Carg18353 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18353
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	GATA type zinc finger transcription factor family protein
Location	Carg_Chr04: 895730 .. 897855 (+)
RNA-Seq Expression	Carg18353
Synteny	Carg18353

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTATAAACAAATTTGACGCTGTGAATAATCAATATATCATAAATTATTTGTTTCTGCCTTTCGCTACATCTTGCATTTCACTATCTTCTTCTTCTCCGCTCCACTTGCTACATCCTAAAAACAATCGATTCATTTCCTTACTTCCTTGATTTGAGGTACCCATCTTCGATTTCGATTGCATTTCATCTCTGACCTAGATCTTGCTTGTTCATGATTCTGGGTTTGATCGTTTTCTTCGGTACATTTTGAAGTGTGTTGAGCTCTTGGATTTGGTTTTCCGAGATTCTCAGATCATTGGATGCAACTTCTTTTATGTATTACTTTTTTTTTCCGTCTGAATTTGATTCTGGGTTTTTTGTGTATTCAACGTGTTTGATGAAATGCCATTAGGAAAAGGAAGTTTGTTTGGTCGGAATCGCTTTGTGGGTTTGAATTGGACGAGATTCTGATTGGTTGACGATAGTCGGATCCACTTCAAGGCTTAGCTATGTCGTTTATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACCGTGTACCCTGTAGATCAGTTATCGGCTGATGGAGTTGCTTTCCACAAGCTATGTTTCAAATGTAGCCATTGCAAAGGGACTCTTAAGGTACATCACTTAATTTTCAGGACTCATTTATTGAAATCTTTAATTTTCTTGCCTCACTTCAGCATGATTATGCATGTTTACCGAGCATTTTTGTGGGTCAGAATGTGGGAACTTTTCTGAAATGACTTGTCAAATGCTTTCAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTATACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAACTGGAAATTTCAGCAAGAACTTTCTATCTCGTATGTTCCAAACTTACATTTGATCATGTAGCTAGTGCTTTTTACCAACATTTTCTAAATTTTTCTTTTTCTACAGCTGCAAAGTCCGCCGACAAGCCAACCCCAGAACTGGTAAATTTAACCCCAATGCTGCAACTAGTTGTGATTATATTTATAAACAGCCGCTCATCTCATAGCCTCTTGTTGGCTCCAGACTAGGTCACCAAGCAAAGCTGCCGGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCTCTGGAGAAGGTTAGTTTAGAAGACGTTAGAAAGATATTCAAACAGTTAAAACCTGCTTAATCGCATCAATTGTTCATTGTCTAATGATGCAATGAATTATCTTTTCTGCTGGGGTTTGACTTTCTTGTGTATGCTATCGTTTCCGACATTTACATATCGACCTCTAAAATAAATGAACTGAGAGATCCCACATCGGTTGTAAAAGGGAACAAAGCATTCCTTGTAAGAGTGTGAAAACTCCTCCTTATCAGACACATTTTAAAACCTTGTGGGAAGCATAGAAGAGAAAGTCCAAAGAGGATAATATCTACTAGCCATGAGCTTGGGCTGTTACAAATGGTATCAGAGCCAATCACGGGGCGGTGTGCCAGCAAGGATGCTGGCCCCCCAAGGGAGGTGGATTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTATGGAAATCTCTCCCTATCAAACGCATTTTAAAACCTTGAGTGGAAGCCAAAAAGAGGAAGTCTAAAGAGGACAATGTCTGCTATATTACCGAGCGGTGGGCTTAAACTATTAAAACTATTACAGAGCGAATGTTACTTCAATGAATTGGTTTTCTGAAGGCTTGAATGTGGCTCTTGTTTGAGGAACTTTAGATTGCTTAATCTAAAAGAAAGGGGAGTAGTTTTGCTGGGTTGGTACTTTGAATGCATCTGCACGGACGTTCCTTTATTGGTGACGGATTGCGGGAATTGCTTGTATGCAGGTGACAGTTGAGAGCCAAGCGTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTCATGGAATTTTGTACTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAACGTCAAGCAGTGATCTCCGATCCCGACGCTTCAAAGGTCGAGTTATAA

