Carg17851 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17851
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubulin beta chain
Location	Carg_Chr10: 4428014 .. 4428918 (+)
RNA-Seq Expression	Carg17851
Synteny	Carg17851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTCTACCGCCGGAACCGACCCCATTTTGTTCTCTTTCGCCGGAGCTTGCTCGGTAAGTTTCAATTTCTCAGATCTGATTGCTGCATTTGATTCCTTCCGTGTTCTAGATTTGGAAAACTAAGAGTGATCTGGTATTGTCTTATTCTCACATAGAAATGTCATGAATCTGTAATTTGATCGGGTTTCTTTCGAACTCTATGGAATATTCTGGCACCGAAATTTGATGAATCTGTGATTTGTGCTGGGTGATTTGGTTGAAGTTCACTGCATTGTGTGGAATTTCACTTCCTTGTTTGGAATGCTTCCGATCCAATGTCTACGATGATATTGAAATGTATGCATTCGATGCAGAGGATTTTGAGTTTCGATGTCTTATTGATCTCATTTTGCTGATCTTCTATTCTGTGTTCTTTGATTTTGGTGCCAATCGAATTATGTGTTTAACTTCAGAGTGTTCTTGTGGACAGTAAGAAGATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

mRNA sequence

CCGTCTACCGCCGGAACCGACCCCATTTTGTTCTCTTTCGCCGGAGCTTGCTCGGTAAGTTTCAATTTCTCAGATCTGATTGCTGCATTTGATTCCTTCCGTGTTCTAGATTTGGAAAACTAAGAGTGATCTGGTATTGTCTTATTCTCACATAGAAATGTCATGAATCTGTAATTTGATCGGGTTTCTTTCGAACTCTATGGAATATTCTGGCACCGAAATTTGATGAATCTGTGATTTGTGCTGGGTGATTTGGTTGAAGTTCACTGCATTGTGTGGAATTTCACTTCCTTGTTTGGAATGCTTCCGATCCAATGTCTACGATGATATTGAAATTAAGAAGATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

Coding sequence (CDS)

ATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

Protein sequence

MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGINLCLRSSCA

Homology

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BLAST of Carg17851 vs. NCBI nr
Match: KAG7023820.1 (Tubulin beta-2 chain [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.5 bits (789), Expect = 2.9e-80
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLCLRSSCA 143
           RKEAENCDCLQGINLCLRSSCA
Sbjct: 121 RKEAENCDCLQGINLCLRSSCA 142

[Close]

BLAST of Carg17851 vs. NCBI nr
Match: XP_022961097.1 (tubulin beta-6 chain [Cucurbita moschata] >XP_022961098.1 tubulin beta-6 chain [Cucurbita moschata] >XP_022988111.1 tubulin beta-6 chain [Cucurbita maxima] >XP_022988112.1 tubulin beta-6 chain [Cucurbita maxima] >XP_023516484.1 tubulin beta-6 chain [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. NCBI nr
Match: TYK28165.1 (tubulin beta-6 chain [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. NCBI nr
Match: XP_008450322.1 (PREDICTED: tubulin beta-6 chain [Cucumis melo] >KAA0055961.1 tubulin beta-6 chain [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. NCBI nr
Match: XP_038880213.1 (tubulin beta-6 chain [Benincasa hispida] >XP_038880214.1 tubulin beta-6 chain [Benincasa hispida])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy Swiss-Prot
Match: Q9ZPN9 (Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy Swiss-Prot
Match: Q9ZRB1 (Tubulin beta-2 chain OS=Triticum aestivum OX=4565 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy Swiss-Prot
Match: P93176 (Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy Swiss-Prot
Match: P29514 (Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.6e-76
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy Swiss-Prot
Match: Q43594 (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-76
Identity = 128/136 (94.12%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY GTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy TrEMBL
Match: A0A6J1JC64 (Tubulin beta chain OS=Cucurbita maxima OX=3661 GN=LOC111485455 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy TrEMBL
Match: A0A6J1HAW4 (Tubulin beta chain OS=Cucurbita moschata OX=3662 GN=LOC111461710 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy TrEMBL
Match: A0A5A7UQW7 (Tubulin beta chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00890 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy TrEMBL
Match: A0A5D3DXV4 (Tubulin beta chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00790 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. ExPASy TrEMBL
Match: A0A0A0LXT7 (Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G629200 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. TAIR 10
Match: AT5G12250.1 (beta-6 tubulin )

