Carg17832 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17832
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncoiled-coil domain-containing protein R3HCC1L
LocationCarg_Chr10: 4303759 .. 4311371 (-)
RNA-Seq ExpressionCarg17832
SyntenyCarg17832
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACGACTGAGATATTTATAAACTTTCTGCGCGACTTCCTCATCTTCCTCTGTTGCTTGATTATCAACCGGAGCGATGGACAAAGAAGAAGAACGGCAACAGCGGCGATCGAACTGGAGTGAGACAGTGGAGGATCTCGTCACTGCCGGTGACACTGATGCTGCAATTTCTCTTCTCGAATCGGTGATTTCTGACCTCCAAACTTCAGAAAACTCTAATCCAGATCCTCAATTGGCCGCCGCTCTCACCGACTTGTCTGCTCTTTACTCTTCTAAAGGTTTCTCTCTTAAAGCCGACGACATTGCGGCTAAAGCTTTGGTTCTTAAACAGCAAGACCAAGTCTCTTCTTCGGCTGGGTAAACTTCTTGTTCGAAATGTTAGCATTCAAGTTATCTTAGGTCAAATTCTTGAAGTTAATTAGACTGTTAGGTATTGGTTTTACTTTGTTCTGAATTTCTTGATTAGAGTGGATATCCTAGTATGATTTGGTTGGTTCGACTTCGATTTTCGCTTCTTAATTTCTATTTCATCTTTTAGGTTCGCGAAGATTGTGAAAGAGGATCGAACTTCATCCGCAACTGTTACGCTGTCTTCTCATAATTCAGTCGATGAAGCTTCCGTTGGAACTGGTGAATTTTTCTTGTCTTTTTCATTTAAAATCAATGGAGATGAATTTTTGGCTCACTGGATAAACTTGGTGGGGTGGTTTTTGTTATCTCTAAATAACTATTTTGGTCTTACAAGTTTAAAATATTGGTGAGATTAGTTGGATCATGCAGAGAAACTCCAGACAATGCATATATATGTTGGTTTCTGATAGAAATCTGGTTTGCTGTTATATCTAATAGCAATGATGTATAATTTTCTTGTGAAGGTACTTTGGATCATACGAGAGATTGTCCAGACAATGCTGTACCCTGTGATGATGATGGTACATTTACATTGCCTTAAATTTATATTTATCCTAATTGGAATAAAATCAAAAGTTTCATTTGATGGAAATCATTCTATATCTCATTGTTATTAGTGCCTCCCTTGCCCCGATTTCCTCAATTATATGGGAAAAAACCATAAAGTAATACAAGTAAAGCTCTGTCTCCTGAAGTTTCATGTATACTAGGGTGGGTTAACTAGTAGCGTATTTTATCCTTAGAGGCTCTCGTTGCCTACCTGTGTTGACCCTATGAATAGAGTAGACTTTAGCTCAACATTTATATGTTGATATACATGATAACTATAAATGTCAAGTTTTTTAGGTTTCTGAATTCAACCTTCTTTGTTCTCGACTTGAACCTTGATTTGCTTTTTCTATGTATTAGATAACTTGTTCATTGTTTCAATAATGTAAGTTGCTATTGATATGTTAGTTTATAGGTTAAATTACAATTATAGTTTGAACTTTTAAGTGTGTGTCAAATAGGTTGTTGAACTTTAAAAGGTTTCTAATTGGTCACTGAACTTTCAGTTTTATATCCAATAGGTTGTTGGATTTATAAAAGTGTTTAATAAATTTATAGACTCTTACTTTTGTATCTAATTAGTTCTTAAACTTTTAATTTTGTGTCTAATAGTTAATCAGTTCCGAAGGAGACAAAATTGAAGTTTAATGTCCTATTAAACACAATATTCAAGATTTGTTAGTTTTAAAAAATGTTGAATATATTTGGAACCTATTAGACACAAAATTGAAATTTCAGGGACTTTTTTGATATTTTTAAATTTCAGGGACCTTTTGTATTAGAAAAATAATTTCGTTGATGGTATGAAATTACAAAAGGAAGGGGGCCAATAGGGGGATAAGATTCTCCAATTAGGTAGGAGGAAAGAAAAGCTAAAGTAATGAAAAAGAGGAGAGCATTTACTCCAAGTCACAACCAAGCTAACTATAGCCTCAAAAAATCTAGTGTAGGTAAGTTTTTTATCTTGAAAGATTCTTCTATTTTGCTCTTGCCAAACGGTCCATCAGAAAGCTCTCATAAAATGTTCCCACATTAGCTTCTTTTTCTTTTTGAAAAAATGACCGTCCAAAGCCTAAGCAAGGAGGATCTTTGGATCCCCCAGAAGGACCATATGCCAATGGAAGGAATTCTGTAGGTGATTCCAAAAATTTCTTGCAAGCATACGTGTCGTGAAGAGATGATTTTGGGATCCAAGCCATTCATGCTAATAATGCATCATTGTGGAGATAAATTCCAGTGAGGAAGTCTTCTATGAAGTTTGTCATTTGGTACCCAGAAAAAGAAAATTTTCCAAATCATGAAATTCTTCGCTTTCTCTACATTTTTAAATGTAATAGTTTCTTTCAACGAGAAAATTAGGAAATTATCTTTTCTGTTTAATTTGTAATATTTTAGACCTAAAGCTTATCGGATTTGACTAGGTTAGATGAGTCTTACCTTTTTTTAATGAGTTTTTCTTTTTGTTTTATCTTTATGTATCGTAAGTTGTAAAATAAGGAAGAAATATAAGAAATCTTCAATACTCAAGCCTAACTCACTCTCCTTTGGCTTCCAAATGTTGGTTACAATTATGAAGTTGTGTCATACATTTCAGTCAAACATTGTACCGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATAGCCACTTATGCTTCTCCGGCAAATAATTTTCTTGCTTTTTATGATGCTTGTGATAGAAAATAGGTGCAATATAATTATAACAATAATGATGTTATTTAACACAAGTGGTGGTTACAATTTACAGATTGGGAAGCTATTGCAGATCGCCCACCAAATGAATTACTCTCCTTGCAATGTGAACCTGATAAACCTGAAATTTTAATCAGAGAGACAACAGACCAAACCACAATCAGAGAGACAACAGACAAAACCACTAGACGGCGTGGGAGGGGAACATTTTCATATAAGAAACATGAATTATATAGTGATAGGCTATCTGATTCTTCAACTACCAATGATACAAAGGACGAAGATGCTTCTCATGAGTTGGAGGTGGGGCGTAAGGAGCTAAAAAGTGGTAAGTCTCTTCACATAATTTCCAAATGTGATAGATGGAAATCCTTTTCATTGTTTTCTAGATCACTGGTGAAATTCGAAGTTATGTAGTCATTGTATGAGAGCTCTGGTTAGGCCTTCAGTTTATGGAAGAATAGAGTAACAAGGTATTTACCTAAAAAGGATAAATACTTTCTCAGTCCCTGAATTTCATCAATATTTTCCTTTGGTCTTTTAAGTTTCAGAACCTTAGAATTTAAATCCTGAGTTCTTTGGAACAATTCAAATTGGCCATTAGATTTTTTTTTTCTTTTTAATATTGTTCAAGTTTGACGGTTGACATAATAATACTGCCATTATTTTGGGCTTCTAAGCAGTTATTTATTGATGTTTGTGCACATTAAGTCATAATTTTCACCCAAGAGCTAAACTTTTTATTTTTTTATTTTTTTATTTTTTTTTTATTTAATTTCATTGTGTGAATCCAGCACAATATGGTACTCAACATGTTCTGGTCCTAGCTGACTTTCCACCGAGTACCAAAACAATAGATCTTGAAAGGCTACTTGGAAATTTCAAGAATTCTGGAGTTGTCATTCGCTGGGTCAATGATACGGTCGCACTTGCAGTTTTTCCGACACCGTCAACTGGTAAGTCACGTAAAACTAGATTTTCATTTTTGGGAAATCTTGTAGGATTTTCGGCAGTTTTTCTCATTTGGTATTGGACTTCGTGTCTCATCTTGTCAAACCTTATGTTACGTAAAAATTTCTATTTCTATCTCGTTTCATGTCCTGTAATTGGCGACTCAAGAAGTGGCTGAGTCAGTAGTAGATATTTGATACTGTACTTCTTTTGTTATGTTGGTTACTAGTTACTACCATCCTGTTTTCTGTCTATTACTTTCTTATTTGGCCTATGGCAGTTCGGGATAACTTTTGAAAAAAAGTGCTTTTAAGTGGAAACACTCTGAACACTTTTGGAAGAGCCGAGAATCAAGTGCTGCTTCTAAAAACACTTGAAATGCTTTTAAAATTCTAAAATCACTTTTGATTAGCTGATCAAACACTATATGGAGACTTTTTGTAAGTTCTTTTCATCCCCTAAAAACACTTTTTACCCTTCCGAAAGTTATCCTAAGTTAATCCTTGATTGTAGTCCTAGTTGTTTCTTGGGTTCTTTTGTGGAGATTACTAAACTTCCTCCATGTGATGTCTCCCATCAAATGCCGAAATATTCATATTTATGTTGAATCATTATCTTGCATCGTACCATTATTTCTCAATCGTTGACATTATAATGTTGATGAAGTAGTTTCATGTATTAAAATTAAGTTCTTTTCATAACTACCTTAATTTTCTAATGCAGCACTTGAAGTTCTCAATCATGTTAGATGCCCTTTCACTATACGCCTACTTGATGAAAATGATACTCTATTGAGCTCAATTCCACCGAGAGGTATGAGCATCTTCTTGAGTTTGTTAGTATTGATAAGACCTTTCTCTTTGTCTCTTTAATGACATCATTTCGTTTTTTGATAATAGCGTTGTGTTTTGTCATCGAGTATTTTTGTGGCTTGTTAAGGCACAACGTAGGAAAAAAGAAGATTTCTTTGGATAGAAAACTATTTTCTCATTAAAACTGGGGATGTCAAGTTAACACTGTTAAAGAAAGAAGCCAAAAAGCTTATGAAATCCCAAAAATCCTTATCATCCATCCCTACGATTGCAAAAAGTTCTATGTAACACCGAAGCTCACTGTTAGCAGAAATTGTCCTGTTTGAGCTTTCCTTTCCAAGCTTCCTCTCAAGGTTTTTAAATTGTGTCTGCTTGGGAGAGTTTTCCACACCCTTATAAAGAATGCTTCGTTTTCCTCCCAATCGATGTGGGATCCCACAATCCACCCCCTTCGGGGCCTAGTGTCCATACCCCAACAAATGTGGGATCTCACCTTCTATTTCTTTCCAGAAATCTCCACTAGAAGTTATTTGATGAAGATTGAATGAGCTGCCTTTTCCCTTTTGGTTTATTTTGTTAATGGCAGATTTGGAGCCTCCAAAGCAGAGGCCAAAGACATCGGCCAGAACTGCCCAACGACTGATTGCTCAAGGAATGGGATTGAAGCTGCCGGCTTCCACCACTGCCTTCGGGTCCAAAGAACTAAGAAAACAGGAAGAAGACAGGAGGAATCGCATTGTGTCAAGACAAAAATTGAGAGATGAAGCTTGGGGAGAATGATGATCCAAGTTAGTATCTTCTTACTTTTTCTTGAACAAACGGATACTGTCTGTGTCCCCATAATAACCATATAAAGACAAATCAACCACGGCCACACTGTTAAATGATCAATCTCCTTGTTTTCCTTTATTTTTTGCTCCCTTTGCCTTACTCCATTACCCATCTATTGTGTGTGATTAAAGAAACATCAAACCTCATTCTTGTGGCTGCAACTGTTCTGTTTTTGGATTCATTGGTCTGTACAACTTTGTTACTTGACTTTGTACATTTGCCTGTCAGACCAGGTCCAATGAAAATGAGTGATATATTTACTAGTTATTCCTCACGAAATTTTTTCGTCATAATGTTAGTTTCATATCATTGAATTCATACCATGAATCTTCTCGTATTTAGTAATATGATACTTTGGTTATTATTCTATCACTTCTCAACTAAGCGTACTGTTTGTTTGATAAGCTCAACCACATATTCACTATGACTAACTATGGTTGTGTCATTACGAGACTTGTAGCTTCTTTGTTTCGAACTCTAGGGTATTTATTTCACCTTGGCTATGTCAAGGGTATGACTCTGATACCAATTGTTAAGAACGATCTTCAAAATATCTCCACAATGGTATGACATTGTCCACTTTGGACAATAAACTCTTGAGAAATGGTTTCATGCTATTGGAGATATTTGTGTCTTTACATATGTACTATGAATCAACGTAGATTTGGTCACATTCCTAAAAAAATGTTCTTTTTCTTACAATAAAGGGTAAATAGGTTATTATTCAGGTCCTTGATGAAGTTTCATATCATGGAAGCTTTAGTTTTCTTTCAGCATAGAGGGAAGCTCAAGGATGAAAGAATTCATTTATTCTTCAAGGAGTGAGACTCTAAGCTATTTGGTAACAATAATTATTGCAAGTTGTTTAAATTTTCAAATTAGATACTATAATGACATGTCAATAATTATTATTTCTAATTTCTAGTATAATAAGTGGGATATTGGCATTAAGGTCTTTATCGTCTTTTGACATTGTTTCTCTTTCGGATGTAAGTCATTAATGGATTGTAAATGTAATGTTTAGTAAAGGAGGATACATAAATAAACCGAACCCACATTCGAAAGAGTAATTTTGAGGACATAAGGTGTTACGAAATAGTTAAAAGAATTGATAGTTATATACCAATAAGGAGTCCTATTCAGTGGGTTACTCATAAGAACTTCATTTCTATGAAGACAGGTTGTAAGGTTTCACAATGGTTGGAGAGGAGAATGAAACATCTCTTATAAGAGTGGGAAATTTTTTTTTTCCTAACAGACATGTTTTAAAACTGTGAGGTTGACGGCAATACGTAACAAGATAAAGCGGACAATATCTGCTAGTGGTGGGCTTAGATTGTTACAAATGGTATTAGAGCTAGACATTAGGTGGTGTTCTAGCGAAGACGATGGGCCCCAAGGGGTGGATTGTGAGGTCTCACATTGGTTGGAGAGGGGAACGAAGCACTCCTTATAAGGGTGCGGAAATCTTTGCCTAACGGGTGCATTTTAAAACCACGAGACTAATGATGATACGTAACAGGCTAAAGTGGACAATATAACGATGATACGTAATTGGTTAAAGTGGACAATATTGATTACTCTTCATAGTGAGCATGTTAGATCAACTTTAACAATTTCTTTAAATACTTAGATCCGAAGACATAAATAGCTAGATCTAAGATTTAATTTATTGAGTTAATTTTTGAAGTAGGTCGTTTCAATCTGAACGAGCTTCCACTTATGTTTTACACTTTCCCTACGTGAGAGAATATATCTAAATGAAAAATTCTAAACATTATCGAAATACATTTTGTACATTTGTCTTTCCATGACATTCGTCCTACATCCGACAAATGTTAAAATGCTTGTTTCCTTTTAGGCTTTGGACTATAGTTATGTAGAAGAGGATTGAGATTGGGAGGAATGTTTTGCTTGCTACTTTTGACCATTCAAATCCTAATACTTTCATCTCTTTCTTTGTAGGTAAGTGTGAGATCCCACTTCGATAGGAGAGGGGAACAAGCATTCCTTATAAGGGTGTGGAAAGTTCTCTACAGTAAACGAGATTTAAAATCGTGAGGCTGATGGTGAGACATAACGAGCTAAAACAGACAAATATCTGCTAGCGGTGGACTTGAACTATTACAGTAAGCCTCTCTCATCAATGAATAACTTGAACTTTTCTTTCCTTGCGAAGAAAATGCTTATGAATCCTCGTTCCTTTTCCTCTCATATTGACCAAAATTCTTTTGGTTAAAAGACTTTTGAAAAAGATAGTGTGAATGCAATGAAGCCAAGGAAAATTTGGTTCATAGGTAATGAAGTGTCCTTTTTTTGGTATAAAAACAA