mRNA sequence

CCCTATAAACAAATTTGACGCTGTGAATAATCAATATATCATAAATTATTTGTTTCTGCCTTTCGCTACATCTTGCATTTCACTATCTTCTTCTTCTCCGCTCCACTTGCTACATCCTAAAAACAATCGATTCATTTCCTTACTTCCTTGATTTGAGGTACCCATCTTCGATTTCGATTGCATTTCATCTCTGACCTAGATCTTGCTTGTTCATGATTCTGGGTTTGATCGTTTTCTTCGGTACATTTTGAAGTGTGTTGAGCTCTTGGATTTGGTTTTCCGAGATTCTCAGATCATTGGATGCAACTTCTTTTATGTATTACTTTTTTTTTCCGTCTGAATTTGATTCTGGGTTTTTTGTGTATTCAACGTGTTTGATGAAATGCCATTAGGAAAAGGAAGTTTGTTTGGTCGGAATCGCTTTGTGGGTTTGAATTGGACGAGATTCTGATTGGTTGACGATAGTCGGATCCACTTCAAGGCTTAGCTATGTCGTTTATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACCGTGTACCCTGTAGATCAGTTATCGGCTGATGGAGTTGCTTTCCACAAGCTATGTTTCAAATGTAGCCATTGCAAAGGGACTCTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTATACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAACTGGAAATTTCAGCAAGAACTTTCTATCTCCTGCAAAGTCCGCCGACAAGCCAACCCCAGAACTGACTAGGTCACCAAGCAAAGCTGCCGGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCTCTGGAGAAGGTGACAGTTGAGAGCCAAGCGTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTCATGGAATTTTGTACTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAACGTCAAGCAGTGATCTCCGATCCCGACGCTTCAAAGGTCGAGTTATAA

Coding sequence (CDS)

ATGTCGTTTATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACCGTGTACCCTGTAGATCAGTTATCGGCTGATGGAGTTGCTTTCCACAAGCTATGTTTCAAATGTAGCCATTGCAAAGGGACTCTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTATACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAACTGGAAATTTCAGCAAGAACTTTCTATCTCCTGCAAAGTCCGCCGACAAGCCAACCCCAGAACTGACTAGGTCACCAAGCAAAGCTGCCGGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCTCTGGAGAAGGTGACAGTTGAGAGCCAAGCGTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTCATGGAATTTTGTACTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAACGTCAAGCAGTGATCTCCGATCCCGACGCTTCAAAGGTCGAGTTATAA

Protein sequence

MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMKRQAVISDPDASKVEL

Homology

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BLAST of Carg18353 vs. NCBI nr
Match: KAG7030687.1 (LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 408.7 bits (1049), Expect = 2.9e-110
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQAVISDPDASKVEL
Sbjct: 181 RQAVISDPDASKVEL 195

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BLAST of Carg18353 vs. NCBI nr
Match: KAG6600017.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407.1 bits (1045), Expect = 8.3e-110
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASIK 180

Query: 181 RQAVISDPDASKVEL 196
           RQAVISDPDASKVEL
Sbjct: 181 RQAVISDPDASKVEL 195

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BLAST of Carg18353 vs. NCBI nr
Match: XP_023549082.1 (LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549090.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549098.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549105.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549115.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402.1 bits (1032), Expect = 2.7e-108
Identity = 192/195 (98.46%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQA ISDPD SKVEL
Sbjct: 181 RQAAISDPDTSKVEL 195

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BLAST of Carg18353 vs. NCBI nr
Match: XP_022996549.1 (LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996558.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996568.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996576.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996583.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 4.3e-106
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKSADKPTPEL RSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELNRSPSKAARMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQA  SDP+ASKVEL
Sbjct: 181 RQAATSDPNASKVEL 195

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BLAST of Carg18353 vs. NCBI nr
Match: XP_022156896.1 (LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156897.1 LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156898.1 LIM domain-containing protein WLIM2b-like [Momordica charantia])

HSP 1 Score: 388.7 bits (997), Expect = 3.1e-104
Identity = 186/195 (95.38%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHK CFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS DKPTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQA  S PDA  VEL
Sbjct: 181 RQAATSVPDAENVEL 195

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BLAST of Carg18353 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.3e-89
Identity = 152/183 (83.06%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HK CFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF SPAKSADK TPELTR+PS+ AG FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

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BLAST of Carg18353 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.4e-88
Identity = 151/194 (77.84%), Postives = 170/194 (87.63%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPV+ LSADG+++HK CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKS-ADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLE 120
           HFEQLFKE+G+FSKNF SPAK   DKPTPEL R+PS+ AGMFSGTQ+KCATC KT YP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRQAVISDPDASKV 194
           KR    +   A+ V
Sbjct: 181 KRATAAATAAAAAV 194

[Close]

BLAST of Carg18353 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.5e-69
Identity = 118/186 (63.44%), Postives = 151/186 (81.18%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY +D L+ +G  +HK CF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GN+SKNF   A   +KP   LTR+PSK +  FSGTQ+KCATC KT YPLEK
Sbjct: 61  HFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RQAVIS 187
           R++  S
Sbjct: 181 RRSASS 184

[Close]

BLAST of Carg18353 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.4e-69
Identity = 119/177 (67.23%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ +D L+ADGV +HK CFKCSHCKG L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETG+FSK F    +S DK   EL R+PSK    FSGTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSA 178
           +T+E ++YHKSCFKCSHGGC L+ S+YAAL+G+LYCK HF QLF EKGSYNH+ K +
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKS 174

