Carg18069 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18069
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 11813900 .. 11815577 (+)
RNA-Seq ExpressionCarg18069
SyntenyCarg18069
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTCGCAGGTCGGTTTGGTTGAAAGTCGTCGCCCGAGCATTCCCAACCAAGAAAAGAAGAACAAAAAACCAGGAAGCCATTAGAAAGGTACAGAATCGAAACGAAAAAACTGAATTCGAGGTACAGATACTGAATTTGGCTTGAGATTTTGGTGAATTTATAGGTGGGGAAGCAGGTTTTGGGTACATGAACGAGGTGCATAGCTTGTGTTCTTCATCATACAATTTGAACAGTGACAATTAGTTGAGAAAGGCGGTTTTTGCCTGAAAATGGTATTGTTCTATTCCATTTTTTTGAAATGAAAATGCATTCTTAGCAGATCAAAAGGGCAGATTTGCATCAAAAAAGGCCACAGCAAAGGAATGAGCATAAGAACAAGCAGAATCAGAGGCACAAATGGGTTAGAACAGGTTTGTTTCCATATTTAGTAGCTCAGTTTTTGTTATTTTAATGAGACAATATGCAATCTAAAGCAGGGATCATGATAATATTTATATATCTCATATAATCCTAAAAGTGGATACTGCTTTTGATGCTTTCTTTTTATATTCATCCATGACTTAATAATAATAATACTCTGTCTGTATGCCACCATTAACACTCTAAAGATCCTCCCTCTCTGTCATACTGTTTACTGCCCTCACATGCCTAAATATGCCTCACTTTTTCTCAAGTGTTCAGAGAAAACAAAAAAAGTATTTTCTATATCCGTGGGATCCCACGTCGATTGGAAATGAGGACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCTCTAGTAGACACGTTTTAAAAAACCTTGAGGGAAAACTCAAAGAGGACAATATCGAGTAGTGGGCTTGGGTCGTTACAAATTGTGAGATCCCACATTGATAGGAGAGAGGAACGAGTGTCGAGGATGCTAGGCCTCGAAGGAGGATGAATTGTGAGATTCCACGTCGGTTGGAGAAGAGAATGGAATATTCCTTATGAAGAAGTGGAAACATCTCCCTAGTAGATGCGTTTTAAAAAACCTTGAGAGAAAATCCGAAAGGGAAAACCCAAATAGGACAATATATGTTAATAGTGGGCTTGAGCCGTTACAAATTGTGAAATCCCACATCAATGGGAGAGAAGAACGAGTGCTAGCGAGGACGTTGAGTCTCTAATAGGGTGGATTGTGAGATCCCGCATCAGTTGGAGAGGAGAATGAAATAAGGGTGTGGAAACCTCTCCATAACAGACGCGTTTTAAAAAACCTTGAGGGAAAACCCAAAAGGGAAAGTCCGAAGAGGACGATATCTGCTAGCGGTGGGCTTGGGCTTGAGCTTGAGCTGGGCTGTTTCGCTCTCTCTCTCTCTCTCGATCCTCACACACTTATGATTATCCATTAAACCTGTTATGCTTGCTTCCACTTTGTGCAACATTATCACATGTTTGAAACTCTTGTAAGCCATTTTTGTGAACCAAATCCCCATTAAGATCTTGCACAAATGATGATTATGAATATAGTTATTGAAGTTTTTGTTTACATTAAGTTAAGTTCATATCTCTCTCTGTGCCTCTGATTTTTGGACTCTTGTGAGTGTCATGAGTTTATGAAGCTAATGGGACATGTTTTTCAAAGTGTCTCTTCATAGACAGCACAGACAGCAACTCTTGTAGCTTTAAAGTCAAAGATGAACTGAAGTAA

mRNA sequence

ATGGCTGCTCGCAGGTCGGTTTGGTTGAAAGTCGTCGCCCGAGCATTCCCAACCAAGAAAAGAAGAACAAAAAACCAGGAAGCCATTAGAAAGGTACAGAATCGAAACGAAAAAACTGAATTCGAGATCAAAAGGGCAGATTTGCATCAAAAAAGGCCACAGCAAAGGAATGAGCATAAGAACAAGCAGAATCAGAGGCACAAATGGGTTAGAACAGACAGCACAGACAGCAACTCTTGTAGCTTTAAAGTCAAAGATGAACTGAAGTAA

Coding sequence (CDS)

ATGGCTGCTCGCAGGTCGGTTTGGTTGAAAGTCGTCGCCCGAGCATTCCCAACCAAGAAAAGAAGAACAAAAAACCAGGAAGCCATTAGAAAGGTACAGAATCGAAACGAAAAAACTGAATTCGAGATCAAAAGGGCAGATTTGCATCAAAAAAGGCCACAGCAAAGGAATGAGCATAAGAACAAGCAGAATCAGAGGCACAAATGGGTTAGAACAGACAGCACAGACAGCAACTCTTGTAGCTTTAAAGTCAAAGATGAACTGAAGTAA

Protein sequence

MAARRSVWLKVVARAFPTKKRRTKNQEAIRKVQNRNEKTEFEIKRADLHQKRPQQRNEHKNKQNQRHKWVRTDSTDSNSCSFKVKDELK
Homology
[Close]
BLAST of Carg18069 vs. NCBI nr
Match: KAG7022814.1 (hypothetical protein SDJN02_16550, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 2.3e-38
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MAARRSVWLKVVARAFPTKKRRTKNQEAIRKVQNRNEKTEFEIKRADLHQKRPQQRNEHK 60
          MAARRSVWLKVVARAFPTKKRRTKNQEAIRKVQNRNEKTEFEIKRADLHQKRPQQRNEHK
Sbjct: 1  MAARRSVWLKVVARAFPTKKRRTKNQEAIRKVQNRNEKTEFEIKRADLHQKRPQQRNEHK 60

Query: 61 NKQNQRHKWVRTDSTDSNSCSFKVKDELK 90
          NKQNQRHKWVRTDSTDSNSCSFKVKDELK
Sbjct: 61 NKQNQRHKWVRTDSTDSNSCSFKVKDELK 89

[Close]
BLAST of Carg18069 vs. NCBI nr
Match: KAG6589106.1 (hypothetical protein SDJN03_17671, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 8.2e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 6  SVWLKVVARAFPTKKRRTKNQEAIRKV 33
          SVWLKVVARAFPTKKRRTKNQEAIRKV
Sbjct: 54 SVWLKVVARAFPTKKRRTKNQEAIRKV 80

The following BLAST results are available for this feature:
BLAST of Carg18069 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022814.12.3e-38100.00hypothetical protein SDJN02_16550, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6589106.18.2e-04100.00hypothetical protein SDJN03_17671, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg18069 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18069 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18069 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18069-RACarg18069-RAmRNA