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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AAAAGAAAGTAATTATTGTGGCAGGATGCTTGAAATTTCCAGGACCCGACCGACATGTCGTTTGAGATGGAAAGGAAAACGGTCCTCAACCAGAGAGAAGAAGCAACCCCAACAGCACGGATGACAGCAAGTAAAAATGTCGAAGACCCAAATCAGACAAATTGACGGCAGAAGAAAAGCTTCCGGTAGGCGAATCGGTGGCAAAAGCGAACACTACCCATTGTTCAAAACACCCAATTCCGACCGACGTGAATTCAGGTTTGCTCCAGTACTTAGCCAATTGGGAATTTGTACATTCATGGAGAACAAGATTCAATGCCAAAGTGGGGATATGGAGAGGCAAAATCAGGCCATTTTTTGTGTGATTGAGCTCGATTTTGCATTTGGACAGGTAGTCGGGTAGACTAGGGAGTTGGGAGAAGTTGCTTGGTGCAATGGTGGAGCCGCTGAGGAAGATGCTGAGGGGCGACTGGTCGTCGAAGTCCCAAGCGATTTGCTTGACTAGGCAGCCTGCTTTGGAGTTCTTGTTCATGGGGGTAAGTTTTATGGACTTTCTATAGCTGTTCATGGCTTGGAAAAGCACGTCTTCTTTCACTGCAAATGATGGATGATTTAGGTGTGAGTTTCTATGAGATAGATAGCATATAGCAAATGATGTCTATGGCTAATGGGGAATTACAAGTAAAACAGTTCAACAGGAAAGAACCCATCAAAGACAAGGAGCTATGTGTTAGGAATCACGACTCTCCACGATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTTGCTTTGCTTTTAGGCTTCCCAAAAGGCTTCATATCAATGGAGAACTTTACTTGTAAACCCATGATCATTCCCTAAATTAACCAACAATCCTCTACTCGAACAAAGTACACTATAGAGCCTCCCCTAAGGCCTATGGAGCCCTCGAACAGTCTCCCCTTAATCGAGGCTCACAATTCTTTGTTCGATATTTGAGGATTCTATTAACATAGCTAAGTTTTAGGGCATGACTCTGATACCATGTTAGGAATCACGACTCTCCACATTGATACGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCATTCCCTAAATTAGTCCCTAAATTAGTCAACGTGGGACTCACTCCCAATAATCCTCAACAATAACAAATGATGTCTATGGATAATGGGGGATTATCAGTAAAACAGCTCAACAGGAAAGAACCCATCAAAGACAAGGAACTATGAAGCTCATATATGTTTGTGTGTGTCTTTAGAGAGAGAGAGAGAGAGAGAGAGAGCCACTAGGTCCATCGCCATGTACTGAGCACGACAATAGCAGCAAGCCACGGGCAACACTGTAGAGGAAGAAGCCAAGTTTGTGGGAGAGCAAGGCCATTATGCAGCTGCAGGAGGGTCAAGGAGAAGGCATCAGGCTTGCTTGGACAAAGAATACGAG mRNA sequence AAAAGAAAGTAATTATTGTGGCAGGATGCTTGAAATTTCCAGGACCCGACCGACATGTCGTTTGAGATGGAAAGGAAAACGGTCCTCAACCAGAGAGAAGAAGCAACCCCAACAGCACGGATGACAGCAAGTAAAAATGTCGAAGACCCAAATCAGACAAATTGACGGCAGAAGAAAAGCTTCCGGTAGGCGAATCGGTGGCAAAAGCGAACACTACCCATTGTTCAAAACACCCAATTCCGACCGACGTGAATTCAGACTAGGGAGTTGGGAGAAGTTGCTTGGTGCAATGGTGGAGCCGCTGAGGAAGATGCTGAGGGGCGACTGGTCGTCGAAGTCCCAAGCGATTTGCTTGACTAGGCAGCCTGCTTTGGAGTTCTTGTTCATGGGGCAAGCCACGGGCAACACTGTAGAGGAAGAAGCCAAGTTTGTGGGAGAGCAAGGCCATTATGCAGCTGCAGGAGGGTCAAGGAGAAGGCATCAGGCTTGCTTGGACAAAGAATACGAG Coding sequence (CDS) ATGTCGAAGACCCAAATCAGACAAATTGACGGCAGAAGAAAAGCTTCCGGTAGGCGAATCGGTGGCAAAAGCGAACACTACCCATTGTTCAAAACACCCAATTCCGACCGACGTGAATTCAGACTAGGGAGTTGGGAGAAGTTGCTTGGTGCAATGGTGGAGCCGCTGAGGAAGATGCTGAGGGGCGACTGGTCGTCGAAGTCCCAAGCGATTTGCTTGACTAGGCAGCCTGCTTTGGAGTTCTTGTTCATGGGGCAAGCCACGGGCAACACTGTAGAGGAAGAAGCCAAGTTTGTGGGAGAGCAAGGCCATTATGCAGCTGCAGGAGGGTCAAGGAGAAGGCATCAGGCTTGCTTGGACAAAGAATACGAG Protein sequence MSKTQIRQIDGRRKASGRRIGGKSEHYPLFKTPNSDRREFRLGSWEKLLGAMVEPLRKMLRGDWSSKSQAICLTRQPALEFLFMGQATGNTVEEEAKFVGEQGHYAAAGGSRRRHQACLDKEYE
Homology
BLAST of Carg17551 vs. NCBI nr
Match: KAG7021113.1 (hypothetical protein SDJN02_17801, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 254.2 bits (648), Expect = 5.7e-64 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 Query: 1 MSKTQIRQIDGRRKASGRRIGGKSEHYPLFKTPNSDRREFRLGSWEKLLGAMVEPLRKML 60 MSKTQIRQIDGRRKASGRRIGGKSEHYPLFKTPNSDRREFRLGSWEKLLGAMVEPLRKML Sbjct: 1 MSKTQIRQIDGRRKASGRRIGGKSEHYPLFKTPNSDRREFRLGSWEKLLGAMVEPLRKML 60
Query: 61 RGDWSSKSQAICLTRQPALEFLFMGQATGNTVEEEAKFVGEQGHYAAAGGSRRRHQACLD 120 RGDWSSKSQAICLTRQPALEFLFMGQATGNTVEEEAKFVGEQGHYAAAGGSRRRHQACLD Sbjct: 61 RGDWSSKSQAICLTRQPALEFLFMGQATGNTVEEEAKFVGEQGHYAAAGGSRRRHQACLD 120
Query: 121 KEYE 125 KEYE Sbjct: 121 KEYE 124
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7021113.1 | 5.7e-64 | 100.00 | hypothetical protein SDJN02_17801, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..32 |
Relationships
The following mRNA feature(s) are a part of this gene:
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