Carg17840 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17840
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 4371008 .. 4371484 (-)
RNA-Seq ExpressionCarg17840
SyntenyCarg17840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTTTATAAGGGTGTGGAAACCTCTCCAAGCTGTTACATAATATACAACCCGTGGTCGTGTATTCATGTTAGGTTGCTTGTATATATCATACACAGTGTTTGTGCACGCACCTGCCATCCTCAACTAGCCGGGTTTCGATTCTTCCACGAATATCTAGCAGTTTTATCCTATACTGTTTGTAATGCTCGTTCGAATGACTTGATCTGATATCGACTGTTCGGGTTTCTCCTTGAATCCAATCTCTCTTACTTTCTTCCTCCATCTTTTACAGGTCATGGATCCTGCATATTCACAGGAAGGTAAGTGGGAAAATTACACCAAAACGAAATCATCTGTTTATATATCAATTACTTGAGTTCTAAACTGTTTCAAATATTGAAAAACAGTGCCAATTCACGCGGAGGAGGCGGATTTTCTCCTGAAGCAGCCATGGGGCCTTCAGGTCTGCTTCCTGGTGCAAGTTCAAAGCTACAG

mRNA sequence

CATTTTTATAAGGGTGTGGAAACCTCTCCAAGCTGTTACATAATATACAACCCGTGGTCGTGTATTCATGTTAGGTTGCTTGTATATATCATACACAGTGTTTGTGCACGCACCTGCCATCCTCAACTAGCCGGGTTTCGATTCTTCCACGAATATCTAGCAGTTTTATCCTATACTGTTTGTAATGCTCGTTCGAATGACTTGATCTGATATCGACTGTTCGGGTTTCTCCTTGAATCCAATCTCTCTTACTTTCTTCCTCCATCTTTTACAGGTCATGGATCCTGCATATTCACAGGAAGTGCCAATTCACGCGGAGGAGGCGGATTTTCTCCTGAAGCAGCCATGGGGCCTTCAGGTCTGCTTCCTGGTGCAAGTTCAAAGCTACAG

Coding sequence (CDS)

CATTTTTATAAGGGTGTGGAAACCTCTCCAAGCTGTTACATAATATACAACCCGTGGTCGTGTATTCATGTTAGGTTGCTTGTATATATCATACACAGTGTTTGTGCACGCACCTGCCATCCTCAACTAGCCGGGTTTCGATTCTTCCACGAATATCTAGCAGTTTTATCCTATACTGTTTGTAATGCTCGTTCGAATGACTTGATCTGA

Protein sequence

HFYKGVETSPSCYIIYNPWSCIHVRLLVYIIHSVCARTCHPQLAGFRFFHEYLAVLSYTVCNARSNDLI
Homology
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BLAST of Carg17840 vs. NCBI nr
Match: KAG7023809.1 (hypothetical protein SDJN02_14835, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 5.9e-34
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  HFYKGVETSPSCYIIYNPWSCIHVRLLVYIIHSVCARTCHPQLAGFRFFHEYLAVLSYTV 60
          HFYKGVETSPSCYIIYNPWSCIHVRLLVYIIHSVCARTCHPQLAGFRFFHEYLAVLSYTV
Sbjct: 1  HFYKGVETSPSCYIIYNPWSCIHVRLLVYIIHSVCARTCHPQLAGFRFFHEYLAVLSYTV 60

Query: 61 CNARSNDLI 70
          CNARSNDLI
Sbjct: 61 CNARSNDLI 69

The following BLAST results are available for this feature:
BLAST of Carg17840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023809.15.9e-34100.00hypothetical protein SDJN02_14835, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg17840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17840 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17840-RACarg17840-RAmRNA