Carg18037 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18037
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMediator of RNA polymerase II transcription subunit 13
LocationCarg_Chr11: 3694474 .. 3695774 (+)
RNA-Seq ExpressionCarg18037
SyntenyCarg18037
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCTCAGATGGATGGGTTTGACGAGGTCATCCAAAAGAATCCTAGACATCCACACTGCTTGCTATGGATGGACAGAACGGACTGGGCTGGCTCTGATAGTATGCATCTGGACAGATCACGAGAGAATTATTAGACATCATATATTTCCCTTTGGTGGGATCAGCCAGTAGGCAGGGATACGAAGGGTCTGGAATGCATTTTTGTCCAAGTTCTGCCCAGCAAGGCTGTATGATACTTCAGTCATGTCTTTCTCCTGATACTAGTGTTTCCAAGCCTAGAGATTTGGTTATTGCAAGAATTGGAACCATTCTACGAACTCGAGTTTCTAGGTAAATTCCTCTATTTCATTATTATTTCAGCTTTCAATTGTTTATCGCTCACGTCCTTTCAGTAGCATCTGCTTCTTGTAATCTAATACCCTCTGTGGATCCCACGTCGGTTAGGAGAGCGGAACAAAACCATCCTTTAAAGGGTGTAATGTGGGAAATCTCCTCCCGTAGTAGACGCGTTTTTAAAAACCTTTGGGACAATACTGCTAGTATGGGCTTGGCTCTTACAAATTATCAGAGCCAGGTTTCGGGCTGGACCTCTCTCGGCTCCTGTGCCAGCGAGAAGGCTGAGCCCCGAAGGGGGTGGACATGAGGCGATCTTGTCCAGCAAAGACGTTGGGCCCCAAGGGGTGGATTGTGGAGATCCCACCATTCGGTGTTGCGGGAGGAGAACAAAACAACCTTCTATAAGGTGTGGAAACCTTCTCTACCCCTAGCAGGACTTGCATTTAAAAACTTGAGAGGAGCCCGGAAAGGGGAGCCCAAAAGACAGTATATGCTAGCGTGGGCTTTATTCTCACAAGTCATCAATCTCTCACCTTCAGATGCGAGCTCCTGGGAAATGACTCCCCATTAATAACTCACAAGTTGTTTTCTTGATGACTTTTACGAACACGGCCTATAATTTCACATTCCATCCGTTAAAATTTAAAAATTTTTCTATTAGATTTTATGGGGAGTCGTTATTTAAACTAATTTCTGACCTGTTTTGGAACTATGTTTCGGGATTTTGCCACCTTATTATGATAGAGTGGCAGAAGGCCATTTATTCACTATGGGGATCTGACGGCGGAAAAAAAAATCGGCCGTTGCCAACAAACTTCGCCGCTGCCATGCCCCGATGCGGGATTATCATCAAGTAGCAACGGGACCTTCCTCTGCCAACAACAGGCAGATGAGTGTATTGGACTCACGATCAGAAACCTTCCTTCCTCCCAATCCTTATAGCCCGCATTCCAAAATTCTA

mRNA sequence

ATGGACCCTCAGATGGATGGGTTTGACGAGGTCATCCAAAAGAATCCTAGACATCCACACTGCTTGCTATGGATGGACAGAACGGACTGGGCTGGCTCTGATACCAGTAGGCAGGGATACGAAGGGTCTGGAATGCATTTTTGTCCAAGTTCTGCCCAGCAAGGCTGTATGATACTTCAGTCATGTCTTTCTCCTGATACTAGTGTTTCCAAGCCTAGAGATTTGGTTATTGCAAGAATTGGAACCATTCTACGAACTCGAGTTTCTAGAGCCAGGTTTCGGGCTGGACCTCTCTCGGCTCCTGTGCCAGCGAGAAGGCTGAGCCCCGAAGGGGGTGGACATGAGGCGATCTTGTCCAGCAAAGACGTTGGGCCCCAAGGGAGTGGCAGAAGGCCATTTATTCACTATGGGGATCTGACGGCGGAAAAAAAAATCGGCCGTTGCCAACAAACTTCGCCGCTGCCATGCCCCGATGCGGGATTATCATCAAGTAGCAACGGGACCTTCCTCTGCCAACAACAGGCAGATGAGTGTATTGGACTCACGATCAGAAACCTTCCTTCCTCCCAATCCTTATAGCCCGCATTCCAAAATTCTA

Coding sequence (CDS)