HSP 1 Score: 286.6 bits (732), Expect = 1.1e-77
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. TAIR 10
Match: AT5G62690.1 (tubulin beta chain 2 )

HSP 1 Score: 276.6 bits (706), Expect = 1.1e-74
Identity = 122/136 (89.71%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. TAIR 10
Match: AT5G62700.1 (tubulin beta chain 3 )

HSP 1 Score: 276.6 bits (706), Expect = 1.1e-74
Identity = 122/136 (89.71%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851 vs. TAIR 10
Match: AT1G75780.1 (tubulin beta-1 chain )

HSP 1 Score: 275.4 bits (703), Expect = 2.6e-74
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTS-DLQLERVNVYYNEASCGRY 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHG+DPTGRY G S DLQLER+NVYYNEAS GRY
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
           VPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQGINLC 137
           VRKEAENCDCLQG  +C
Sbjct: 121 VRKEAENCDCLQGFQVC 137

[Close]

BLAST of Carg17851 vs. TAIR 10
Match: AT5G23860.1 (tubulin beta 8 )

HSP 1 Score: 273.5 bits (698), Expect = 9.7e-74
Identity = 122/136 (89.71%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G +DLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

The following BLAST results are available for this feature:

BLAST of Carg17851 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023820.1	2.9e-80	100.00	Tubulin beta-2 chain [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961097.1	2.2e-75	97.79	tubulin beta-6 chain [Cucurbita moschata] >XP_022961098.1 tubulin beta-6 chain [...	[more]
TYK28165.1	2.2e-75	97.79	tubulin beta-6 chain [Cucumis melo var. makuwa]	[more]
XP_008450322.1	2.2e-75	97.79	PREDICTED: tubulin beta-6 chain [Cucumis melo] >KAA0055961.1 tubulin beta-6 chai...	[more]
XP_038880213.1	2.2e-75	97.79	tubulin beta-6 chain [Benincasa hispida] >XP_038880214.1 tubulin beta-6 chain [B...	[more]

BLAST of Carg17851 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPN9	1.2e-76	94.12	Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1	[more]
Q9ZRB1	1.2e-76	94.12	Tubulin beta-2 chain OS=Triticum aestivum OX=4565 GN=TUBB2 PE=2 SV=1	[more]
P93176	1.2e-76	94.12	Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1	[more]
P29514	1.6e-76	94.12	Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1	[more]
Q43594	2.0e-76	94.12	Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2	[more]

BLAST of Carg17851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JC64	1.1e-75	97.79	Tubulin beta chain OS=Cucurbita maxima OX=3661 GN=LOC111485455 PE=3 SV=1	[more]
A0A6J1HAW4	1.1e-75	97.79	Tubulin beta chain OS=Cucurbita moschata OX=3662 GN=LOC111461710 PE=3 SV=1	[more]
A0A5A7UQW7	1.1e-75	97.79	Tubulin beta chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G0...	[more]
A0A5D3DXV4	1.1e-75	97.79	Tubulin beta chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G0...	[more]
A0A0A0LXT7	1.1e-75	97.79	Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G629200 PE=3 SV=1	[more]

BLAST of Carg17851 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12250.1	1.1e-77	94.12	beta-6 tubulin	[more]
AT5G62690.1	1.1e-74	89.71	tubulin beta chain 2	[more]
AT5G62700.1	1.1e-74	89.71	tubulin beta chain 3	[more]
AT1G75780.1	2.6e-74	91.24	tubulin beta-1 chain	[more]
AT5G23860.1	9.7e-74	89.71	tubulin beta 8	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 88..99 score: 94.76 coord: 41..58 score: 75.84 coord: 108..126 score: 84.57
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 93..104 score: 76.26 coord: 51..70 score: 66.6 coord: 10..30 score: 71.89 coord: 106..130 score: 68.98
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..136
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	3.40.50.1440	Tubulin/FtsZ, GTPase domain	coord: 1..140 e-value: 5.2E-64 score: 218.1
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	52490	Tubulin nucleotide-binding domain-like	coord: 1..137
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..136 e-value: 4.9E-38 score: 131.3
None	No IPR available	PANTHER	PTHR11588:SF351	TUBULIN BETA-2 CHAIN	coord: 1..136
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17851-RA	Carg17851-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0009409	response to cold
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005200	structural constituent of cytoskeleton