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Carg17569 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGATCCGCTTGTTTTGAATGTTTTTGTGTTGCTTGCTGTTCGAAATTTCCAGTTAGCATGTTGAGAACGTAGTCTGTGCGGTGTGTTAGATGAATTTTTTGCTGGTTTCTTGGGCTGTTCTGGAGTTTTTTTTTGGTTTTTGGAATTCAGTGTGATTTTGTGTTTTGGTTTTGATTGGTGATTGGATCTGTTGATCTTTTTGGTTGTTTGTGATTTGGAAATGATGAGATTTGAAATCGGATTCGTGGTTAGAGCGGACTCTGTTCGTTGATTAACGATTTACAGTTCGGGACGAGTTTGTTTTGAACGATCTGTTTTGGAATTAGCTCGCGGTGAGTTCATGAATCCTCACCGAAAGGGGTTAGTTTGACTTTCCTTGCGTTGACCGACTGATACAAGCCGAAACCCTTTTTCTCTTCTTTTAAATTGCGGCATGGGGACATTATACTATATCTTTAGCTAAGAACAGGGTGGAATGGATGCACATGGTTCTAAGCTTCTTTGATCTGTAACTATATGATGAGATTTTGTGTTCTTTCTTTCTCTTTCTTTCCTTCAGTTGCTTCTTATCAAATTCCGATCGTTTGTTAACGATTATAAGAGATTACTTTTCTGGTGCAGAATAATTGTTGCCTAAGCTTTGATGCAGAGAGCTATTACTTTTGAATTTGGTGTATTGTGAAACGAAGAGACATGAGTACGAAACTCCTGCATATCCAGCCCGAGGAACTACATTCGTATGTAAAGTGCCTCACATAATACTAGTTAATTTGCTTGTTCTTGAAAAAAAGAATTGAAGTGATTGATTACTGCTGCTTCAGTTGAAATTGAGGAAACAAAGTACTGCACGGTTCAGCTAGCCAATAACACCAACCATCATGTTGCCTTTAAAGTATGAACAGCCTTCGTTTTGTTTTGTTTATCTTGTACTTCTCGGAAAATTTGTGAATTTTCATGTGATATATGTAATAATATTATAACGTTTGGCAGATTAAAACCACGTCTCCTAAGAAATACTGTGTTCGACCCAATGTTGGGATAGTTTTTCCAAAATCAGCATGTGAATTTTCAGGT ATGGAAGATCCGCTTGTTTTGAATGTTTTTGTGTTGCTTGCTGTTCGAAATTTCCATTCGGGACGAGTTTGTTTTGAACGATCTGTTTTGGAATTAGCTCGCGTTGAAATTGAGGAAACAAAGTACTGCACGGTTCAGCTAGCCAATAACACCAACCATCATGTTGCCTTTAAAATTAAAACCACGTCTCCTAAGAAATACTGTGTTCGACCCAATGTTGGGATAGTTTTTCCAAAATCAGCATGTGAATTTTCAGGT ATGGAAGATCCGCTTGTTTTGAATGTTTTTGTGTTGCTTGCTGTTCGAAATTTCCATTCGGGACGAGTTTGTTTTGAACGATCTGTTTTGGAATTAGCTCGCGTTGAAATTGAGGAAACAAAGTACTGCACGGTTCAGCTAGCCAATAACACCAACCATCATGTTGCCTTTAAAATTAAAACCACGTCTCCTAAGAAATACTGTGTTCGACCCAATGTTGGGATAGTTTTTCCAAAATCAGCATGTGAATTTTCAGGT MEDPLVLNVFVLLAVRNFHSGRVCFERSVLELARVEIEETKYCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFSG Homology
BLAST of Carg17569 vs. NCBI nr
Match: KAG7021131.1 (Vesicle-associated protein 2-2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg17569 vs. NCBI nr
Match: XP_022937988.1 (vesicle-associated protein 2-2-like [Cucurbita moschata] >XP_022937989.1 vesicle-associated protein 2-2-like [Cucurbita moschata]) HSP 1 Score: 97.1 bits (240), Expect = 8.1e-17 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of Carg17569 vs. NCBI nr
Match: XP_023538184.1 (vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo] >XP_023538186.1 vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 97.1 bits (240), Expect = 8.1e-17 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of Carg17569 vs. NCBI nr
Match: KAG6586284.1 (putative manganese-transporting ATPase PDR2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 97.1 bits (240), Expect = 8.1e-17 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of Carg17569 vs. NCBI nr
Match: KAG7021168.1 (Vesicle-associated protein 2-2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 97.1 bits (240), Expect = 8.1e-17 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy Swiss-Prot
Match: B9DHD7 (Vesicle-associated protein 2-2 OS=Arabidopsis thaliana OX=3702 GN=PVA22 PE=1 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 7.9e-15 Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy Swiss-Prot
Match: Q8VZ95 (Vesicle-associated protein 1-1 OS=Arabidopsis thaliana OX=3702 GN=PVA11 PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 6.9e-11 Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy Swiss-Prot
Match: Q9SHC8 (Vesicle-associated protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=PVA12 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 7.6e-10 Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy Swiss-Prot
Match: Q9LVU1 (Vesicle-associated protein 2-1 OS=Arabidopsis thaliana OX=3702 GN=PVA21 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 7.6e-10 Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy Swiss-Prot
Match: Q9SYC9 (Vesicle-associated protein 1-4 OS=Arabidopsis thaliana OX=3702 GN=PVA14 PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 2.2e-09 Identity = 24/49 (48.98%), Postives = 38/49 (77.55%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy TrEMBL
Match: A0A6J1FHK4 (vesicle-associated protein 2-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444210 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.9e-17 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy TrEMBL
Match: A0A6J1HL55 (vesicle-associated protein 2-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465546 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 5.1e-17 Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy TrEMBL
Match: A0A6J1CPY8 (vesicle-associated protein 2-2-like OS=Momordica charantia OX=3673 GN=LOC111013073 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15 Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy TrEMBL
Match: A0A5D3D4C3 (Vesicle-associated protein 2-2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001030 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 8.2e-15 Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 0
BLAST of Carg17569 vs. ExPASy TrEMBL
Match: A0A0A0LIH5 (MSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G013300 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 8.2e-15 Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 0
BLAST of Carg17569 vs. TAIR 10
Match: AT1G08820.1 (vamp/synaptobrevin-associated protein 27-2 ) HSP 1 Score: 80.9 bits (198), Expect = 5.6e-16 Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of Carg17569 vs. TAIR 10
Match: AT1G08820.2 (vamp/synaptobrevin-associated protein 27-2 ) HSP 1 Score: 80.9 bits (198), Expect = 5.6e-16 Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0
BLAST of Carg17569 vs. TAIR 10
Match: AT3G60600.1 (vesicle associated protein ) HSP 1 Score: 67.8 bits (164), Expect = 4.9e-12 Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Carg17569 vs. TAIR 10
Match: AT3G60600.2 (vesicle associated protein ) HSP 1 Score: 67.8 bits (164), Expect = 4.9e-12 Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Carg17569 vs. TAIR 10
Match: AT3G60600.3 (vesicle associated protein ) HSP 1 Score: 67.8 bits (164), Expect = 4.9e-12 Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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