ATGGACCCTCAGATGGATGGGTTTGACGAGGTCATCCAAAAGAATCCTAGACATCCACACTGCTTGCTATGGATGGACAGAACGGACTGGGCTGGCTCTGATACCAGTAGGCAGGGATACGAAGGGTCTGGAATGCATTTTTGTCCAAGTTCTGCCCAGCAAGGCTGTATGATACTTCAGTCATGTCTTTCTCCTGATACTAGTGTTTCCAAGCCTAGAGATTTGGTTATTGCAAGAATTGGAACCATTCTACGAACTCGAGTTTCTAGAGCCAGGTTTCGGGCTGGACCTCTCTCGGCTCCTGTGCCAGCGAGAAGGCTGAGCCCCGAAGGGGGTGGACATGAGGCGATCTTGTCCAGCAAAGACGTTGGGCCCCAAGGGAGTGGCAGAAGGCCATTTATTCACTATGGGGATCTGACGGCGGAAAAAAAAATCGGCCGTTGCCAACAAACTTCGCCGCTGCCATGCCCCGATGCGGGATTATCATCAAGTAGCAACGGGACCTTCCTCTGCCAACAACAGGCAGATGAGTGTATTGGACTCACGATCAGAAACCTTCCTTCCTCCCAATCCTTATAG

Protein sequence

MDPQMDGFDEVIQKNPRHPHCLLWMDRTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGTILRTRVSRARFRAGPLSAPVPARRLSPEGGGHEAILSSKDVGPQGSGRRPFIHYGDLTAEKKIGRCQQTSPLPCPDAGLSSSSNGTFLCQQQADECIGLTIRNLPSSQSL
Homology
[Close]
BLAST of Carg18037 vs. NCBI nr
Match: KAG7022021.1 (hypothetical protein SDJN02_15750, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 400.6 bits (1028), Expect = 7.7e-108
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MDPQMDGFDEVIQKNPRHPHCLLWMDRTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQ 60
           MDPQMDGFDEVIQKNPRHPHCLLWMDRTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQ
Sbjct: 1   MDPQMDGFDEVIQKNPRHPHCLLWMDRTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQ 60

Query: 61  SCLSPDTSVSKPRDLVIARIGTILRTRVSRARFRAGPLSAPVPARRLSPEGGGHEAILSS 120
           SCLSPDTSVSKPRDLVIARIGTILRTRVSRARFRAGPLSAPVPARRLSPEGGGHEAILSS
Sbjct: 61  SCLSPDTSVSKPRDLVIARIGTILRTRVSRARFRAGPLSAPVPARRLSPEGGGHEAILSS 120

Query: 121 KDVGPQGSGRRPFIHYGDLTAEKKIGRCQQTSPLPCPDAGLSSSSNGTFLCQQQADECIG 180
           KDVGPQGSGRRPFIHYGDLTAEKKIGRCQQTSPLPCPDAGLSSSSNGTFLCQQQADECIG
Sbjct: 121 KDVGPQGSGRRPFIHYGDLTAEKKIGRCQQTSPLPCPDAGLSSSSNGTFLCQQQADECIG 180

Query: 181 LTIRNLPSSQSL 193
           LTIRNLPSSQSL
Sbjct: 181 LTIRNLPSSQSL 192

[Close]
BLAST of Carg18037 vs. NCBI nr
Match: XP_023529870.1 (mediator of RNA polymerase II transcription subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-07
Identity = 47/99 (47.47%), Postives = 51/99 (51.52%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGS 62
            P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G 
Sbjct: 1528 PEMDGFGG-HQKNPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISSRQDTKGL 1587

Query: 63   GMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT 83
               F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Sbjct: 1588 ECIFV-QVLQQGCMILQSC-SPDTSVSKPRDLVIARIGT 1623

[Close]
BLAST of Carg18037 vs. NCBI nr
Match: XP_022966517.1 (mediator of RNA polymerase II transcription subunit 13 [Cucurbita maxima])

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-07
Identity = 47/99 (47.47%), Postives = 51/99 (51.52%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGS 62
            P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G 
Sbjct: 1527 PEMDGFGG-HQKNPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISSRQDTKGL 1586

Query: 63   GMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT 83
               F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Sbjct: 1587 ECIFV-QVLQQGCMILQSC-SPDTSVSKPRDLVIARIGT 1622

[Close]
BLAST of Carg18037 vs. NCBI nr
Match: KAG6588129.1 (Mediator of RNA polymerase II transcription subunit 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-07
Identity = 47/99 (47.47%), Postives = 51/99 (51.52%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGS 62
            P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G 
Sbjct: 1576 PEMDGFGG-HQKNPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISSRQDTKGL 1635

Query: 63   GMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT 83
               F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Sbjct: 1636 ECIFV-QVLQQGCMILQSC-SPDTSVSKPRDLVIARIGT 1671

[Close]
BLAST of Carg18037 vs. NCBI nr
Match: XP_022930825.1 (mediator of RNA polymerase II transcription subunit 13 [Cucurbita moschata])

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-07
Identity = 47/99 (47.47%), Postives = 51/99 (51.52%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGS 62
            P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G 
Sbjct: 1527 PEMDGFGG-HQKNPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISSRQDTKGL 1586

