Carg17789 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17789
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr10: 3932659 .. 3934968 (-)
RNA-Seq Expression	Carg17789
Synteny	Carg17789

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCAGATATTGTCCGTAAAACAAAGGTCTTAATAGTTACTTGGGTAAACAAAATACTGTAGTATATGGGGGAATGGTACTAAAGACGTGTTGGAAAATTCATTTGTTTACCTTGCACTATGTGAGATCCCACATTGATCGGAGAGAGGAAGGGAACCATTCTTAATAAGAGTGTGAAACCTCTGCTAACTAACTGTATAAATGTTTTTTGGATTTTTATTTTTAAAATTGAAGAGTATTTTGAGATTTTTTTGAACTTATTATCCAAAGTTTTGAAATTCGTTTACCCTAAAAAACGAAAAAAAATCTCTGCAATTCCAACCCAAGCAAAGATACTGTGCTAATCTTCTCCTTACTTCGATCTTCAACACTCAATCACTGCCTCTCTGAAGTCGTCGGAGTTCGCCTTCGTGGAGTTGCTGCTATCAGTTTCTGTCGTCTGAGCTTGTCGGAGCAAGCCGTCGAGTTCGCTGCTTACCGTCTGAGGTTGATTGATTGGCTCATTGTTGAAGGTTCTCGTCAGGGGATTCTGTGGTTGAAGCGCTATTTACCAATTCGTGTGAGTTCAGAAACTAGGTTTGCTTAATGAATGAGTTTTGAATGATTTTCTATCTGTATCTCTCTTCACCTTCCCGACAATGGGTTATGGGTGAATCGAATATGGAACAGGGTTCAGTATTGATATAATGGGTTGGGTTAATCGAATCTAAAAATATGGACCAAGTATAGATAATGTCTGAACCTAAAACTTCATGTATATGTTTTTGTGCATTTTGATTCTTTAGAAATATCCATTGACATGGACGTTCTGGGGAAATTTCTATTGCTATTTCCCTTGAGTTGTTTTTGATGGTTTTATTGATATGGGTATTTAAAACCTTGTTTTTGGAACTTGGTATGATACCTTTGAATGAAATGCTAATCTGATGCTATGCTTATGAGATATACATTGGTTGGAGAGGAGAACGAAACATTTTTTATAAGGGGTTGGAAACCTCTTCCTAGTATACACGTTTTAAAAACCTTGAGAGGGCTCCAAAGGGGATAATATATGCTAGTGGTGTGATTGGACTGTTACAAATGGTATTAGAGCCAAACATCGGACGATGTGCCAGAAAGGACACTAAGCCCTGAAGGAGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGTTGAAGGAAGCATTCTTTATAAGGGTATGAAAACCTCTCCCTAATATACGCGTTTTAAAAACCTTGAGGGGAAGCCTAAAAGGAAAAGTCCAAAGAGGACAATATTTGCTAGCGGTGTGCTTGGGCTATTACAAATGGTATCAGAGCCAGACACTAGGTGATGTGCTAGTGAGGATGCTGGGCCCTGAAGCGGGGTGGATTGTGAGATCCCATATCGGTTGGGGAGGAGAATGATGCATTCTTTATAAGGGGGTGGAAACCTCTTCCTAGTATACACGTTTTAAAAACCTTGAGAGGGCTCCAAAGAGGATAATATATGCTAGTGGTGTGATTGGACTGTTACAAATGGTATTAGAGCCAAACATCGGACGATGTGCCAGAAAGGACACTACGCCCTGAAGGAGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGTTGAAGGAAGCATTCTTTATAAGGGTATGAAAACCTCTCCTTAATATACGCGTTTTAAAAACCTTGAGGGGAAGCCTAAAAGGAAAAGTTCAAAGAGGACAATATTTGCTAGCGGTGTGCTTGGGCTATTACAAATGGTATCAGAGCCAGACACTAGGTGATGTGCTAGGATGCTGGCGGGGTCTATCGGTTGGGGAGGAGCATTCTTTATAAGGGTGTGGAAATCTATAGCAGACGCGTTTAAAAACTTGAAGGGAAACGCTGCGTGTGCTTGGGCTGTTACAATGCTACTGAATTGGCTCTACTTTCAAGCTTTTATATTATCTCGTGCGTGCGATTAGAGGATCCTTAATGCAAAGGAGGCTATAAATACATATAACTTGGCTGTTTCTTTGGCTGTTTCTTGTAAACAAGATTAAGTTTTCATCATTAGTTTTGCAATTTCTTCTTTCATTTATTTATGGTTTACTATAGTTTTTCATCACCTGCATTGCAATGTTCTGAGTTTTGTTTCCAATTTTTTGTACAAGTCAACTGAAAGTGGTACAAATTCATTTGTATTTGTAGTGTTCTATGTAAGATATTGGTAGACTATGCTTACCATATTTCTATTTCATTAATTTTTCAGATGAACGTGGGTTGTTCATCTGTTCTTGCTGATTCTAGTGCAATGAAAATCTTCTGGATTACTGTATAG

