-RLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSI 180
                   +    ++P   +   +N VAG + G        G GR   GGG WRPAL SI
Sbjct: 121 KKLDQETGKVNPNSDPNPNQDGADNAVAGENGGDGFMRRSHGGGR---GGGGWRPALHSI 180

Query: 181 AEVG 182
            E G
Sbjct: 181 PEFG 180

[Close]

BLAST of Carg18542 vs. TAIR 10
Match: AT5G50090.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-22
Identity = 69/186 (37.10%), Postives = 103/186 (55.38%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQ---N 60
           MGNCQA + A VVIQHP  N K E++   VSA  +M  NPGH V+L+++++ L +    +
Sbjct: 1   MGNCQAVDTARVVIQHP--NGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGH 60

Query: 61  GTPIK--QLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTD 120
           G P++  ++KLLRP DTL++GHVYRLIT ++V+K   AKKC KL           KK++ 
Sbjct: 61  GGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKL-----------KKESK 120

Query: 121 SASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQ 180
            + +     K+ N  K + E   +  +R++ S                      W+P+LQ
Sbjct: 121 GSDDKLEMVKAINSTKLDNEDQEKERSRISRS----------------------WQPSLQ 151

Query: 181 SIAEVG 182
           SI+E G
Sbjct: 181 SISEGG 151

[Close]

BLAST of Carg18542 vs. TAIR 10
Match: AT5G50090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-20
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQ---N 60
           MGNCQA + A VVIQHP  N K E++   VSA  +M  NPGH V+L+++++ L +    +
Sbjct: 1   MGNCQAVDTARVVIQHP--NGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGH 60

Query: 61  GTPIK--QLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTD 120
           G P++  ++KLLRP DTL++GHVYRLIT ++V+K   AKKC KL K  K  G+  K +  
Sbjct: 61  GGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESK--GSDDKLEMV 120

Query: 121 SASNPNS-NSKSQNYMKAEPEGGRRL 141
            A N    +++ Q  MK + +   R+
Sbjct: 121 KAINSTKLDNEDQLQMKKQEKERSRI 142

[Close]

BLAST of Carg18542 vs. TAIR 10
Match: AT5G62900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 8.0e-20
Identity = 70/179 (39.11%), Postives = 101/179 (56.42%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALVVTSSTLKTQNGTP 60
           MGNCQAAEAAT VIQ P  + K  R Y +V+A +++ S+PGH+VAL++ SS +       
Sbjct: 1   MGNCQAAEAATTVIQQP--DGKSVRFYCTVNASEVIKSHPGHHVALLL-SSAVPHGGSLR 60

Query: 61  IKQLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGALSKKDTDSASNP 120
           + ++KLLRP D LL+GHVYRLI+ E+V+K   AKK    GK+ K  G  S  + +   NP
Sbjct: 61  VTRIKLLRPSDNLLLGHVYRLISSEEVMKGIRAKKS---GKMKKIHGEFSVAEEE--INP 120

Query: 121 NSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGGQWRPALQSIAE 180
            +       +++E    +  + R+     G    GG     R       W+P+LQSI+E
Sbjct: 121 LT-------LRSESASDKDTQRRIHEKQRGMMNTGGATNKVR------AWQPSLQSISE 158

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BLAST of Carg18542 vs. TAIR 10
Match: AT1G60010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 68/191 (35.60%), Postives = 98/191 (51.31%), Query Frame = 0


Query: 1   MGNCQAAEAATVVIQHPGINPKIERIYWSVSAHQIMNSNPGHYVALV-------VTSSTL 60
           MGNCQA +AA +V+QHP  + KI+R Y  VS  +IM   PGHYV+L+       + ++T 
Sbjct: 1   MGNCQAVDAAALVLQHP--DGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTT 60

Query: 61  KTQNGTPIK-----QLKLLRPDDTLLIGHVYRLITFEDVLKEFAAKKCVKLGKLLKEGGA 120
            T + +  K     ++KLLRP + L++GH YRLIT ++V+K   AKK  K  K   E   
Sbjct: 61  TTDDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKKHQSETSK 120

Query: 121 LSKKDTDSASNPNSNSKSQNYMKAEPEGGRRLENRVAGSSSGGRGGGGHRGMGRHYGGGG 180
             KK +        + K+QN ++ + E  R +    A S S                   
Sbjct: 121 EKKKPSSEKKIDEESDKNQN-LETKDEKQRSVLTNSASSRS------------------K 170

The following BLAST results are available for this feature:

BLAST of Carg18542 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026929.1	7.1e-95	100.00	hypothetical protein SDJN02_10936, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594969.1	3.9e-93	98.91	hypothetical protein SDJN03_11522, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023518679.1	8.7e-93	98.36	uncharacterized protein LOC111782115 [Cucurbita pepo subsp. pepo]	[more]
XP_023003398.1	1.8e-90	95.72	uncharacterized protein LOC111497021 [Cucurbita maxima]	[more]
XP_022963138.1	1.4e-87	94.12	uncharacterized protein LOC111463436 [Cucurbita moschata]	[more]

BLAST of Carg18542 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KWE0	8.7e-91	95.72	uncharacterized protein LOC111497021 OS=Cucurbita maxima OX=3661 GN=LOC111497021...	[more]
A0A6J1HGV9	6.9e-88	94.12	uncharacterized protein LOC111463436 OS=Cucurbita moschata OX=3662 GN=LOC1114634...	[more]
A0A0A0KLJ3	3.0e-75	82.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495750 PE=4 SV=1	[more]
A0A1S4DTC0	3.9e-75	83.07	uncharacterized protein LOC103484864 OS=Cucumis melo OX=3656 GN=LOC103484864 PE=...	[more]
A0A6J1BSJ8	4.2e-69	79.68	uncharacterized protein LOC111005379 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Carg18542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67620.1	2.2e-46	59.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G50090.2	2.9e-22	37.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G50090.1	2.1e-20	43.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G62900.1	8.0e-20	39.11	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT1G60010.1	1.0e-19	35.60	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..179 e-value: 1.8E-31 score: 110.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..170
None	No IPR available	PANTHER	PTHR33413	EXPRESSED PROTEIN	coord: 1..180
None	No IPR available	PANTHER	PTHR33413:SF1	EXPRESSED PROTEIN	coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18542-RA	Carg18542-RA	mRNA