mRNA sequence

ATACGACTGAGATATTTATAAACTTTCTGCGCGACTTCCTCATCTTCCTCTGTTGCTTGATTATCAACCGGAGCGATGGACAAAGAAGAAGAACGGCAACAGCGGCGATCGAACTGGAGTGAGACAGTGGAGGATCTCGTCACTGCCGGTGACACTGATGCTGCAATTTCTCTTCTCGAATCGGTGATTTCTGACCTCCAAACTTCAGAAAACTCTAATCCAGATCCTCAATTGGCCGCCGCTCTCACCGACTTGTCTGCTCTTTACTCTTCTAAAGGTTTCTCTCTTAAAGCCGACGACATTGCGGCTAAAGCTTTGGTTCTTAAACAGCAAGACCAAGTCTCTTTCTATTTCATCTTTTAGGTTCGCGAAGATTGTGAAAGAGGATCGAACTTCATCCGCAACTGTTACGCTGTCTTCTCATAATTCAGTCGATGAAGCTTCCGTTGGAACTGGTACTTTGGATCATACGAGAGATTGTCCAGACAATGCTGTACCCTGTGATGATGATGATTGGGAAGCTATTGCAGATCGCCCACCAAATGAATTACTCTCCTTGCAATGTGAACCTGATAAACCTGAAATTTTAATCAGAGAGACAACAGACCAAACCACAATCAGAGAGACAACAGACAAAACCACTAGACGGCGTGGGAGGGGAACATTTTCATATAAGAAACATGAATTATATAGTGATAGGCTATCTGATTCTTCAACTACCAATGATACAAAGGACGAAGATGCTTCTCATGAGTTGGAGGTGGGGCGTAAGGAGCTAAAAAGTGCACAATATGGTACTCAACATGTTCTGGTCCTAGCTGACTTTCCACCGAGTACCAAAACAATAGATCTTGAAAGGCTACTTGGAAATTTCAAGAATTCTGGAGTTGTCATTCGCTGGGTCAATGATACGGTCGCACTTGCAGTTTTTCCGACACCGTCAACTGCACTTGAAGTTCTCAATCATGTTAGATGCCCTTTCACTATACGCCTACTTGATGAAAATGATACTCTATTGAGCTCAATTCCACCGAGAGATTTGGAGCCTCCAAAGCAGAGGCCAAAGACATCGGCCAGAACTGCCCAACGACTGATTGCTCAAGGAATGGGATTGAAGCTGCCGGCTTCCACCACTGCCTTCGGGTCCAAAGAACTAAGAAAACAGGAAGAAGACAGGAGGAATCGCATTGTGTCAAGACAAAAATTGAGAGATGAAGCTTGGGGAGAATGATGATCCAAGTTAGTATCTTCTTACTTTTTCTTGAACAAACGGATACTGTCTGTGTCCCCATAATAACCATATAAAGACAAATCAACCACGGCCACACTGTTAAATGATCAATCTCCTTGTTTTCCTTTATTTTTTGCTCCCTTTGCCTTACTCCATTACCCATCTATTGTGTGTGATTAAAGAAACATCAAACCTCATTCTTGTGGCTGCAACTGTTCTGTTTTTGGATTCATTGGTCTGTACAACTTTGTTACTTGACTTTGTACATTTGCCTGTCAGACCAGGTCCAATGAAAATGAGTGATATATTTACTAGTTATTCCTCACGAAATTTTTTCGTCATAATGTTAGTTTCATATCATTGAATTCATACCATGAATCTTCTCGTATTTAGTAATATGATACTTTGGTTATTATTCTATCACTTCTCAACTAAGCGTACTGTTTGTTTGATAAGCTCAACCACATATTCACTATGACTAACTATGGTTGTGTCATTACGAGACTTGTAGCTTCTTTGTTTCGAACTCTAGGGTATTTATTTCACCTTGGCTATGTCAAGGGTATGACTCTGATACCAATTGTTAAGAACGATCTTCAAAATATCTCCACAATGGTATGACATTGTCCACTTTGGACAATAAACTCTTGAGAAATGGTTTCATGCTATTGGAGATATTTGTGTCTTTACATATGTACTATGAATCAACGTAGATTTGGTCACATTCCTAAAAAAATGTTCTTTTTCTTACAATAAAGGGTAAATAGGTTATTATTCAGGTCCTTGATGAAGTTTCATATCATGGAAGCTTTAGTTTTCTTTCAGCATAGAGGGAAGCTCAAGGATGAAAGAATTCATTTATTCTTCAAGGAGTGAGACTCTAAGCTATTTGGTAAGTGTGAGATCCCACTTCGATAGGAGAGGGGAACAAGCATTCCTTATAAGGGTGTGGAAAGTTCTCTACAGTAAACGAGATTTAAAATCGTGAGGCTGATGGTGAGACATAACGAGCTAAAACAGACAAATATCTGCTAGCGGTGGACTTGAACTATTACAGTAAGCCTCTCTCATCAATGAATAACTTGAACTTTTCTTTCCTTGCGAAGAAAATGCTTATGAATCCTCGTTCCTTTTCCTCTCATATTGACCAAAATTCTTTTGGTTAAAAGACTTTTGAAAAAGATAGTGTGAATGCAATGAAGCCAAGGAAAATTTGGTTCATAGGTAATGAAGTGTCCTTTTTTTGGTATAAAAACAA