mRNA sequence

ATGTTTTCAGATATTGTCCTCGTCGGAGTTCGCCTTCGTGGAGTTGCTGCTATCAGTTTCTGTCGTCTGAGCTTGTCGGAGCAAGCCGTCGAGTTCGCTGCTTACCGTCTGAGGTTGATTGATTGGCTCATTGTTGAAGGTTCTCGTCAGGGGATTCTGTGGTTGAAGCGCTATTTACCAATTCGTATGAACGTGGGTTGTTCATCTGTTCTTGCTGATTCTAGTGCAATGAAAATCTTCTGGATTACTGTATAG

Coding sequence (CDS)

ATGTTTTCAGATATTGTCCTCGTCGGAGTTCGCCTTCGTGGAGTTGCTGCTATCAGTTTCTGTCGTCTGAGCTTGTCGGAGCAAGCCGTCGAGTTCGCTGCTTACCGTCTGAGGTTGATTGATTGGCTCATTGTTGAAGGTTCTCGTCAGGGGATTCTGTGGTTGAAGCGCTATTTACCAATTCGTATGAACGTGGGTTGTTCATCTGTTCTTGCTGATTCTAGTGCAATGAAAATCTTCTGGATTACTGTATAG

Protein sequence

MFSDIVLVGVRLRGVAAISFCRLSLSEQAVEFAAYRLRLIDWLIVEGSRQGILWLKRYLPIRMNVGCSSVLADSSAMKIFWITV

Homology

[Close]

BLAST of Carg17789 vs. NCBI nr
Match: KAG7023758.1 (hypothetical protein SDJN02_14784, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MFSDIVLVGVRLRGVAAISFCRLSLSEQAVEFAAYRLRLIDWLIVEGSRQGILWLKRYLP 60
          MFSDIVLVGVRLRGVAAISFCRLSLSEQAVEFAAYRLRLIDWLIVEGSRQGILWLKRYLP
Sbjct: 1  MFSDIVLVGVRLRGVAAISFCRLSLSEQAVEFAAYRLRLIDWLIVEGSRQGILWLKRYLP 60

Query: 61 IRMNVGCSSVLADSSAMKIFWITV 85
          IRMNVGCSSVLADSSAMKIFWITV
Sbjct: 61 IRMNVGCSSVLADSSAMKIFWITV 84

[Close]

BLAST of Carg17789 vs. NCBI nr
Match: KAG6590089.1 (Proteinaceous RNase P 1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 7  LVGVRLRGVAAISFCRLSLSEQAVEFAAYRLRLIDWLIVEGSRQGILWLKRYLPIRMNVG 66
          +VGVRLRGVAAIS CRLSLSEQAVEFAAYRLRLIDWLIVEGSRQG+LWLKRYLPIRMNVG
Sbjct: 10 VVGVRLRGVAAISSCRLSLSEQAVEFAAYRLRLIDWLIVEGSRQGVLWLKRYLPIRMNVG 69

Query: 67 CSSVLADSSAMKIFWIT 84
          CSSVLADSSAMKIFWIT
Sbjct: 70 CSSVLADSSAMKIFWIT 86

The following BLAST results are available for this feature:

BLAST of Carg17789 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023758.1	1.1e-37	100.00	hypothetical protein SDJN02_14784, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6590089.1	1.3e-32	96.10	Proteinaceous RNase P 1, chloroplastic/mitochondrial, partial [Cucurbita argyros...	[more]

BLAST of Carg17789 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17789 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17789 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17789-RA	Carg17789-RA	mRNA