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Carg17563 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTGTGAGTTCTCTGCCTTTGAATTCTTGAGAGCGAAACTAAATTTGTGTTGTTCGGAGAATCTATGGGTTGAATGTTTAATGCAGATATATAGTTATAGAATAATTTGAACTTTTGTTTATCATGGGAAGAAAATGGTAATGATCTGGTGTATGTTTATGAGAATTTGATAATCTTTCTGAGACCCATTTTTAGAAAGTGGGCATCATATTGTGATGGGTTGTTTAAAATGATGGCCACAATATTGAGAAATACCTTCTCTGGTCTAAAGTCTTGGCTACTCACATATTGTCCTTTTGGATTTTTTCTTTCGGATTTTTCTAAGGAGAGGTTCCCATATCTTTATAAAGAATGAATTGTATACTCCTCAACTAATGTGAGGTCTCACAATCCACCCCCTTTGGAGCCCAGCGTCATCGTTCCCCTCTCCAATTGATGTGGGACCCCCTAATCGACCCCCCTTCGGGACCCAGCGTCCTCGTTCCCCTCTCCAATTGATGTGGGACTCCCTAATCGACCCCCCTTCGGGGCCCAGCGTCCTCGTTCCCCTCTCCAATTGATGTAAGATCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCCTCGTTCCCCTCTCCAATTGATGTGGGACCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCAGTGCTGGCACATCGCCTAGTGTCCACCCTCCTTTGGGGTTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCATTGCTAGCAGATATTGTCCTCTTTGGACAGCCTCTTTTCGAGCGCTTCCCTCAAGGTTTTTAAAACGGATCTCCTAAGGGAAGGTTTCTACACCTTCATAAAGAATACTTTGTTCTTCTCCCTAACTGATGTGAGATCTCACAATCCACCCCCTTCGGGTCCACCATCCTTGCTAGCACTCGTTCACCTCTCCAATCGACGTGGGATCCCCAATCCACCCCCCTTTGGGGCCCAGCGTCCTCGTAGGCACACCACCTGATGTCCACCCCCCTTTCAGGGTTCAGCCTCCTCGCTGGCACATTGCCTGGTGTCTAGCTCTAATACCATTTGTAACAGTCCAAGTCCACCGCTAGCAGATATTGTCCTTTTTTGGTTTTCCCATTCGGGCTTCCCTTCAAGGTTTTTAAAACTAGTCTTCTAGGTAAAGGTTTCCACACCCTTATAAAAAATGACTTGTTCTACTCCCCAACCAATGTGGGATCTCACAATGGTCTTCCTCAAAGAGTAGTAAGGTGGGCCATGAGCACAAGAAACATAGGTTAAATTATAAGTTTACGCTTTGATCACTTAAGTTTGTGTCTAAAGGGTCTCGAAACGTTATGAACTGCTGATTGTAGAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGGTAAACTAAGCTAACTACCACTTATTTCACTCTTCACTTTCCAAGCTACAATTTCTACCATTTCTTGCTTAAATTGAACACATTACAACTAGTAGATGCCTTAACTATACTCGTAGTCGTGTCTCCGTGTTTATGCGAGTTGACCTTGCATATGAGTTTCTCGACTTCAAAGGAAAAGAAAACCACAAACAAACTTGTATGTATCTTAGCACGTGTCAATATCCCAACTAGCGTTGTTGTTTCTACTAGGTCTGTGAGCTCTAAAAACGTCGAATATGTTGAGGACTCGTTAAACACAAATGAAAAGTTTCTGGATTTATTAGACATTGTTTGAAGCCTAGAAACCAAATAGACACGAATTTCATAGTTCAGGGACTTGTTAGGCACAAACTTGAGGAACTTCATCTTAATATTGTTCTCGGTTGCTTTTGCTCTAAGCTCTGATACTAAATGTAACCGTCCAAACCCACCGCTAGCAGATATTGCCCTTTTTGGGCTTTCTTTTCCGGGCTTCCCCGCAAGGTTTTAAAACATGTTTGCTAGGAAGAGGTTTCCACACCTTTCCCCTCTCCAATCGATGTGGGATCTCACAATCCACCCCGTTGGTGGTTCAACGTCCTCGCTAGCATATTGCCCGGTGTCTAGCTTTGATACCATTTGTAACAGTCCAAGTTCACCGCTAGCAGTTATTGTCCTCTTTGGGCTTTCACTTCCGGGTCTCTCCTTGAGGTTTTAAAACGTGTTTGCTGGGTCTTGAAGGGGGAGTACGAAACATTCTTTATAGGGGTGTAGAAACCTTTCTCTAGCAGACACGTTTTAAAACTGTGAGACTAACGGTGATACATAACGGGCCAAAGCGGACAATATCTAGTGTGGGCTTGAGACGTTACACTAAAACACTAAAACACCAGGATGAATGCATCAAAGAAGTGAATAATATGCTTGTAGTTGCTACTTCATTTATGAAACTGCAGGGTGAGTAAGGTTTGTTATGTAACTGCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAAGAAACATGTAAGACCCAGATCTTCCCATCTATTTCCTTCACATTCAAGTGTATAAATTTGATGCTGTATGATCGCTACAAGATGATTTGCAAGAAACCTGTTATGAAACATAGTTGAGTTTTTTTGTT ATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAAGAAACATGTAAGACCCAGATCTTCCCATCTATTTCCTTCACATTCAAGTGTATAAATTTGATGCTGTATGATCGCTACAAGATGATTTGCAAGAAACCTGTTATGAAACATAGTTGAGTTTTTTTGTT ATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGA METILFPHSLSPLFNPNPNPSTSKNLFPVSSQSRSKFQCFCKPISVSPKSLKSSLPVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK Homology
BLAST of Carg17563 vs. NCBI nr
Match: XP_022937634.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata] >KAG7021125.1 UPF0603 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 568.5 bits (1464), Expect = 3.2e-158 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of Carg17563 vs. NCBI nr