Coding sequence (CDS)

ATGGACAAAGAAGAAGAACGGCAACAGCGGCGATCGAACTGGAGTGAGACAGTGGAGGATCTCGTCACTGCCGGTGACACTGATGCTGCAATTTCTCTTCTCGAATCGGTGATTTCTGACCTCCAAACTTCAGAAAACTCTAATCCAGATCCTCAATTGGCCGCCGCTCTCACCGACTTGTCTGCTCTTTACTCTTCTAAAGGTTTCTCTCTTAAAGCCGACGACATTGCGGCTAAAGCTTTGGTTCTTAAACAGCAAGACCAAGTCTCTTTCTATTTCATCTTTTAG

Protein sequence

MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDLSALYSSKGFSLKADDIAAKALVLKQQDQVSFYFIF
Homology
[Close]
BLAST of Carg17832 vs. NCBI nr
Match: KAG7023801.1 (hypothetical protein SDJN02_14827 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVSFYFIF 96
          SALYSSKGFSLKADDIAAKALVLKQQDQVSFYFIF
Sbjct: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVSFYFIF 95

[Close]
BLAST of Carg17832 vs. NCBI nr
Match: XP_023516771.1 (coiled-coil domain-containing protein R3HCC1L [Cucurbita pepo subsp. pepo] >XP_023516773.1 coiled-coil domain-containing protein R3HCC1L [Cucurbita pepo subsp. pepo] >XP_023516774.1 coiled-coil domain-containing protein R3HCC1L [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDIAAKALVLKQQDQVS
Sbjct: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 90

[Close]
BLAST of Carg17832 vs. NCBI nr
Match: XP_022961195.1 (coiled-coil domain-containing protein R3HCC1L [Cucurbita moschata] >XP_022961196.1 coiled-coil domain-containing protein R3HCC1L [Cucurbita moschata] >XP_022961197.1 coiled-coil domain-containing protein R3HCC1L [Cucurbita moschata] >KAG6590134.1 Coiled-coil domain-containing protein R3HCC1L, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDIAAKALVLKQQDQVS
Sbjct: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 90

[Close]
BLAST of Carg17832 vs. NCBI nr
Match: XP_022988105.1 (coiled-coil domain-containing protein R3HCC1L isoform X2 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEER+QRRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERKQRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDI AKALVLKQ DQVS
Sbjct: 61 SALYSSKGFSLKADDIVAKALVLKQHDQVS 90

[Close]
BLAST of Carg17832 vs. NCBI nr
Match: XP_022988104.1 (coiled-coil domain-containing protein R3HCC1L isoform X1 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEER+QRRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERKQRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDI AKALVLKQ DQVS
Sbjct: 61 SALYSSKGFSLKADDIVAKALVLKQHDQVS 90

[Close]
BLAST of Carg17832 vs. ExPASy TrEMBL
Match: A0A6J1H9N8 (coiled-coil domain-containing protein R3HCC1L OS=Cucurbita moschata OX=3662 GN=LOC111461782 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.6e-38
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDIAAKALVLKQQDQVS
Sbjct: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 90