[Close]

BLAST of Carg18353 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-67
Identity = 112/183 (61.20%), Postives = 148/183 (80.87%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY VD LS +G+ +HK CF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GNFSKNF  P K+     PELTR+PSK + +F GTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKESGNFSKNF-QPGKT---EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC+L+ S+YA+L  +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 179

Query: 181 RQA 184
           R A
Sbjct: 181 RTA 179

[Close]

BLAST of Carg18353 vs. ExPASy TrEMBL
Match: A0A6J1KBB9 (LIM domain-containing protein WLIM2a-like OS=Cucurbita maxima OX=3661 GN=LOC111491761 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.1e-106
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKSADKPTPEL RSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELNRSPSKAARMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQA  SDP+ASKVEL
Sbjct: 181 RQAATSDPNASKVEL 195

[Close]

BLAST of Carg18353 vs. ExPASy TrEMBL
Match: A0A6J1DT64 (LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC111023731 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 186/195 (95.38%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHK CFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS DKPTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQA  S PDA  VEL
Sbjct: 181 RQAATSVPDAENVEL 195

[Close]

BLAST of Carg18353 vs. ExPASy TrEMBL
Match: A0A0A0KQF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.3e-104
Identity = 183/194 (94.33%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHK CFKCSHCKGTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS++KPTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVE 195
           RQA  SDPD SKVE
Sbjct: 181 RQAATSDPDPSKVE 194

[Close]

BLAST of Carg18353 vs. ExPASy TrEMBL
Match: A0A1S3CIM8 (LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103501413 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 6.2e-103
Identity = 181/194 (93.30%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHK CFKCSHCKGTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS++KPTPELTRSPS+AA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSRAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVE 195
           RQA  SD D SKVE
Sbjct: 181 RQAATSDSDPSKVE 194

[Close]

BLAST of Carg18353 vs. ExPASy TrEMBL
Match: A0A6J1GYT7 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111458736 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.4e-102
Identity = 182/195 (93.33%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHK CFKCSHC GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE GNFSKNFLS AKS++KPTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQ   SDPD SKVEL
Sbjct: 181 RQVATSDPDTSKVEL 195

[Close]

BLAST of Carg18353 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 330.5 bits (846), Expect = 9.2e-91
Identity = 152/183 (83.06%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HK CFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF SPAKSADK TPELTR+PS+ AG FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

[Close]

BLAST of Carg18353 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 330.5 bits (846), Expect = 9.2e-91
Identity = 152/183 (83.06%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HK CFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF SPAKSADK TPELTR+PS+ AG FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

[Close]

BLAST of Carg18353 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 330.5 bits (846), Expect = 9.2e-91
Identity = 152/183 (83.06%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HK CFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF SPAKSADK TPELTR+PS+ AG FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

[Close]

BLAST of Carg18353 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 330.5 bits (846), Expect = 9.2e-91
Identity = 152/183 (83.06%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HK CFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF SPAKSADK TPELTR+PS+ AG FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

[Close]

BLAST of Carg18353 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 330.5 bits (846), Expect = 9.2e-91
Identity = 152/183 (83.06%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HK CFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF SPAKSADK TPELTR+PS+ AG FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

The following BLAST results are available for this feature:

BLAST of Carg18353 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030687.1	2.9e-110	100.00	LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6600017.1	8.3e-110	99.49	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023549082.1	2.7e-108	98.46	LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_02354...	[more]
XP_022996549.1	4.3e-106	96.92	LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996558.1 LIM...	[more]
XP_022156896.1	3.1e-104	95.38	LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156897.1 ...	[more]

BLAST of Carg18353 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	1.3e-89	83.06	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	1.4e-88	77.84	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	1.5e-69	63.44	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q7F9R9	7.4e-69	67.23	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q1ECF5	3.1e-67	61.20	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of Carg18353 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBB9	2.1e-106	96.92	LIM domain-containing protein WLIM2a-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1DT64	1.5e-104	95.38	LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A0A0KQF5	4.3e-104	94.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1	[more]
A0A1S3CIM8	6.2e-103	93.30	LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10350141...	[more]
A0A6J1GYT7	1.4e-102	93.33	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]

BLAST of Carg18353 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	9.2e-91	83.06	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	9.2e-91	83.06	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	9.2e-91	83.06	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	9.2e-91	83.06	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	9.2e-91	83.06	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 107..159 e-value: 4.2E-11 score: 52.9 coord: 9..61 e-value: 4.1E-11 score: 52.9
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..65 e-value: 6.5E-11 score: 42.3 coord: 108..163 e-value: 1.9E-9 score: 37.6
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.206699
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.2761
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 3.0E-20 score: 74.2 coord: 102..172 e-value: 6.0E-19 score: 70.0
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..184
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..184
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 5.77326E-41 score: 131.433
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18353-RA	Carg18353-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding