Carg18060 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18060
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtochlorophyllide reductase
LocationCarg_Chr11: 11874777 .. 11875586 (-)
RNA-Seq ExpressionCarg18060
SyntenyCarg18060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGGTTGGCGGCGGCAGTGAGAAGTAAACTCCACAACATAAGGAAGAGCCCACGAGTGGCTGATGAAAGCATGTTCAGCGGCGGTGGAGTCGACGGCGGCGGAAGGGTGGTCGACGGCGGCGGCCGTAGAGAGAGAAATTCACATGGGGTTTCGATAATTTACAATGTTCTTCGAACCCCATTTTCGTTTCTTTCTTGCTTCTCTCACCCACATGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCTGAAGTGAATCATCTTATGGTAAGTGACAGCATGAGATATGCTATCTTAATGTAAATGGGTTTGTGTGGATATTTGTTATAGAGCCATTGGGACTTAGTTTGGATCCTTTTAGTATTACAATTGTTGGGTCGGAATTCAAATCTTGGATCGAAATGTTACCGAGTTATGTTTGGATTCGTGTTTGAATTCGAGTTAGGTTTCAAATATGTATGTATAAAACAATGTATCACTTCACAAATTACAAAATTTTTCAATCACATTTGTCATCTTTTCCTTTCCTTAAATTTTAAATCTTTGTGTGAATTACGTACGAGACGTTACAATCCATATAATCGAGTCTTAAAGCAGTTCAGTCTTTCTCGACCAAATCAAGCATTTGGGGATTATGGATAAATGTTCACTATAGGAGGGATTACGAAAATATTAAGTTTGAACGGGATCTGATGAGTGGCTTGTGGGAGGCAGGGATCTGTATCGGATTGGAATGTCACCTCTGATTCTATTTCGGTATCCAATCTCGCTACTGTGACGCTCGGTTGA

mRNA sequence

ATGTGGCGGTTGGCGGCGGCAGTGAGAAGTAAACTCCACAACATAAGGAAGAGCCCACGAGTGGCTGATGAAAGCATGTTCAGCGGCGGTGGAGTCGACGGCGGCGGAAGGGTGGTCGACGGCGGCGGCCGTAGAGAGAGAAATTCACATGGGGTTTCGATAATTTACAATGTTCTTCGAACCCCATTTTCGTTTCTTTCTTGCTTCTCTCACCCACATGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCTGAAGTGAATCATCTTATGGGATCTGTATCGGATTGGAATGTCACCTCTGATTCTATTTCGGTATCCAATCTCGCTACTGTGACGCTCGGTTGA

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCAGTGAGAAGTAAACTCCACAACATAAGGAAGAGCCCACGAGTGGCTGATGAAAGCATGTTCAGCGGCGGTGGAGTCGACGGCGGCGGAAGGGTGGTCGACGGCGGCGGCCGTAGAGAGAGAAATTCACATGGGGTTTCGATAATTTACAATGTTCTTCGAACCCCATTTTCGTTTCTTTCTTGCTTCTCTCACCCACATGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCTGAAGTGAATCATCTTATGGGATCTGTATCGGATTGGAATGTCACCTCTGATTCTATTTCGGTATCCAATCTCGCTACTGTGACGCTCGGTTGA

Protein sequence

MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLRTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVSDWNVTSDSISVSNLATVTLG
Homology
BLAST of Carg18060 vs. NCBI nr
Match: KAG7022822.1 (hypothetical protein SDJN02_16558, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.8 bits (621), Expect = 7.5e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60
           MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60

Query: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVSDWNVTSDSISVSNLATVTLG 120
           TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVSDWNVTSDSISVSNLATVTLG
Sbjct: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVSDWNVTSDSISVSNLATVTLG 120

BLAST of Carg18060 vs. NCBI nr
Match: KAG6589118.1 (hypothetical protein SDJN03_17683, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.1 bits (510), Expect = 5.6e-48
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60
           MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60

Query: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVS 101
           TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLM S S
Sbjct: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDS 100

BLAST of Carg18060 vs. NCBI nr
Match: XP_022930627.1 (uncharacterized protein LOC111437033 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60
           MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGG RRERNSHGVSIIYNVLR
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGRRRERNSHGVSIIYNVLR 60

Query: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVS 101
           TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLM S S
Sbjct: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDS 100

BLAST of Carg18060 vs. NCBI nr
Match: XP_023530311.1 (uncharacterized protein LOC111792917 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0