[Close]
BLAST of Carg17832 vs. ExPASy TrEMBL
Match: A0A6J1JIN7 (coiled-coil domain-containing protein R3HCC1L isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485451 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEER+QRRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERKQRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDI AKALVLKQ DQVS
Sbjct: 61 SALYSSKGFSLKADDIVAKALVLKQHDQVS 90

[Close]
BLAST of Carg17832 vs. ExPASy TrEMBL
Match: A0A6J1JLB3 (coiled-coil domain-containing protein R3HCC1L isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111485451 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEER+QRRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERKQRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDI AKALVLKQ DQVS
Sbjct: 61 SALYSSKGFSLKADDIVAKALVLKQHDQVS 90

[Close]
BLAST of Carg17832 vs. ExPASy TrEMBL
Match: A0A6J1JC58 (coiled-coil domain-containing protein R3HCC1L isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485451 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEER+QRRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERKQRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDI AKALVLKQ DQVS
Sbjct: 61 SALYSSKGFSLKADDIVAKALVLKQHDQVS 90

[Close]
BLAST of Carg17832 vs. ExPASy TrEMBL
Match: A0A6J1JKP2 (coiled-coil domain-containing protein R3HCC1L isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485451 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MDKEEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQTSENSNPDPQLAAALTDL 60
          MDKEEER+QRRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSENSNPDPQLAAALTDL
Sbjct: 1  MDKEEERKQRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENSNPDPQLAAALTDL 60

Query: 61 SALYSSKGFSLKADDIAAKALVLKQQDQVS 91
          SALYSSKGFSLKADDI AKALVLKQ DQVS
Sbjct: 61 SALYSSKGFSLKADDIVAKALVLKQHDQVS 90

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BLAST of Carg17832 vs. TAIR 10
Match: AT5G22120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 0 

Query: 4  EEERQQRRSNWSETVEDLVTAGDTDAAISLLESVISDLQ-------TSENSNPDPQLAAA 63
          EEE +    NWSE VEDLV AGD  AAIS LES+ ++LQ       + E +    QL+AA
Sbjct: 8  EEEGRISEPNWSERVEDLVVAGDVTAAISFLESLETNLQSRLGSSSSGERTEFGLQLSAA 67

Query: 64 LTDLSALYSSKGFSLKADDIAAKALVLKQQ 87
          LT L+ LYSS+G SLK+D++  ++ ++KQ+
Sbjct: 68 LTQLADLYSSEGLSLKSDELRTRSSLIKQR 97

The following BLAST results are available for this feature:
BLAST of Carg17832 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023801.11.5e-40100.00hypothetical protein SDJN02_14827 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023516771.11.6e-37100.00coiled-coil domain-containing protein R3HCC1L [Cucurbita pepo subsp. pepo] >XP_0... [more]
XP_022961195.11.6e-37100.00coiled-coil domain-containing protein R3HCC1L [Cucurbita moschata] >XP_022961196... [more]
XP_022988105.16.6e-3695.56coiled-coil domain-containing protein R3HCC1L isoform X2 [Cucurbita maxima][more]
XP_022988104.16.6e-3695.56coiled-coil domain-containing protein R3HCC1L isoform X1 [Cucurbita maxima][more]
BLAST of Carg17832 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17832 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H9N87.6e-38100.00coiled-coil domain-containing protein R3HCC1L OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1JIN73.2e-3695.56coiled-coil domain-containing protein R3HCC1L isoform X2 OS=Cucurbita maxima OX=... [more]
A0A6J1JLB33.2e-3695.56coiled-coil domain-containing protein R3HCC1L isoform X4 OS=Cucurbita maxima OX=... [more]
A0A6J1JC583.2e-3695.56coiled-coil domain-containing protein R3HCC1L isoform X3 OS=Cucurbita maxima OX=... [more]
A0A6J1JKP23.2e-3695.56coiled-coil domain-containing protein R3HCC1L isoform X1 OS=Cucurbita maxima OX=... [more]
BLAST of Carg17832 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G22120.11.9e-1247.78unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039884Coiled-coil domain-containing protein R3HC1/R3HCLPANTHERPTHR21678GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88coord: 1..88
NoneNo IPR availablePANTHERPTHR21678:SF0OS01G0965600 PROTEINcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17832-RACarg17832-RAmRNA