Carg17798 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17798
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBasic leucine zipper/W2 domain protein
LocationCarg_Chr10: 3990708 .. 3990914 (+)
RNA-Seq ExpressionCarg17798
SyntenyCarg17798
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGACAGAAGAGCCCCGGCGTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGAGGAGGATGAGGGATATGGAGAACATGATCAACTCCGATCAACAACCATCGCTGCACCACCAACAAACGTCTTCCACCGATTCGTTTTCCGTCGATGAAGGAGACGTATCACAGGCTTAG

mRNA sequence

ATGGCGAGACAGAAGAGCCCCGGCGTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGAGGAGGATGAGGGATATGGAGAACATGATCAACTCCGATCAACAACCATCGCTGCACCACCAACAAACGTCTTCCACCGATTCGTTTTCCGTCGATGAAGGAGACGTATCACAGGCTTAG

Coding sequence (CDS)

ATGGCGAGACAGAAGAGCCCCGGCGTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGAGGAGGATGAGGGATATGGAGAACATGATCAACTCCGATCAACAACCATCGCTGCACCACCAACAAACGTCTTCCACCGATTCGTTTTCCGTCGATGAAGGAGACGTATCACAGGCTTAG

Protein sequence

MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSVDEGDVSQA
Homology
BLAST of Carg17798 vs. NCBI nr
Match: XP_022987500.1 (uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetical protein SDJN02_14793, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 6.2e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60
          MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60

Query: 61 DEGDVSQA 69
          DEGDVSQA
Sbjct: 61 DEGDVSQA 68

BLAST of Carg17798 vs. NCBI nr
Match: XP_023516467.1 (uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60
          MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60

Query: 61 DEGDVSQA 69
          DEGD SQA
Sbjct: 61 DEGDASQA 68

BLAST of Carg17798 vs. NCBI nr
Match: XP_038878707.1 (uncharacterized protein LOC120070883 [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 4.6e-23
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSS------ 60
          MAR+KSPG+KILWVWTLGTAAIL+TSVAR RMRDMEN+INSDQQPSLHHQQTSS      
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILITSVARMRMRDMENIINSDQQPSLHHQQTSSTDSFPI 60

Query: 61 TDSFSVDEGDVSQ 68
          TDSFSVDEGD SQ
Sbjct: 61 TDSFSVDEGDASQ 73

BLAST of Carg17798 vs. NCBI nr
Match: XP_011660223.2 (uncharacterized protein LOC105436351 [Cucumis sativus] >KAE8653574.1 hypothetical protein Csa_007337 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 5.2e-19
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMI--NSDQQPSLHHQQTSSTDSF 60
          M R+KSPG+KILWVWTLGTAAIL TSV R R+RDMEN +  NSDQQ SLHHQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSSTDSF 60

Query: 61 SVDEGDVSQ 68
          S+D+ D SQ
Sbjct: 61 SLDDADKSQ 69

BLAST of Carg17798 vs. NCBI nr
Match: XP_008443690.1 (PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMI--NSDQQPSLHHQQTSST--- 60
          M R+KSPG+KILWVWTLGTAAIL TSV R R+RDMEN I  NSDQQPSLHHQQTSST   
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 ---DSFSVDEGDVSQ 68
             DSFSVD+ D SQ
Sbjct: 61 PIPDSFSVDDADKSQ 75

BLAST of Carg17798 vs. ExPASy TrEMBL
Match: A0A6J1JH17 (uncharacterized protein LOC111485045 OS=Cucurbita maxima OX=3661 GN=LOC111485045 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60
          MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60

Query: 61 DEGDVSQA 69
          DEGDVSQA
Sbjct: 61 DEGDVSQA 68

BLAST of Carg17798 vs. ExPASy TrEMBL
Match: A0A0A0LY21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMI--NSDQQPSLHHQQTSSTDSF 60
          M R+KSPG+KILWVWTLGTAAIL TSV R R+RDMEN +  NSDQQ SLHHQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSSTDSF 60

Query: 61 SVDEGDVSQ 68
          S+D+ D SQ
Sbjct: 61 SLDDADKSQ 69

BLAST of Carg17798 vs. ExPASy TrEMBL
Match: A0A5D3E426 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00800 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.7e-19
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMI--NSDQQPSLHHQQTSST--- 60
          M R+KSPG+KILWVWTLGTAAIL TSV R R+RDMEN I  NSDQQPSLHHQQTSST   
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 ---DSFSVDEGDVSQ 68
             DSFSVD+ D SQ
Sbjct: 61 PIPDSFSVDDADKSQ 75

BLAST of Carg17798 vs. ExPASy TrEMBL
Match: A0A1S3B9D1 (uncharacterized protein LOC103487223 OS=Cucumis melo OX=3656 GN=LOC103487223 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.7e-19
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMI--NSDQQPSLHHQQTSST--- 60
          M R+KSPG+KILWVWTLGTAAIL TSV R R+RDMEN I  NSDQQPSLHHQQTSST   
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 ---DSFSVDEGDVSQ 68
             DSFSVD+ D SQ
Sbjct: 61 PIPDSFSVDDADKSQ 75

BLAST of Carg17798 vs. ExPASy TrEMBL
Match: A0A6J1EZE2 (uncharacterized protein LOC111440489 OS=Cucurbita moschata OX=3662 GN=LOC111440489 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQ--QTSSTDSF 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME++I SDQQ    HQ  QTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 SVDEGDVSQ 68
           V EG+ S+
Sbjct: 61 FVGEGETSE 69

BLAST of Carg17798 vs. TAIR 10
Match: AT1G06010.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-13
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSSTDSFSV 60
          M R+KSPG+KILWVWT+GTAAILVTSV R RM+DM+ M+N +Q+ +    Q  S    SV
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDSSV 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022987500.16.2e-28100.00uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetic... [more]
XP_023516467.11.8e-2798.53uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo][more]
XP_038878707.14.6e-2383.56uncharacterized protein LOC120070883 [Benincasa hispida][more]
XP_011660223.25.2e-1976.81uncharacterized protein LOC105436351 [Cucumis sativus] >KAE8653574.1 hypothetica... [more]
XP_008443690.12.0e-1874.67PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JH173.0e-28100.00uncharacterized protein LOC111485045 OS=Cucurbita maxima OX=3661 GN=LOC111485045... [more]
A0A0A0LY212.5e-1976.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1[more]
A0A5D3E4269.7e-1974.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B9D19.7e-1974.67uncharacterized protein LOC103487223 OS=Cucumis melo OX=3656 GN=LOC103487223 PE=... [more]
A0A6J1EZE24.1e-1775.36uncharacterized protein LOC111440489 OS=Cucurbita moschata OX=3662 GN=LOC1114404... [more]
Match NameE-valueIdentityDescription
AT1G06010.12.1e-1358.33unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17798-RACarg17798-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane