Carg18453 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18453
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 936488 .. 937274 (-)
RNA-Seq ExpressionCarg18453
SyntenyCarg18453
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGGTAGAATCCATACCAGAACCAAGATATATAAAGGATGAAAACTTACTGGATAAAGCTAGTAATTTGAGGAACTTGAATTTCAAGATTTCTTTCAGCGAGGTAATGCTTTTACTCTTTCAATATCTTTGCTGTTACATACTTTCAAGAAATCTGTCAGTTGATATTAAGGTGATTAGATCATGATAGATGTAGAAAACCAGGTGAGACTTGAGTGTTGAATCGGCTGTATGGAGGCAAGCCAATCTAGGTTAGATCAACACTCCAAGGAGAGAACTTTTTCAATTAAGCTAAGATATTGATGTTACGTTGCCATTTTTAGTGCCTAAACTAGATGGAGACCATAGGAGAAGTTGCAATATCGCACAGTGATGGAACATTTACAACTTCTAATGATTTCAGGCTTCAACTCTAGGATGGATGAATAACTTATTGAAGATTTATGTGAAGGGACTAGCACGAGCTTTTTTTGCTGCGCTGGTTGCATGTTCTAGCTTTTATAACTGAAATGCTTCCCTTTCTTTGTTCGTCAGCTGAGTACATAGAGTCTTCTTTCCATTGGTCTTTTCTATTTTCTTTTTCTCAGTTGAGATTTGCCTTCCTGTTATTTCATACCTCTACATTCTCAAGTTTTCATTCCATTCCATCAGGTGCTGATGTTGACTGCTAATAAATTTGTTTGGTCTTTTTCCTGCATTTTTTTTTTCAGAGCATATGGTTGGCTAATCACGGTAAGGGGTCGATAAAGGTTTATTCAACGAGGTAAACATAATATTACTCG

mRNA sequence

ATGTTCTTGGTAGAATCCATACCAGAACCAAGATATATAAAGGATGAAAACTTACTGGATAAAGCTAGTAATTTGAGGAACTTGAATTTCAAGATTTCTTTCAGCGAGGCTTCAACTCTAGGATGGATGAATAACTTATTGAAGATTTATGTGAAGGGACTAGCACGAGCTTTTTTTGCTGCGCTGGTTGCATGTTCTAGCTTTTATAACTGAAATGCTTCCCTTTCTTTGTTCGTCAGCTGAGTACATAGAGTCTTCTTTCCATTGGTCTTTTCTATTTTCTTTTTCTCAGTTGAGATTTGCCTTCCTGTTATTTCATACCTCTACATTCTCAAGTTTTCATTCCATTCCATCAGGTGCTGATGTTGACTGCTAATAAATTTGTTTGGTCTTTTTCCTGCATTTTTTTTTTCAGAGCATATGGTTGGCTAATCACGGTAAGGGGTCGATAAAGGTTTATTCAACGAGGTAAACATAATATTACTCG

Coding sequence (CDS)

ATGTTCTTGGTAGAATCCATACCAGAACCAAGATATATAAAGGATGAAAACTTACTGGATAAAGCTAGTAATTTGAGGAACTTGAATTTCAAGATTTCTTTCAGCGAGGCTTCAACTCTAGGATGGATGAATAACTTATTGAAGATTTATGTGAAGGGACTAGCACGAGCTTTTTTTGCTGCGCTGGTTGCATGTTCTAGCTTTTATAACTGA

Protein sequence

MFLVESIPEPRYIKDENLLDKASNLRNLNFKISFSEASTLGWMNNLLKIYVKGLARAFFAALVACSSFYN
Homology
[Close]
BLAST of Carg18453 vs. NCBI nr
Match: KAG7010373.1 (hypothetical protein SDJN02_27166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.6 bits (353), Expect = 5.2e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MFLVESIPEPRYIKDENLLDKASNLRNLNFKISFSEASTLGWMNNLLKIYVKGLARAFFA 60
          MFLVESIPEPRYIKDENLLDKASNLRNLNFKISFSEASTLGWMNNLLKIYVKGLARAFFA
Sbjct: 1  MFLVESIPEPRYIKDENLLDKASNLRNLNFKISFSEASTLGWMNNLLKIYVKGLARAFFA 60

Query: 61 ALVACSSFYN 71
          ALVACSSFYN
Sbjct: 61 ALVACSSFYN 70

[Close]
BLAST of Carg18453 vs. NCBI nr
Match: KAG6570511.1 (hypothetical protein SDJN03_29426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 1  MFLVESIPEPRYIKDENLLDKASNLRNLNFKISFSE 37
          MFLVE IPEPRYIKDENLLDKASNLRNLNFKISFSE
Sbjct: 1  MFLVEPIPEPRYIKDENLLDKASNLRNLNFKISFSE 36

The following BLAST results are available for this feature:
BLAST of Carg18453 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010373.15.2e-30100.00hypothetical protein SDJN02_27166, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570511.11.7e-0997.22hypothetical protein SDJN03_29426, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg18453 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18453 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18453 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18453-RACarg18453-RAmRNA