Carg18060 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGCGGTTGGCGGCGGCAGTGAGAAGTAAACTCCACAACATAAGGAAGAGCCCACGAGTGGCTGATGAAAGCATGTTCAGCGGCGGTGGAGTCGACGGCGGCGGAAGGGTGGTCGACGGCGGCGGCCGTAGAGAGAGAAATTCACATGGGGTTTCGATAATTTACAATGTTCTTCGAACCCCATTTTCGTTTCTTTCTTGCTTCTCTCACCCACATGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCTGAAGTGAATCATCTTATGGTAAGTGACAGCATGAGATATGCTATCTTAATGTAAATGGGTTTGTGTGGATATTTGTTATAGAGCCATTGGGACTTAGTTTGGATCCTTTTAGTATTACAATTGTTGGGTCGGAATTCAAATCTTGGATCGAAATGTTACCGAGTTATGTTTGGATTCGTGTTTGAATTCGAGTTAGGTTTCAAATATGTATGTATAAAACAATGTATCACTTCACAAATTACAAAATTTTTCAATCACATTTGTCATCTTTTCCTTTCCTTAAATTTTAAATCTTTGTGTGAATTACGTACGAGACGTTACAATCCATATAATCGAGTCTTAAAGCAGTTCAGTCTTTCTCGACCAAATCAAGCATTTGGGGATTATGGATAAATGTTCACTATAGGAGGGATTACGAAAATATTAAGTTTGAACGGGATCTGATGAGTGGCTTGTGGGAGGCAGGGATCTGTATCGGATTGGAATGTCACCTCTGATTCTATTTCGGTATCCAATCTCGCTACTGTGACGCTCGGTTGA ATGTGGCGGTTGGCGGCGGCAGTGAGAAGTAAACTCCACAACATAAGGAAGAGCCCACGAGTGGCTGATGAAAGCATGTTCAGCGGCGGTGGAGTCGACGGCGGCGGAAGGGTGGTCGACGGCGGCGGCCGTAGAGAGAGAAATTCACATGGGGTTTCGATAATTTACAATGTTCTTCGAACCCCATTTTCGTTTCTTTCTTGCTTCTCTCACCCACATGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCTGAAGTGAATCATCTTATGGGATCTGTATCGGATTGGAATGTCACCTCTGATTCTATTTCGGTATCCAATCTCGCTACTGTGACGCTCGGTTGA ATGTGGCGGTTGGCGGCGGCAGTGAGAAGTAAACTCCACAACATAAGGAAGAGCCCACGAGTGGCTGATGAAAGCATGTTCAGCGGCGGTGGAGTCGACGGCGGCGGAAGGGTGGTCGACGGCGGCGGCCGTAGAGAGAGAAATTCACATGGGGTTTCGATAATTTACAATGTTCTTCGAACCCCATTTTCGTTTCTTTCTTGCTTCTCTCACCCACATGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCTGAAGTGAATCATCTTATGGGATCTGTATCGGATTGGAATGTCACCTCTGATTCTATTTCGGTATCCAATCTCGCTACTGTGACGCTCGGTTGA MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGGRRERNSHGVSIIYNVLRTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMGSVSDWNVTSDSISVSNLATVTLG Homology
BLAST of Carg18060 vs. NCBI nr
Match: KAG7022822.1 (hypothetical protein SDJN02_16558, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 243.8 bits (621), Expect = 7.5e-61 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of Carg18060 vs. NCBI nr
Match: KAG6589118.1 (hypothetical protein SDJN03_17683, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 201.1 bits (510), Expect = 5.6e-48 Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0
BLAST of Carg18060 vs. NCBI nr
Match: XP_022930627.1 (uncharacterized protein LOC111437033 [Cucurbita moschata]) HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47 Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 0
BLAST of Carg18060 vs. NCBI nr
Match: XP_023530311.1 (uncharacterized protein LOC111792917 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45 Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of Carg18060 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 160.6 bits (405), Expect = 8.3e-36 Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 0
BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47 Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 0
BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 3.4e-35 Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 0
BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35 Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0
BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35 Identity = 80/101 (79.21%), Postives = 85/101 (84.16%), Query Frame = 0
BLAST of Carg18060 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 6.0e-32 Identity = 74/100 (74.00%), Postives = 81/100 (81.00%), Query Frame = 0
BLAST of Carg18060 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 82.0 bits (201), Expect = 3.5e-16 Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 0
BLAST of Carg18060 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15 Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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