Query: 63   GMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT 83
               F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Sbjct: 1587 ECIFV-QVLQQGCMILQSC-SPDTSVSKPRDLVIARIGT 1622

[Close]
BLAST of Carg18037 vs. ExPASy TrEMBL
Match: A0A6J1HN68 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC111466165 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 47/99 (47.47%), Postives = 51/99 (51.52%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGS 62
            P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G 
Sbjct: 1527 PEMDGFGG-HQKNPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISSRQDTKGL 1586

Query: 63   GMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT 83
               F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Sbjct: 1587 ECIFV-QVLQQGCMILQSC-SPDTSVSKPRDLVIARIGT 1622

[Close]
BLAST of Carg18037 vs. ExPASy TrEMBL
Match: A0A6J1EXV9 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucurbita moschata OX=3662 GN=LOC111437192 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 47/99 (47.47%), Postives = 51/99 (51.52%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGS 62
            P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G 
Sbjct: 1527 PEMDGFGG-HQKNPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISSRQDTKGL 1586

Query: 63   GMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT 83
               F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Sbjct: 1587 ECIFV-QVLQQGCMILQSC-SPDTSVSKPRDLVIARIGT 1622

[Close]
BLAST of Carg18037 vs. ExPASy TrEMBL
Match: A0A5A7UKX2 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001000 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-06
Identity = 46/99 (46.46%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHCLL-WMDRTDWA-------------------GSDTSRQGYEG 62
            P+MDGF    QKNP   HC   W +   W                    G  +SRQ  +G
Sbjct: 1154 PEMDGFGCGHQKNP-SLHCSYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISSRQDTKG 1213

Query: 63   SGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG 82
                F     QQGCMILQSC SPDT VSKPRDLVIARIG
Sbjct: 1214 LECIFV-QVLQQGCMILQSC-SPDTGVSKPRDLVIARIG 1249

[Close]
BLAST of Carg18037 vs. ExPASy TrEMBL
Match: A0A5D3CEL2 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00940 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-06
Identity = 46/99 (46.46%), Postives = 50/99 (50.51%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHCLL-WMDRTDWA-------------------GSDTSRQGYEG 62
            P+MDGF    QKNP   HC   W +   W                    G  +SRQ  +G
Sbjct: 1127 PEMDGFGCGHQKNP-SLHCSYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISSRQDTKG 1186

Query: 63   SGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG 82
                F     QQGCMILQSC SPDT VSKPRDLVIARIG
Sbjct: 1187 LECIFV-QVLQQGCMILQSC-SPDTGVSKPRDLVIARIG 1222

[Close]
BLAST of Carg18037 vs. ExPASy TrEMBL
Match: A0A0A0M2D5 (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_1G599542 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-06
Identity = 47/99 (47.47%), Postives = 51/99 (51.52%), Query Frame = 0 

Query: 3    PQMDGFDEVIQKNPRHPHC------------LLWMD--------RTDWAGSDTSRQGYEG 62
            P+MDGF    QKNP   HC             +W D         T   G  +SRQ  +G
Sbjct: 1069 PEMDGFGCGHQKNP-SLHCSYGWTEDWRWLVCIWTDSRGELLDSHTFPFGGISSRQDTKG 1128

Query: 63   SGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG 82
                F     QQGCMILQSC SPDT VSKPRDLVIARIG
Sbjct: 1129 LECIFV-QVLQQGCMILQSC-SPDTGVSKPRDLVIARIG 1164

The following BLAST results are available for this feature:
BLAST of Carg18037 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022021.17.7e-108100.00hypothetical protein SDJN02_15750, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023529870.14.5e-0747.47mediator of RNA polymerase II transcription subunit 13 [Cucurbita pepo subsp. pe... [more]
XP_022966517.14.5e-0747.47mediator of RNA polymerase II transcription subunit 13 [Cucurbita maxima][more]
KAG6588129.14.5e-0747.47Mediator of RNA polymerase II transcription subunit 13, partial [Cucurbita argyr... [more]
XP_022930825.14.5e-0747.47mediator of RNA polymerase II transcription subunit 13 [Cucurbita moschata][more]
BLAST of Carg18037 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18037 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HN682.2e-0747.47Mediator of RNA polymerase II transcription subunit 13 OS=Cucurbita maxima OX=36... [more]
A0A6J1EXV92.2e-0747.47Mediator of RNA polymerase II transcription subunit 13 OS=Cucurbita moschata OX=... [more]
A0A5A7UKX23.1e-0646.46Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo var. maku... [more]
A0A5D3CEL23.1e-0646.46Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo var. maku... [more]
A0A0A0M2D53.1e-0647.47Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis sativus OX=365... [more]
BLAST of Carg18037 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18037-RACarg18037-RAmRNA