Query: 1  MWRLAAAVRSKLHNIRK-SPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVL 60
          MWRLAAAVRSKLHNIRK SPRVADESMFSGGGVDGGGRVVDGG RRERNSHGVSIIYNVL
Sbjct: 1  MWRLAAAVRSKLHNIRKRSPRVADESMFSGGGVDGGGRVVDGGDRRERNSHGVSIIYNVL 60

Query: 61 RTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLM 97
          RTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLM
Sbjct: 61 RTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLM 97

BLAST of Carg18060 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 8.3e-36
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFS-GGGVDGGGRVVDGGGRRERNSHGVSIIYNVL 60
           MWRLAAAVR  LHNIRKSPRVADESM+S GGG DGGGRV+D G RR+ NS+G S+IY +L
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVID-GNRRDGNSYGFSMIYTLL 60

Query: 61  RTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVS 101
           RTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLM S S
Sbjct: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDS 100

BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60
           MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGG RRERNSHGVSIIYNVLR
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGRRRERNSHGVSIIYNVLR 60

Query: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVS 101
           TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLM S S
Sbjct: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDS 100

BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.4e-35
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGR---VVDGGGRRERNSHGVSIIYN 60
           MWRLAAAVR  LHNIRKSPRVADESM+ GGGVDGGGR   VV  G RRE NS+G S+IY+
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVAAVVVDGDRREGNSYGFSMIYS 100

Query: 61  VLRTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGS 99
           +LRTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLM S
Sbjct: 101 LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQS 140

BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGR---VVDGGGRRERNSHGVSIIYN 60
           MWRLAAAVR  LHNIRKSPRVADESM+ GGGVDGGGR   VV  G RRE NS+G S+IY+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVAAVVVDGDRREGNSYGFSMIYS 60

Query: 61  VLRTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVS 101
           +LRTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLM S S
Sbjct: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDS 102

BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 80/101 (79.21%), Postives = 85/101 (84.16%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFS-GGGVDGGGRVVDGGGRRERNSHGVSIIYNVL 60
           MWRLAAAVR  LHNIRKSPRVADESM+S GGG DGG  V+D G RRE NS+G S+IY +L
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVID-GNRREGNSYGFSMIYTLL 60

Query: 61  RTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVS 101
           RTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLM S S
Sbjct: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDS 100

BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.0e-32
Identity = 74/100 (74.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60
           MWRLAA +R  LHNIRKSPRVADESM+ GGG DGGG +V    RR  NS+G S+IY+VLR
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGG-IVAERDRRGGNSYGFSMIYSVLR 60

Query: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVS 101
           TPFS L CFS PHVNG DG+WVSGEFARISEVNHLM S S
Sbjct: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDS 99

BLAST of Carg18060 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-16
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 0

Query: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60
           M ++ + +R  L N+RKSPRVAD++         G  VV  G R   NS        ++R
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNS-------VIMR 60

Query: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVS 101
            PFS +SCF+ P V+G DG+WVSG++  ISEVNHLM S S
Sbjct: 61  FPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDS 93

BLAST of Carg18060 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 0

Query: 1  MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLR 60
          M ++ + +R  L N+RKSPRVADES      V+G     D GG    N         +++
Sbjct: 1  MLKMLSILRRNLQNLRKSPRVADESALPSTTVNG-----DHGGGNGSNG-------GIMK 60

Query: 61 TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLM 97
           P S +SCFS P V+  DG+WVSG++ R+SEVNHLM
Sbjct: 61 FPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLM 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7022822.17.5e-61100.00hypothetical protein SDJN02_16558, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6589118.15.6e-4898.00hypothetical protein SDJN03_17683, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022930627.14.7e-4797.00uncharacterized protein LOC111437033 [Cucurbita moschata][more]
XP_023530311.11.2e-4597.94uncharacterized protein LOC111792917 [Cucurbita pepo subsp. pepo][more]
KAG6572248.18.3e-3680.20hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ER342.3e-4797.00uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
A0A1S3C1343.4e-3580.20uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=... [more]
A0A5D3BTM84.5e-3579.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1HZK34.5e-3579.21uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352... [more]
A0A6J1C6U06.0e-3274.00uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
Match NameE-valueIdentityDescription
AT5G35732.13.5e-1645.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G04795.11.7e-1543.75unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48165BNAC03G44900D PROTEINcoord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18060-RACarg18060-RAmRNA