Carg18234 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18234
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 18201278 .. 18203469 (+)
RNA-Seq Expression	Carg18234
Synteny	Carg18234

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCAGATTAAAAAGGAAAAAGAAAAAGGGGAAACCTCCACGCAAGTCCCCAGCACACCTCACCGGACAATCGAGAGCGCTTCTCTGGCCTCGATCCTCCGTTCTCCGTTCTCCTTCTCCGCCTTCTTCTTCTTCTCACTTCACAATTCACATTTCATTAGGGTTTCAATTTCACTCCTCTCCCATCGTCGGCGACGCCTTTAATTCCCGGAATCGCTCACCCATTCAGGTACGTTTCCTTCCAATTCCCTGTCCCCCTTCTTTTTCCCGATCCTAATCCTCTATTTCTCCCTGTCTTTTCCTTTTCCTTTTTTTTTTTTCTTTTTTTCTTTTTTGTGGAGGCTGGATCATTTTTGTCATTTCCTCGGATGCCTGTTACGTGTTGGCTTCTCACATTATTCATCGCACTGTGTGGTATTCCACGTTTCCTCTCTGTTTTAGGGTTTTTTTAAATCGTTTGTTTGTTTCCTCTTTATCATTTCCTCCACGATTCTGTATATGTTTGCTACTCATCAGTTCTCAAGATGTCCAATCAAAATAGTTCAATTGGGAATTATAATCCCGTATTTGCCCTCAATTTTAAATGTGGTTTCCCTCTGTAGTTCCCAAAGTTGTGTTTCTTCCTTTTTAACTCCCAAAATGTTGATGTCTGGCATTTTGTTCATACCGATTGCTTTGTGCGTATATAGATTTTAGAAACTTTTTACCTACTAACAACAATTCCAAGTGTAACATTGATTTCTCGGACGCTGCAGTTATTTTTCTGTCGATTGACTTTTCCTTCTATTCTGCCTAGTATTTGAATTTTCTGGCATGAAAATTTATGGATGCCCACTTACAAGTGGGTGGAGTACGTACACCAATGTAATGTGGATTTCAATGTTCTCAATCTAATTATTAGAAGATCGGACGGCTGATTAACCTTTCTCACTGTATTAAATAACTTTTAGAGGCTATAGGGCATGGGAATGACTATACGACATCAGAATCTAATATTATATTTGCATTAGTAGCTGTTTCAAATTTGCTACCAATATAGGCTTTAATGATTGTTGTATCTTGTTTCTTTCTTCTTCACGCTTTCAGAGAAATTATATTGTATAGTATGTACATGTATATATGATATGCGAGATGACTTGTACCATGCCTGGCTATTTTTTTCATGTAGGGTATAGTATAGTTTTTCAATTATAATTGTGATAATAGAATATTCTTTGTTATTCAGAAAGTATTTAGGCCTTTTGTGTTTATTTACCCATTTACATACAGTTTTATTAGTTCTTTCTTCCTCAGTTGAGTAAGTTTCACTCTATTATCCCTTTATTGGGATGAAGTTGAAGGACTTGGACTGTAAAACTTGCCATCATTATTGCAAGTACGATAGAATTTTAATATTTGAAAGATGATATGATATTTCTCTCATATGTCAGATTTCTTTTGCCCGCTTTCCTCAAATATCTATGGAAGTTGCTATCATTTAAAGCTATTCTTGTAATACCATTCAATTCTCTTTAAAGAAGATTCACACCTTGAAATCTATGGATCTTTTTGGGGTATTGAGTTATTTTACTTAAATGTATTTGGAGTTTTTTTTTTTCCTTTTATGGTGTATTGAAGATATAGACCTTGATTACTACACAATGATATGAGTGTGTTAAAAAAAATAATGATAACAAGCCTTTGAACTTAATAATAATATGACATGACATACAAGTGGTTGAACATTTTTTTAAAAAAATTCTAAATTTTGTTATTGAACAAACAGTTTGGTAGCTTGTGGTTGTAATCCATGAGGCACTCAAGACTATAGAAGATGTATGTTTTAGTTGGTTCAGTTCCGTTATAGAAAATTTTCTTTTGAACTTGTCAAGGGGTTGAACATCTATTATTGGGGTATGTATGTAGTGTGTGACGATGTCCTCTTCTTGTGGTTTTGATCAACTTGCTTCATTATGTAAGTGTCTATTTGTTTTATTTTTATTCCTGTTCCTGCTGTAATGTCATTGTCTATTTATGGAGAGAATTATATTATGTATTGTCTATTTTATTTTTGTTTTTCTTCCATTTGGTATTATTTATTTTTACGTGATTAGGACCTACAGCTGACTTAGGCATGAAACTTGAATCTTAATATCTGGGTTTCCCCATCTTGATGTTAGTTGTAATAAAATTCGGGTGCAGGCTTGA

mRNA sequence

ATGAATTTCAGATTAAAAAGGAAAAAGAAAAAGGGGAAACCTCCACGCAAGTCCCCAGCACACCTCACCGGACAATCGAGAGCGCTTCTCTGGCCTCGATCCTCCGTTCTCCGTTCTCCTTCTCCGCCTTCTTCTTCTTCTCACTTCACAATTCACATTTCATTAGGGTTTCAATTTCACTCCTCTCCCATCGTCGGCGACGCCTTTAATTCCCGGAATCGCTCACCCATTCAGGCTTGA

Coding sequence (CDS)

ATGAATTTCAGATTAAAAAGGAAAAAGAAAAAGGGGAAACCTCCACGCAAGTCCCCAGCACACCTCACCGGACAATCGAGAGCGCTTCTCTGGCCTCGATCCTCCGTTCTCCGTTCTCCTTCTCCGCCTTCTTCTTCTTCTCACTTCACAATTCACATTTCATTAGGGTTTCAATTTCACTCCTCTCCCATCGTCGGCGACGCCTTTAATTCCCGGAATCGCTCACCCATTCAGGCTTGA

Protein sequence

MNFRLKRKKKKGKPPRKSPAHLTGQSRALLWPRSSVLRSPSPPSSSSHFTIHISLGFQFHSSPIVGDAFNSRNRSPIQA

Homology

[Close]

BLAST of Carg18234 vs. NCBI nr
Match: KAG7032760.1 (hypothetical protein SDJN02_06810, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MNFRLKRKKKKGKPPRKSPAHLTGQSRALLWPRSSVLRSPSPPSSSSHFTIHISLGFQFH 60
          MNFRLKRKKKKGKPPRKSPAHLTGQSRALLWPRSSVLRSPSPPSSSSHFTIHISLGFQFH
Sbjct: 1  MNFRLKRKKKKGKPPRKSPAHLTGQSRALLWPRSSVLRSPSPPSSSSHFTIHISLGFQFH 60

Query: 61 SSPIVGDAFNSRNRSPIQA 80
          SSPIVGDAFNSRNRSPIQA
Sbjct: 61 SSPIVGDAFNSRNRSPIQA 79

The following BLAST results are available for this feature:

BLAST of Carg18234 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032760.1	2.1e-35	100.00	hypothetical protein SDJN02_06810, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg18234 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18234 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18234 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18234-RA	Carg18234-RA	mRNA