Match: KAG6586280.1 (UPF0603 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 565.5 bits (1456), Expect = 2.7e-157 Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 0
BLAST of Carg17563 vs. NCBI nr
Match: XP_023521578.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537526.1 UPF0603 protein At1g54780, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537527.1 UPF0603 protein At1g54780, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 561.6 bits (1446), Expect = 3.9e-156 Identity = 288/292 (98.63%), Postives = 290/292 (99.32%), Query Frame = 0
BLAST of Carg17563 vs. NCBI nr
Match: XP_022965867.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 557.0 bits (1434), Expect = 9.7e-155 Identity = 286/292 (97.95%), Postives = 288/292 (98.63%), Query Frame = 0
BLAST of Carg17563 vs. NCBI nr
Match: XP_022946287.1 (UPF0603 protein At1g54780, chloroplastic-like [Cucurbita moschata] >KAG6599269.1 UPF0603 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 496.9 bits (1278), Expect = 1.2e-136 Identity = 265/297 (89.23%), Postives = 270/297 (90.91%), Query Frame = 0
BLAST of Carg17563 vs. ExPASy Swiss-Prot
Match: Q9ZVL6 (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g54780 PE=1 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 3.0e-106 Identity = 206/292 (70.55%), Postives = 242/292 (82.88%), Query Frame = 0
BLAST of Carg17563 vs. ExPASy Swiss-Prot
Match: A2Y4G9 (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19898 PE=3 SV=2) HSP 1 Score: 375.6 bits (963), Expect = 5.3e-103 Identity = 206/302 (68.21%), Postives = 244/302 (80.79%), Query Frame = 0
BLAST of Carg17563 vs. ExPASy Swiss-Prot
Match: Q6ATY4 (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0401100 PE=3 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 5.3e-103 Identity = 206/302 (68.21%), Postives = 244/302 (80.79%), Query Frame = 0
BLAST of Carg17563 vs. ExPASy TrEMBL
Match: A0A6J1FBR7 (UPF0603 protein At1g54780, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443983 PE=4 SV=1) HSP 1 Score: 568.5 bits (1464), Expect = 1.6e-158 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of Carg17563 vs. ExPASy TrEMBL
Match: A0A6J1HLG7 (UPF0603 protein At1g54780, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465622 PE=4 SV=1) HSP 1 Score: 557.0 bits (1434), Expect = 4.7e-155 Identity = 286/292 (97.95%), Postives = 288/292 (98.63%), Query Frame = 0
BLAST of Carg17563 vs. ExPASy TrEMBL
Match: A0A6J1G3B4 (UPF0603 protein At1g54780, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111450415 PE=4 SV=1) HSP 1 Score: 496.9 bits (1278), Expect = 5.8e-137 Identity = 265/297 (89.23%), Postives = 270/297 (90.91%), Query Frame = 0
BLAST of Carg17563 vs. ExPASy TrEMBL
Match: A0A6J1KEE9 (UPF0603 protein At1g54780, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111493599 PE=4 SV=1) HSP 1 Score: 493.8 bits (1270), Expect = 4.9e-136 Identity = 265/301 (88.04%), Postives = 270/301 (89.70%), Query Frame = 0
BLAST of Carg17563 vs. ExPASy TrEMBL
Match: A0A5D3D492 (UPF0603 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00650 PE=4 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 1.1e-135 Identity = 261/298 (87.58%), Postives = 272/298 (91.28%), Query Frame = 0
BLAST of Carg17563 vs. TAIR 10
Match: AT1G54780.1 (thylakoid lumen 18.3 kDa protein ) HSP 1 Score: 386.3 bits (991), Expect = 2.1e-107 Identity = 206/292 (70.55%), Postives = 242/292 (82.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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